Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36936 * 119.99428 * 2 1 4 4 H 1.08005 * 119.99263 * 139.65690 * 3 2 1 5 5 C 1.38804 * 120.00632 * 319.64673 * 3 2 1 6 6 N 1.31616 * 120.00011 * 159.48866 * 5 3 2 7 7 Si 1.86799 * 120.00108 * 339.48971 * 5 3 2 8 8 H 1.48500 * 109.46892 * 95.50135 * 7 5 3 9 9 H 1.48494 * 109.47543 * 215.49984 * 7 5 3 10 10 H 1.48501 * 109.47342 * 335.50432 * 7 5 3 11 11 C 1.46489 * 119.99797 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.91433 * 177.55150 * 11 2 1 13 13 C 1.55159 * 111.00972 * 53.64788 * 11 2 1 14 14 C 1.54320 * 102.94408 * 206.42259 * 13 11 2 15 15 N 1.47020 * 107.27163 * 22.19574 * 14 13 11 16 16 C 1.34779 * 125.64553 * 181.03801 * 15 14 13 17 17 O 1.21688 * 119.99686 * 174.71503 * 16 15 14 18 18 C 1.46680 * 120.00127 * 354.71575 * 16 15 14 19 19 C 1.35658 * 126.12954 * 185.10475 * 18 16 15 20 20 N 1.30946 * 114.19123 * 179.78514 * 19 18 16 21 21 C 1.29428 * 117.36429 * 0.52904 * 20 19 18 22 22 C 1.50698 * 124.80692 * 179.68504 * 21 20 19 23 23 C 1.53002 * 109.46909 * 90.02408 * 22 21 20 24 24 C 1.53004 * 117.49990 * 243.74474 * 23 22 21 25 25 C 1.53000 * 117.49699 * 175.08576 * 23 22 21 26 26 S 1.70957 * 110.38867 * 359.70813 * 21 20 19 27 27 C 1.47417 * 108.70465 * 1.05222 * 15 14 13 28 28 H 1.08999 * 109.46779 * 265.62567 * 1 2 3 29 29 H 1.09004 * 109.47070 * 25.62653 * 1 2 3 30 30 H 1.08996 * 109.47331 * 145.62448 * 1 2 3 31 31 H 0.97002 * 120.00309 * 180.02562 * 6 5 3 32 32 H 1.09005 * 110.71712 * 88.05734 * 13 11 2 33 33 H 1.09000 * 110.86776 * 324.86366 * 13 11 2 34 34 H 1.09001 * 109.88195 * 262.76863 * 14 13 11 35 35 H 1.09000 * 110.01035 * 141.68259 * 14 13 11 36 36 H 1.08006 * 122.90674 * 359.97125 * 19 18 16 37 37 H 1.08998 * 109.47081 * 210.01993 * 22 21 20 38 38 H 1.08995 * 109.47291 * 330.02644 * 22 21 20 39 39 H 1.09005 * 115.55286 * 29.42041 * 23 22 21 40 40 H 1.09006 * 117.49439 * 0.02562 * 24 23 22 41 41 H 1.08997 * 117.50014 * 145.01955 * 24 23 22 42 42 H 1.08997 * 117.50039 * 214.97889 * 25 23 22 43 43 H 1.09000 * 117.49855 * 0.02562 * 25 23 22 44 44 H 1.09011 * 110.36612 * 94.71045 * 27 15 14 45 45 H 1.08996 * 110.37262 * 217.03301 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0370 1.2971 0.6056 5 6 1.7033 2.2451 -0.7783 6 7 2.0823 3.4738 -0.4972 7 14 0.5648 1.9266 -2.2246 8 1 -0.8440 2.1230 -1.7981 9 1 0.8853 2.8715 -3.3244 10 1 0.7479 0.5320 -2.7010 11 6 2.1975 -1.2687 -0.0006 12 1 3.2730 -1.0970 -0.0440 13 6 1.7321 -2.1792 -1.1675 14 6 2.0381 -3.5976 -0.6424 15 7 2.0991 -3.5164 0.8242 16 6 2.3644 -4.5422 1.6573 17 8 2.4844 -4.3407 2.8514 18 6 2.5086 -5.9012 1.1247 19 6 2.6777 -7.0324 1.8541 20 7 2.7768 -8.1235 1.1369 21 6 2.7142 -7.9975 -0.1497 22 6 2.8157 -9.1363 -1.1315 23 6 1.4189 -9.6942 -1.4116 24 6 1.1387 -11.1394 -0.9946 25 6 1.2947 -10.7863 -2.4758 26 16 2.5008 -6.3562 -0.5777 27 6 1.8217 -2.1274 1.2328 28 1 -0.3633 -0.0784 1.0247 29 1 -0.3633 0.9266 -0.4445 30 1 -0.3634 -0.8481 -0.5802 31 1 1.7701 4.2140 -1.0409 32 1 2.3046 -1.9706 -2.0713 33 1 0.6647 -2.0582 -1.3525 34 1 2.9957 -3.9397 -1.0351 35 1 1.2475 -4.2852 -0.9430 36 1 2.7236 -7.0334 2.9332 37 1 3.2563 -8.7762 -2.0612 38 1 3.4436 -9.9225 -0.7124 39 1 0.6011 -8.9784 -1.3272 40 1 1.9494 -11.6925 -0.5203 41 1 0.1365 -11.3745 -0.6361 42 1 0.3952 -10.7894 -3.0913 43 1 2.2083 -11.1077 -2.9762 44 1 0.7650 -2.0061 1.4716 45 1 2.4388 -1.8531 2.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971998118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = 49.039592 kcal Electronic energy + Delta-G solvation = -26098.297202 eV Core-core repulsion = 22436.722856 eV Total energy + Delta-G solvation = -3661.574347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45369 -40.67615 -39.00421 -38.29475 -36.71469 -33.92012 -32.99598 -31.79330 -30.32095 -29.28375 -28.05911 -26.13383 -25.05118 -24.04802 -23.18870 -22.41037 -21.71621 -21.06559 -19.82473 -19.51498 -19.03430 -17.88959 -17.70806 -17.17409 -16.87580 -16.32727 -16.11127 -15.67133 -15.59809 -15.25345 -14.91893 -14.75011 -14.68614 -14.39095 -14.35334 -14.10808 -13.94953 -13.58393 -13.55956 -13.12920 -12.77281 -12.54268 -12.48479 -12.42710 -12.31117 -12.30387 -12.07647 -11.64061 -11.54451 -11.43166 -11.26659 -10.88302 -10.70872 -10.62800 -10.54936 -10.14337 -9.70513 -8.77400 -8.20456 -5.66942 -0.85729 0.10213 0.51837 1.30332 1.36099 1.45665 1.58091 1.70550 2.01447 2.43816 2.86597 2.99699 3.04061 3.23426 3.37826 3.70392 3.79528 3.86889 3.92393 4.03234 4.03662 4.16102 4.19741 4.21525 4.30439 4.49258 4.52342 4.54653 4.66216 4.72951 4.75140 4.76018 4.86325 4.89686 4.98388 5.01393 5.06285 5.09488 5.18821 5.28647 5.28927 5.31827 5.91702 6.17579 6.25816 6.55898 6.82698 6.94318 7.56336 7.98752 8.98257 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.020663 B = 0.002587 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.731913 B =10822.521952 C =11761.354472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.605 5.605 3 C -0.268 4.268 4 H 0.036 0.964 5 C -0.021 4.021 6 N -0.949 5.949 7 Si 0.954 3.046 8 H -0.277 1.277 9 H -0.311 1.311 10 H -0.239 1.239 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.141 4.141 14 C 0.093 3.907 15 N -0.608 5.608 16 C 0.604 3.396 17 O -0.574 6.574 18 C -0.318 4.318 19 C 0.119 3.881 20 N -0.498 5.498 21 C 0.050 3.950 22 C -0.016 4.016 23 C -0.161 4.161 24 C -0.185 4.185 25 C -0.160 4.160 26 S 0.246 5.754 27 C 0.099 3.901 28 H 0.022 0.978 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.183 0.817 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.070 0.930 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.151 -30.168 -8.837 31.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.328 5.328 3 C -0.398 4.398 4 H 0.053 0.947 5 C -0.217 4.217 6 N -0.592 5.592 7 Si 0.781 3.219 8 H -0.204 1.204 9 H -0.239 1.239 10 H -0.162 1.162 11 C 0.058 3.942 12 H 0.094 0.906 13 C -0.180 4.180 14 C -0.030 4.030 15 N -0.341 5.341 16 C 0.393 3.607 17 O -0.456 6.456 18 C -0.443 4.443 19 C -0.041 4.041 20 N -0.213 5.213 21 C -0.223 4.223 22 C -0.057 4.057 23 C -0.181 4.181 24 C -0.222 4.222 25 C -0.197 4.197 26 S 0.505 5.495 27 C -0.026 4.026 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.200 0.800 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.108 -29.946 -9.004 31.341 hybrid contribution -0.320 0.838 1.179 1.481 sum -2.428 -29.108 -7.825 30.239 Atomic orbital electron populations 1.21461 0.83407 1.00016 0.99229 1.43925 1.01419 1.01098 1.86389 1.18581 1.10602 0.89397 1.21219 0.94660 1.26261 1.00571 0.94679 1.00232 1.70002 1.49295 0.99435 1.40509 0.85689 0.78053 0.78990 0.79148 1.20420 1.23937 1.16227 1.21623 0.96268 0.84442 0.91876 0.90646 1.23117 1.03535 0.91789 0.99576 1.22355 1.03356 0.99108 0.78208 1.48290 1.68627 1.08815 1.08334 1.16676 0.76363 0.82749 0.84873 1.90812 1.53675 1.84682 1.16436 1.25521 1.21574 0.98067 0.99096 1.22211 0.94863 0.84867 1.02112 1.66326 1.18475 1.31119 1.05361 1.28184 0.98656 1.00928 0.94538 1.20095 0.97125 0.92815 0.95617 1.22154 0.96778 0.92617 1.06528 1.23134 1.03256 0.97146 0.98630 1.23111 1.04485 1.00686 0.91444 1.83887 1.63397 1.00228 1.02005 1.22683 1.00771 0.79733 0.99381 0.95952 0.94808 0.91303 0.92669 0.88434 0.89554 0.89069 0.88723 0.80045 0.86376 0.87989 0.88260 0.88301 0.89014 0.87852 0.87139 0.91172 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.98 8.33 127.77 1.06 5.05 16 2 N -0.61 -26.62 2.47 -695.02 -1.72 -28.33 16 3 C -0.27 -14.72 9.85 84.03 0.83 -13.89 16 4 H 0.04 2.20 8.06 -2.91 -0.02 2.17 16 5 C -0.02 -1.15 5.29 84.86 0.45 -0.71 16 6 N -0.95 -58.18 13.97 21.65 0.30 -57.88 16 7 Si 0.95 43.19 25.05 68.60 1.72 44.91 16 8 H -0.28 -12.06 6.72 99.48 0.67 -11.39 16 9 H -0.31 -14.47 7.11 99.48 0.71 -13.76 16 10 H -0.24 -9.64 7.11 99.48 0.71 -8.94 16 11 C 0.17 5.93 3.54 46.39 0.16 6.10 16 12 H 0.08 2.89 7.96 -2.39 -0.02 2.87 16 13 C -0.14 -3.66 6.50 31.78 0.21 -3.45 16 14 C 0.09 2.01 5.20 86.73 0.45 2.46 16 15 N -0.61 -17.82 3.33 -816.50 -2.72 -20.54 16 16 C 0.60 19.14 7.81 86.45 0.67 19.81 16 17 O -0.57 -22.69 17.10 -4.31 -0.07 -22.77 16 18 C -0.32 -7.91 6.40 23.88 0.15 -7.75 16 19 C 0.12 2.90 11.09 84.23 0.93 3.83 16 20 N -0.50 -10.99 10.51 -190.30 -2.00 -12.99 16 21 C 0.05 0.83 6.59 88.46 0.58 1.42 16 22 C -0.02 -0.16 6.07 29.85 0.18 0.02 16 23 C -0.16 -1.61 5.72 -10.79 -0.06 -1.67 16 24 C -0.18 -1.82 10.18 30.62 0.31 -1.51 16 25 C -0.16 -1.10 10.25 30.62 0.31 -0.79 16 26 S 0.25 3.92 18.68 -56.49 -1.06 2.86 16 27 C 0.10 3.40 6.53 86.86 0.57 3.97 16 28 H 0.02 0.84 7.93 -2.39 -0.02 0.83 16 29 H 0.03 1.43 3.74 -2.39 -0.01 1.42 16 30 H 0.07 2.15 6.02 -2.39 -0.01 2.14 16 31 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 32 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.09 2.16 6.02 -2.39 -0.01 2.15 16 34 H 0.09 1.65 7.08 -2.39 -0.02 1.63 16 35 H 0.09 1.61 6.83 -2.39 -0.02 1.59 16 36 H 0.18 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.98 7.87 -2.39 -0.02 0.96 16 39 H 0.10 1.14 8.07 -2.38 -0.02 1.12 16 40 H 0.10 0.94 8.03 -2.38 -0.02 0.92 16 41 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 2.41 7.11 -2.38 -0.02 2.39 16 45 H 0.05 2.16 7.99 -2.39 -0.02 2.14 16 Total: -1.00 -72.10 371.20 2.25 -69.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.97 Total: 12.01 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 6.82 Total: 12.88 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -6.13 Total: -119.74 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.07 Total: -22.77 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.72 Total: 44.91 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.06 Total: 2.86 kcal Total: -72.10 2.25 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971998118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.894 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds