Wall clock time and date at job start Tue Mar 31 2020 18:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36932 * 120.00063 * 2 1 4 4 H 1.08001 * 120.00025 * 204.82465 * 3 2 1 5 5 C 1.38817 * 120.00159 * 24.83522 * 3 2 1 6 6 N 1.31616 * 119.99566 * 5.91462 * 5 3 2 7 7 Si 1.86801 * 119.99883 * 185.91917 * 5 3 2 8 8 H 1.48506 * 109.46961 * 89.99852 * 7 5 3 9 9 H 1.48496 * 109.46885 * 209.99312 * 7 5 3 10 10 H 1.48493 * 109.47263 * 329.99807 * 7 5 3 11 11 C 1.46498 * 119.99565 * 179.97438 * 2 1 3 12 12 H 1.09001 * 110.63973 * 176.85742 * 11 2 1 13 13 C 1.55156 * 110.72494 * 300.00326 * 11 2 1 14 14 C 1.54906 * 101.58390 * 153.86837 * 13 11 2 15 15 N 1.47429 * 104.83041 * 322.99057 * 14 13 11 16 16 C 1.34779 * 125.64773 * 204.09636 * 15 14 13 17 17 O 1.21678 * 120.00171 * 183.70703 * 16 15 14 18 18 C 1.46688 * 119.99723 * 3.70617 * 16 15 14 19 19 C 1.35668 * 126.12742 * 173.29113 * 18 16 15 20 20 N 1.30941 * 114.18765 * 179.70956 * 19 18 16 21 21 C 1.29425 * 117.36690 * 0.26285 * 20 19 18 22 22 C 1.50701 * 124.80397 * 179.97438 * 21 20 19 23 23 C 1.52995 * 109.47180 * 90.02793 * 22 21 20 24 24 C 1.53005 * 117.49645 * 243.74547 * 23 22 21 25 25 C 1.53006 * 117.49945 * 175.08744 * 23 22 21 26 26 S 1.70950 * 110.39171 * 0.02562 * 21 20 19 27 27 C 1.47021 * 108.70375 * 24.35403 * 15 14 13 28 28 H 1.08998 * 109.47245 * 275.17896 * 1 2 3 29 29 H 1.09002 * 109.47165 * 35.17630 * 1 2 3 30 30 H 1.08997 * 109.47346 * 155.17695 * 1 2 3 31 31 H 0.97010 * 119.99359 * 180.02562 * 6 5 3 32 32 H 1.09002 * 111.00191 * 35.78932 * 13 11 2 33 33 H 1.09007 * 111.03677 * 271.95817 * 13 11 2 34 34 H 1.09000 * 110.36401 * 204.15369 * 14 13 11 35 35 H 1.08999 * 110.46222 * 81.87694 * 14 13 11 36 36 H 1.07998 * 122.90425 * 359.97259 * 19 18 16 37 37 H 1.09001 * 109.46930 * 210.02936 * 22 21 20 38 38 H 1.09000 * 109.47203 * 330.02447 * 22 21 20 39 39 H 1.08996 * 115.54958 * 29.41403 * 23 22 21 40 40 H 1.09000 * 117.50064 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.49532 * 145.02288 * 24 23 22 42 42 H 1.08993 * 117.49720 * 214.97429 * 25 23 22 43 43 H 1.09005 * 117.49556 * 359.97438 * 25 23 22 44 44 H 1.09001 * 109.87411 * 118.12986 * 27 15 14 45 45 H 1.08996 * 109.88506 * 239.29295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1548 1.2291 -0.3927 5 6 1.5519 2.3325 0.5049 6 7 0.3748 2.2582 1.0890 7 14 2.4182 3.9807 0.3553 8 1 2.0219 4.6344 -0.9179 9 1 2.0330 4.8478 1.4976 10 1 3.8881 3.7702 0.3671 11 6 2.1974 -1.2688 0.0006 12 1 3.2716 -1.0924 -0.0554 13 6 1.8434 -2.1065 1.2576 14 6 2.1170 -3.5472 0.7585 15 7 1.6777 -3.5488 -0.6488 16 6 1.2946 -4.6337 -1.3509 17 8 1.0148 -4.5275 -2.5303 18 6 1.2152 -5.9424 -0.6931 19 6 0.7267 -7.0840 -1.2397 20 7 0.7729 -8.1225 -0.4436 21 6 1.2609 -7.9424 0.7415 22 6 1.3923 -9.0169 1.7901 23 6 2.7540 -9.7006 1.6518 24 6 2.7647 -11.1851 1.2812 25 6 3.1286 -10.7479 2.7024 26 16 1.7340 -6.3129 0.9496 27 6 1.7325 -2.1719 -1.1614 28 1 -0.3633 0.0928 1.0234 29 1 -0.3633 0.8400 -0.5920 30 1 -0.3634 -0.9327 -0.4314 31 1 -0.0431 3.0596 1.4415 32 1 0.7955 -1.9795 1.5294 33 1 2.4952 -1.8522 2.0936 34 1 1.5372 -4.2658 1.3377 35 1 3.1803 -3.7778 0.8242 36 1 0.3376 -7.1329 -2.2460 37 1 1.3091 -8.5699 2.7807 38 1 0.6004 -9.7538 1.6564 39 1 3.5550 -9.0770 1.2548 40 1 1.8017 -11.6744 1.1356 41 1 3.5731 -11.5381 0.6409 42 1 4.1761 -10.8135 2.9963 43 1 2.4051 -10.9494 3.4924 44 1 2.4417 -2.1118 -1.9869 45 1 0.7429 -1.8615 -1.4967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971998119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:25 Heat of formation + Delta-G solvation = 50.513170 kcal Electronic energy + Delta-G solvation = -26042.410982 eV Core-core repulsion = 22380.900535 eV Total energy + Delta-G solvation = -3661.510448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.44025 -40.65480 -38.92810 -38.28458 -36.62564 -33.65335 -32.86095 -31.47707 -30.26284 -29.06675 -28.08691 -26.06099 -25.00009 -23.97257 -23.18496 -22.51345 -21.71486 -20.89435 -19.85420 -19.55595 -18.96775 -17.71146 -17.68308 -17.13461 -16.64522 -16.35110 -15.97125 -15.71296 -15.60693 -15.10227 -15.05688 -14.72442 -14.42632 -14.37055 -14.18704 -14.00337 -13.53182 -13.41498 -13.13046 -12.78493 -12.72719 -12.54780 -12.51297 -12.37522 -12.30699 -12.27587 -12.07217 -11.85245 -11.62168 -11.42542 -11.26688 -10.87761 -10.64895 -10.63717 -10.47567 -10.10964 -9.68599 -8.80967 -7.83124 -5.35031 -0.85033 0.10163 0.51804 1.31746 1.49029 1.50315 1.58596 1.73023 2.02508 2.50923 2.87275 3.00331 3.28546 3.39303 3.48883 3.73826 3.80444 3.87624 3.94935 4.03980 4.15958 4.18956 4.21156 4.23910 4.35910 4.48469 4.53141 4.66621 4.68014 4.75729 4.86683 4.88108 4.90428 4.99722 5.07889 5.09920 5.18180 5.29147 5.31313 5.32283 5.36076 5.65009 5.71657 6.26245 6.32505 6.56596 6.83849 7.13764 7.82157 8.27758 9.20072 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025391 B = 0.002349 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.499465 B =11917.391850 C =12497.118650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.049 4.049 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.291 1.291 9 H -0.295 1.295 10 H -0.265 1.265 11 C 0.168 3.832 12 H 0.090 0.910 13 C -0.136 4.136 14 C 0.097 3.903 15 N -0.608 5.608 16 C 0.603 3.397 17 O -0.574 6.574 18 C -0.320 4.320 19 C 0.119 3.881 20 N -0.499 5.499 21 C 0.047 3.953 22 C -0.016 4.016 23 C -0.161 4.161 24 C -0.184 4.184 25 C -0.160 4.160 26 S 0.245 5.755 27 C 0.098 3.902 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.018 0.982 31 H 0.248 0.752 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.183 0.817 37 H 0.117 0.883 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 -25.386 6.758 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.094 0.906 5 C -0.245 4.245 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.218 1.218 9 H -0.222 1.222 10 H -0.189 1.189 11 C 0.059 3.941 12 H 0.108 0.892 13 C -0.176 4.176 14 C -0.026 4.026 15 N -0.340 5.340 16 C 0.392 3.608 17 O -0.456 6.456 18 C -0.444 4.444 19 C -0.040 4.040 20 N -0.213 5.213 21 C -0.227 4.227 22 C -0.057 4.057 23 C -0.181 4.181 24 C -0.221 4.221 25 C -0.197 4.197 26 S 0.505 5.495 27 C -0.026 4.026 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.200 0.800 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.793 -25.202 6.915 26.768 hybrid contribution -0.511 1.283 -1.475 2.021 sum 5.282 -23.919 5.440 25.092 Atomic orbital electron populations 1.20491 0.83012 0.95099 0.97818 1.44002 1.01845 1.01016 1.85516 1.19572 0.99517 0.86821 1.33546 0.90551 1.25857 0.98098 1.02016 0.98498 1.70222 1.17465 1.28008 1.42680 0.85210 0.78703 0.79672 0.76475 1.21785 1.22175 1.18928 1.21478 0.96410 0.84570 0.91593 0.89180 1.23222 1.02529 0.92337 0.99537 1.22746 1.01568 0.98401 0.79916 1.48353 1.64538 1.06985 1.14093 1.16716 0.76815 0.82180 0.85129 1.90798 1.52556 1.85752 1.16497 1.25533 1.18232 0.99047 1.01572 1.22213 0.95597 0.85317 1.00830 1.66335 1.19456 1.31908 1.03589 1.28308 0.97680 1.00541 0.96126 1.20089 0.97618 0.93603 0.94353 1.22147 0.97100 0.92279 1.06576 1.23135 1.03601 0.96203 0.99179 1.23114 1.03320 1.00956 0.92308 1.83948 1.55879 1.02419 1.07289 1.22509 1.01297 0.80176 0.98641 0.96958 0.96642 0.96394 0.94263 0.92108 0.88266 0.89397 0.87729 0.79995 0.86473 0.88064 0.88241 0.88324 0.88945 0.87787 0.87171 0.91794 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 7.72 127.77 0.99 9.87 16 2 N -0.60 -28.77 2.94 -696.13 -2.05 -30.82 16 3 C -0.26 -13.84 9.61 84.04 0.81 -13.03 16 4 H 0.08 3.82 7.82 -2.91 -0.02 3.80 16 5 C -0.05 -2.68 5.23 84.86 0.44 -2.23 16 6 N -0.94 -53.91 10.46 21.65 0.23 -53.68 16 7 Si 0.97 43.77 29.56 68.60 2.03 45.80 16 8 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 9 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 C 0.17 6.24 3.43 46.18 0.16 6.40 16 12 H 0.09 3.18 7.94 -2.39 -0.02 3.16 16 13 C -0.14 -4.11 6.66 31.98 0.21 -3.89 16 14 C 0.10 2.32 5.65 86.85 0.49 2.81 16 15 N -0.61 -19.02 3.33 -816.47 -2.72 -21.73 16 16 C 0.60 20.07 7.81 86.45 0.68 20.75 16 17 O -0.57 -23.36 17.20 -4.28 -0.07 -23.44 16 18 C -0.32 -8.47 6.39 23.88 0.15 -8.31 16 19 C 0.12 3.08 11.10 84.23 0.93 4.01 16 20 N -0.50 -11.64 10.51 -190.30 -2.00 -13.64 16 21 C 0.05 0.84 6.59 88.46 0.58 1.42 16 22 C -0.02 -0.18 6.07 29.85 0.18 0.00 16 23 C -0.16 -1.77 5.72 -10.79 -0.06 -1.83 16 24 C -0.18 -1.95 10.18 30.62 0.31 -1.64 16 25 C -0.16 -1.22 10.26 30.62 0.31 -0.91 16 26 S 0.25 4.34 18.74 -56.49 -1.06 3.28 16 27 C 0.10 3.56 6.41 86.73 0.56 4.11 16 28 H 0.01 0.64 7.33 -2.39 -0.02 0.63 16 29 H 0.01 0.82 7.27 -2.39 -0.02 0.80 16 30 H 0.02 0.79 6.18 -2.39 -0.01 0.78 16 31 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 32 H 0.06 2.08 7.34 -2.39 -0.02 2.06 16 33 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.09 1.80 4.95 -16.87 -0.08 1.72 16 35 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.18 4.61 8.06 -2.91 -0.02 4.58 16 37 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.10 7.88 -2.39 -0.02 1.08 16 39 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 40 H 0.10 1.01 8.03 -2.39 -0.02 0.99 16 41 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 2.17 6.02 -2.39 -0.01 2.15 16 Total: -1.00 -68.43 375.10 2.04 -66.39 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.93 Total: 10.30 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.75 Total: 17.53 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -6.53 Total: -119.87 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.07 Total: -23.44 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.06 Total: 3.28 kcal Total: -68.43 2.04 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971998119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.906 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds