Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 120.00063 * 2 1 4 4 H 1.08001 * 120.00025 * 204.82465 * 3 2 1 5 5 C 1.38817 * 120.00159 * 24.83522 * 3 2 1 6 6 N 1.31616 * 119.99566 * 5.91462 * 5 3 2 7 7 Si 1.86801 * 119.99883 * 185.91917 * 5 3 2 8 8 H 1.48506 * 109.46961 * 89.99852 * 7 5 3 9 9 H 1.48496 * 109.46885 * 209.99312 * 7 5 3 10 10 H 1.48493 * 109.47263 * 329.99807 * 7 5 3 11 11 C 1.46498 * 119.99565 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.63973 * 176.85742 * 11 2 1 13 13 C 1.55156 * 110.72494 * 300.00326 * 11 2 1 14 14 C 1.54906 * 101.58390 * 153.86837 * 13 11 2 15 15 N 1.47429 * 104.83041 * 322.99057 * 14 13 11 16 16 C 1.34779 * 125.64773 * 204.09636 * 15 14 13 17 17 O 1.21678 * 120.00171 * 183.70703 * 16 15 14 18 18 C 1.46688 * 119.99723 * 3.70617 * 16 15 14 19 19 C 1.35668 * 126.12742 * 173.29113 * 18 16 15 20 20 N 1.30941 * 114.18765 * 179.70956 * 19 18 16 21 21 C 1.29425 * 117.36690 * 0.26285 * 20 19 18 22 22 C 1.50701 * 124.80397 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47180 * 90.02793 * 22 21 20 24 24 C 1.53005 * 117.49645 * 243.74547 * 23 22 21 25 25 C 1.53006 * 117.49945 * 175.08744 * 23 22 21 26 26 S 1.70950 * 110.39171 * 0.02562 * 21 20 19 27 27 C 1.47021 * 108.70375 * 24.35403 * 15 14 13 28 28 H 1.08998 * 109.47245 * 275.17896 * 1 2 3 29 29 H 1.09002 * 109.47165 * 35.17630 * 1 2 3 30 30 H 1.08997 * 109.47346 * 155.17695 * 1 2 3 31 31 H 0.97010 * 119.99359 * 180.02562 * 6 5 3 32 32 H 1.09002 * 111.00191 * 35.78932 * 13 11 2 33 33 H 1.09007 * 111.03677 * 271.95817 * 13 11 2 34 34 H 1.09000 * 110.36401 * 204.15369 * 14 13 11 35 35 H 1.08999 * 110.46222 * 81.87694 * 14 13 11 36 36 H 1.07998 * 122.90425 * 359.97259 * 19 18 16 37 37 H 1.09001 * 109.46930 * 210.02936 * 22 21 20 38 38 H 1.09000 * 109.47203 * 330.02447 * 22 21 20 39 39 H 1.08996 * 115.54958 * 29.41403 * 23 22 21 40 40 H 1.09000 * 117.50064 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.49532 * 145.02288 * 24 23 22 42 42 H 1.08993 * 117.49720 * 214.97429 * 25 23 22 43 43 H 1.09005 * 117.49556 * 359.97438 * 25 23 22 44 44 H 1.09001 * 109.87411 * 118.12986 * 27 15 14 45 45 H 1.08996 * 109.88506 * 239.29295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2291 -0.3927 5 6 1.5519 2.3325 0.5049 6 7 0.3748 2.2582 1.0890 7 14 2.4182 3.9807 0.3553 8 1 2.0219 4.6344 -0.9179 9 1 2.0330 4.8478 1.4976 10 1 3.8881 3.7702 0.3671 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0924 -0.0554 13 6 1.8434 -2.1065 1.2576 14 6 2.1170 -3.5472 0.7585 15 7 1.6777 -3.5488 -0.6488 16 6 1.2946 -4.6337 -1.3509 17 8 1.0148 -4.5275 -2.5303 18 6 1.2152 -5.9424 -0.6931 19 6 0.7267 -7.0840 -1.2397 20 7 0.7729 -8.1225 -0.4436 21 6 1.2609 -7.9424 0.7415 22 6 1.3923 -9.0169 1.7901 23 6 2.7540 -9.7006 1.6518 24 6 2.7647 -11.1851 1.2812 25 6 3.1286 -10.7479 2.7024 26 16 1.7340 -6.3129 0.9496 27 6 1.7325 -2.1719 -1.1614 28 1 -0.3633 0.0928 1.0234 29 1 -0.3633 0.8400 -0.5920 30 1 -0.3634 -0.9327 -0.4314 31 1 -0.0431 3.0596 1.4415 32 1 0.7955 -1.9795 1.5294 33 1 2.4952 -1.8522 2.0936 34 1 1.5372 -4.2658 1.3377 35 1 3.1803 -3.7778 0.8242 36 1 0.3376 -7.1329 -2.2460 37 1 1.3091 -8.5699 2.7807 38 1 0.6004 -9.7538 1.6564 39 1 3.5550 -9.0770 1.2548 40 1 1.8017 -11.6744 1.1356 41 1 3.5731 -11.5381 0.6409 42 1 4.1761 -10.8135 2.9963 43 1 2.4051 -10.9494 3.4924 44 1 2.4417 -2.1118 -1.9869 45 1 0.7429 -1.8615 -1.4967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971998119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = 68.325403 kcal Electronic energy + Delta-G solvation = -26041.638586 eV Core-core repulsion = 22380.900535 eV Total energy + Delta-G solvation = -3660.738051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.28533 -39.54387 -37.87662 -37.35760 -34.89781 -32.28634 -31.61671 -29.97068 -29.19182 -27.75901 -26.10965 -24.97652 -23.64426 -22.76428 -22.45845 -21.41198 -21.12004 -19.30824 -18.88729 -18.45879 -17.14533 -16.57058 -16.34407 -15.95747 -15.59757 -15.22859 -14.81557 -14.70461 -14.26163 -13.82615 -13.64563 -13.59820 -13.43178 -13.14487 -12.73518 -12.50702 -12.44982 -12.04834 -11.96636 -11.90606 -11.69900 -11.43406 -10.99224 -10.88788 -10.82535 -10.64899 -10.48429 -10.41623 -10.35864 -10.06521 -10.02468 -9.95012 -9.68318 -9.50189 -9.11208 -8.62821 -8.44308 -6.86445 -5.80662 -3.31105 0.10719 1.01331 1.43997 2.35499 3.00115 3.19341 3.33833 3.35951 3.40352 3.41213 3.75766 4.33433 4.40848 4.46834 4.48831 4.57185 4.74549 4.85851 5.03443 5.13626 5.16450 5.22762 5.24183 5.27892 5.30272 5.41228 5.45459 5.51462 5.66129 5.72053 5.79089 5.80932 5.89512 5.93956 6.19377 6.27757 6.42913 6.53836 6.76509 6.78733 7.34515 7.43828 7.57382 7.68771 7.74701 8.13268 8.31371 9.14547 9.74998 10.24199 11.23548 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.002349 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.499465 B =11917.391850 C =12497.118650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.909 3.091 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.081 0.919 13 C -0.146 4.146 14 C 0.090 3.910 15 N -0.605 5.605 16 C 0.603 3.397 17 O -0.531 6.531 18 C -0.284 4.284 19 C 0.115 3.885 20 N -0.477 5.477 21 C 0.036 3.964 22 C -0.015 4.015 23 C -0.151 4.151 24 C -0.173 4.173 25 C -0.176 4.176 26 S 0.191 5.809 27 C 0.088 3.912 28 H 0.033 0.967 29 H 0.046 0.954 30 H -0.001 1.001 31 H 0.254 0.746 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.186 0.814 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -23.414 4.854 24.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.739 3.261 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.099 0.901 13 C -0.187 4.187 14 C -0.034 4.034 15 N -0.338 5.338 16 C 0.390 3.610 17 O -0.410 6.410 18 C -0.408 4.408 19 C -0.043 4.043 20 N -0.191 5.191 21 C -0.239 4.239 22 C -0.056 4.056 23 C -0.170 4.170 24 C -0.210 4.210 25 C -0.213 4.213 26 S 0.449 5.551 27 C -0.036 4.036 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.203 0.797 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.090 -23.194 4.980 24.073 hybrid contribution -0.016 0.835 -0.889 1.220 sum 4.074 -22.359 4.090 23.092 Atomic orbital electron populations 1.20856 0.82304 0.95607 0.99670 1.43856 1.01947 0.99780 1.85096 1.19223 0.99379 0.85756 1.34674 0.91187 1.25121 0.97306 0.98817 0.98022 1.70059 1.16081 1.27717 1.41231 0.86191 0.79050 0.83652 0.77226 1.21398 1.21641 1.20406 1.21309 0.96475 0.85991 0.89917 0.90086 1.23401 1.03281 0.91306 1.00663 1.22622 0.99493 0.99711 0.81624 1.48339 1.64492 1.07966 1.13038 1.16360 0.77834 0.81266 0.85512 1.90833 1.50759 1.84897 1.14559 1.25805 1.15612 1.00442 0.98983 1.22138 0.96359 0.85136 1.00630 1.66253 1.17952 1.32167 1.02696 1.27701 1.00049 0.99757 0.96348 1.19871 0.97177 0.94192 0.94332 1.22177 0.97585 0.92143 1.05131 1.23063 1.03443 0.96444 0.98071 1.23029 1.02520 1.03045 0.92687 1.84348 1.57144 1.03016 1.10567 1.22841 1.02897 0.78881 0.98984 0.94867 0.93512 0.98223 0.93606 0.90331 0.89896 0.91294 0.90725 0.79685 0.88951 0.88612 0.87573 0.88427 0.88750 0.88502 0.88460 0.91580 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.81 7.72 59.85 0.46 4.28 16 2 N -0.59 -13.90 2.94 -171.38 -0.50 -14.41 16 3 C -0.26 -6.82 9.61 -15.06 -0.14 -6.97 16 4 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 5 C 0.01 0.16 5.23 -17.43 -0.09 0.07 16 6 N -0.91 -25.47 10.46 55.49 0.58 -24.89 16 7 Si 0.91 21.18 29.56 -169.99 -5.02 16.15 16 8 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 C 0.17 3.29 3.43 -66.09 -0.23 3.07 16 12 H 0.08 1.50 7.94 -51.93 -0.41 1.08 16 13 C -0.15 -2.33 6.66 -24.58 -0.16 -2.50 16 14 C 0.09 1.20 5.65 -2.53 -0.01 1.19 16 15 N -0.61 -9.78 3.33 -172.05 -0.57 -10.35 16 16 C 0.60 10.13 7.81 -12.85 -0.10 10.03 16 17 O -0.53 -10.55 17.20 5.21 0.09 -10.47 16 18 C -0.28 -3.93 6.39 -37.09 -0.24 -4.16 16 19 C 0.11 1.52 11.10 -18.85 -0.21 1.31 16 20 N -0.48 -5.93 10.51 -11.50 -0.12 -6.05 16 21 C 0.04 0.37 6.59 -13.29 -0.09 0.28 16 22 C -0.02 -0.11 6.07 -27.88 -0.17 -0.28 16 23 C -0.15 -1.04 5.72 -90.62 -0.52 -1.56 16 24 C -0.17 -1.10 10.18 -26.69 -0.27 -1.38 16 25 C -0.18 -0.95 10.26 -26.69 -0.27 -1.22 16 26 S 0.19 1.98 18.74 -107.50 -2.01 -0.04 16 27 C 0.09 1.59 6.41 -3.06 -0.02 1.57 16 28 H 0.03 0.85 7.33 -51.93 -0.38 0.47 16 29 H 0.05 1.22 7.27 -51.93 -0.38 0.84 16 30 H 0.00 -0.01 6.18 -51.93 -0.32 -0.33 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 32 H 0.08 1.38 7.34 -51.93 -0.38 1.00 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.82 4.95 -29.16 -0.14 0.68 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.67 7.88 -51.93 -0.41 0.26 16 39 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.10 0.60 8.03 -51.93 -0.42 0.18 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.57 6.02 -51.93 -0.31 1.25 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -30.91 375.10 -10.48 -41.39 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.50 Total: -0.72 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -2.07 Total: 3.72 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.62 Total: -55.71 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.01 Total: -0.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.91 -10.48 -41.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971998119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.717 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds