Wall clock time and date at job start Tue Mar 31 2020 18:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99555 * 2 1 4 4 H 1.08001 * 119.99275 * 144.66654 * 3 2 1 5 5 C 1.38809 * 120.00670 * 324.66369 * 3 2 1 6 6 N 1.31613 * 120.00380 * 157.56549 * 5 3 2 7 7 Si 1.86800 * 119.99642 * 337.56771 * 5 3 2 8 8 H 1.48501 * 109.47471 * 95.53038 * 7 5 3 9 9 H 1.48503 * 109.47176 * 215.53074 * 7 5 3 10 10 H 1.48496 * 109.47254 * 335.52943 * 7 5 3 11 11 C 1.46495 * 120.00146 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64443 * 176.85796 * 11 2 1 13 13 C 1.55162 * 110.87298 * 53.60887 * 11 2 1 14 14 C 1.55131 * 101.48539 * 205.90231 * 13 11 2 15 15 N 1.47423 * 104.72399 * 37.29611 * 14 13 11 16 16 C 1.34768 * 125.64781 * 155.82064 * 15 14 13 17 17 O 1.21276 * 120.00251 * 179.69235 * 16 15 14 18 18 C 1.50705 * 120.00231 * 359.68664 * 16 15 14 19 19 C 1.50692 * 109.47497 * 180.02562 * 18 16 15 20 20 C 1.33640 * 122.74865 * 85.02554 * 19 18 16 21 21 S 1.76204 * 107.92647 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28187 * 0.02562 * 21 20 19 23 23 C 1.50700 * 124.91749 * 180.02562 * 22 21 20 24 24 C 1.52990 * 117.49759 * 8.71713 * 23 22 21 25 25 C 1.52996 * 117.49427 * 300.05666 * 23 22 21 26 26 N 1.29031 * 110.16539 * 359.97438 * 22 21 20 27 27 C 1.47018 * 108.70199 * 335.55317 * 15 14 13 28 28 H 1.08994 * 109.47241 * 268.32457 * 1 2 3 29 29 H 1.09004 * 109.46922 * 28.32847 * 1 2 3 30 30 H 1.09000 * 109.47318 * 148.32040 * 1 2 3 31 31 H 0.96997 * 120.00121 * 180.02562 * 6 5 3 32 32 H 1.08999 * 111.00261 * 324.14243 * 13 11 2 33 33 H 1.08997 * 111.00268 * 87.95043 * 13 11 2 34 34 H 1.09004 * 110.49357 * 278.45464 * 14 13 11 35 35 H 1.08999 * 110.34082 * 156.06271 * 14 13 11 36 36 H 1.09006 * 109.46652 * 60.00059 * 18 16 15 37 37 H 1.08999 * 109.47208 * 300.00885 * 18 16 15 38 38 H 1.07999 * 126.03985 * 0.24214 * 20 19 18 39 39 H 1.08993 * 115.54737 * 154.39328 * 23 22 21 40 40 H 1.09005 * 117.49994 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.50226 * 145.02627 * 24 23 22 42 42 H 1.09001 * 117.50110 * 214.97743 * 25 23 22 43 43 H 1.08998 * 117.50171 * 0.02562 * 25 23 22 44 44 H 1.09005 * 109.88266 * 120.70694 * 27 15 14 45 45 H 1.09006 * 109.88267 * 241.86957 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0804 1.2721 0.5410 5 6 1.6474 2.2774 -0.6952 6 7 2.0197 3.4959 -0.3653 7 14 0.4430 2.0167 -2.0991 8 1 -0.9457 2.1631 -1.5937 9 1 0.6928 3.0259 -3.1595 10 1 0.6244 0.6539 -2.6603 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7291 -2.1770 -1.1680 14 6 2.0621 -3.5875 -0.6148 15 7 1.7543 -3.5077 0.8248 16 6 1.4461 -4.5503 1.6211 17 8 1.2153 -4.3674 2.7975 18 6 1.3882 -5.9436 1.0497 19 6 1.0247 -6.9189 2.1394 20 6 -0.2396 -7.1718 2.4910 21 16 -0.2134 -8.3609 3.7910 22 6 1.4949 -8.3992 3.7331 23 6 2.3691 -9.2527 4.6154 24 6 1.6793 -10.2981 5.4940 25 6 2.2720 -9.0367 6.1269 26 7 1.9273 -7.5923 2.8238 27 6 1.8454 -2.1030 1.2491 28 1 -0.3633 -0.0300 1.0272 29 1 -0.3633 0.9046 -0.4877 30 1 -0.3634 -0.8745 -0.5397 31 1 1.6685 4.2586 -0.8509 32 1 0.6593 -2.0655 -1.3447 33 1 2.2963 -1.9705 -2.0755 34 1 3.1170 -3.8171 -0.7650 35 1 1.4371 -4.3402 -1.0952 36 1 2.3615 -6.2072 0.6355 37 1 0.6358 -5.9824 0.2620 38 1 -1.1217 -6.7292 2.0526 39 1 3.3465 -9.5059 4.2050 40 1 0.5932 -10.3690 5.4335 41 1 2.2031 -11.2392 5.6619 42 1 3.1854 -9.1484 6.7111 43 1 1.5756 -8.2777 6.4832 44 1 0.8885 -1.7757 1.6558 45 1 2.6272 -1.9928 2.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972489450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:31 Heat of formation + Delta-G solvation = 75.685450 kcal Electronic energy + Delta-G solvation = -26008.431303 eV Core-core repulsion = 22348.012407 eV Total energy + Delta-G solvation = -3660.418896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49535 -39.50592 -37.76676 -37.28548 -34.98231 -32.37276 -31.72715 -30.23155 -28.92312 -27.73959 -26.22247 -25.86763 -23.74046 -22.89475 -22.49470 -21.65538 -20.17471 -19.39668 -19.06299 -17.84266 -17.05469 -17.01675 -16.51214 -16.23204 -15.44467 -15.24708 -14.95390 -14.54174 -14.32488 -14.08860 -13.74004 -13.42025 -13.21989 -13.11093 -12.81144 -12.61393 -12.40577 -12.26802 -12.12741 -12.04598 -11.90057 -11.50352 -11.47257 -11.20619 -10.99685 -10.98928 -10.90503 -10.55366 -10.22264 -9.97403 -9.84802 -9.77556 -9.61254 -9.51697 -8.83562 -8.59303 -8.42266 -6.96676 -6.05263 -3.46865 0.49326 1.13206 1.51192 2.44804 2.75118 3.17099 3.26570 3.41421 3.41804 3.45992 3.66036 4.32562 4.45884 4.47186 4.48796 4.61672 4.78079 4.80938 4.90045 5.01431 5.08563 5.15178 5.16245 5.21839 5.36867 5.38524 5.41006 5.51233 5.58427 5.61359 5.64157 5.72219 5.85656 5.92601 6.07538 6.20300 6.31673 6.38141 6.46622 6.60134 6.68329 6.76812 7.57361 7.68812 7.95074 8.28247 8.31132 8.88196 9.62876 10.00729 11.09917 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.002171 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.362004 B =12893.327015 C =13071.172727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.596 5.596 3 C -0.274 4.274 4 H 0.082 0.918 5 C 0.034 3.966 6 N -0.897 5.897 7 Si 0.886 3.114 8 H -0.287 1.287 9 H -0.302 1.302 10 H -0.269 1.269 11 C 0.172 3.828 12 H 0.089 0.911 13 C -0.157 4.157 14 C 0.099 3.901 15 N -0.614 5.614 16 C 0.529 3.471 17 O -0.537 6.537 18 C -0.064 4.064 19 C 0.094 3.906 20 C -0.244 4.244 21 S 0.118 5.882 22 C 0.081 3.919 23 C -0.085 4.085 24 C -0.170 4.170 25 C -0.159 4.159 26 N -0.461 5.461 27 C 0.090 3.910 28 H 0.018 0.982 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.177 0.823 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 -28.731 4.660 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.318 5.318 3 C -0.402 4.402 4 H 0.100 0.900 5 C -0.167 4.167 6 N -0.538 5.538 7 Si 0.717 3.283 8 H -0.216 1.216 9 H -0.231 1.231 10 H -0.194 1.194 11 C 0.063 3.937 12 H 0.107 0.893 13 C -0.197 4.197 14 C -0.024 4.024 15 N -0.348 5.348 16 C 0.316 3.684 17 O -0.414 6.414 18 C -0.106 4.106 19 C -0.038 4.038 20 C -0.383 4.383 21 S 0.374 5.626 22 C -0.197 4.197 23 C -0.107 4.107 24 C -0.208 4.208 25 C -0.198 4.198 26 N -0.175 5.175 27 C -0.034 4.034 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.194 0.806 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.186 -28.915 5.813 29.665 hybrid contribution -0.539 0.768 -1.623 1.875 sum -3.725 -28.147 4.190 28.699 Atomic orbital electron populations 1.21350 0.84821 0.99067 0.98481 1.44007 1.00530 1.01412 1.85871 1.18804 1.08165 0.86246 1.27000 0.90025 1.25427 0.98241 0.95154 0.97833 1.69866 1.45991 0.97659 1.40273 0.86826 0.80371 0.77643 0.83496 1.21570 1.23069 1.19416 1.21465 0.97065 0.85340 0.89862 0.89285 1.23429 1.02637 0.93306 1.00358 1.22421 1.00448 0.99062 0.80498 1.48490 1.68492 1.07684 1.10184 1.19928 0.77189 0.85250 0.85996 1.90716 1.49488 1.85225 1.16005 1.20168 1.05195 0.89760 0.95500 1.19428 0.87698 0.98102 0.98602 1.26750 1.02119 1.05717 1.03733 1.83724 1.06568 1.38429 1.33884 1.25993 0.94870 0.99940 0.98933 1.20399 0.99519 0.99971 0.90808 1.23156 1.00642 0.94288 1.02672 1.23167 1.03856 0.99766 0.93011 1.65881 1.37362 1.07320 1.06904 1.22697 1.02192 0.79025 0.99517 0.96373 0.93527 0.94854 0.92590 0.90661 0.89986 0.91149 0.91164 0.87105 0.87303 0.80612 0.84909 0.88352 0.87236 0.87360 0.88125 0.91164 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.31 8.47 59.85 0.51 2.81 16 2 N -0.60 -13.69 2.53 -171.39 -0.43 -14.13 16 3 C -0.27 -7.46 9.88 -15.06 -0.15 -7.61 16 4 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 5 C 0.03 0.97 5.31 -17.43 -0.09 0.88 16 6 N -0.90 -27.00 13.97 55.49 0.78 -26.23 16 7 Si 0.89 21.74 24.94 -169.99 -4.24 17.50 16 8 H -0.29 -6.93 6.67 56.52 0.38 -6.55 16 9 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 C 0.17 3.20 3.43 -66.09 -0.23 2.97 16 12 H 0.09 1.67 7.95 -51.93 -0.41 1.26 16 13 C -0.16 -2.36 6.63 -24.46 -0.16 -2.52 16 14 C 0.10 1.18 6.70 -2.41 -0.02 1.17 16 15 N -0.61 -9.31 3.32 -170.38 -0.57 -9.88 16 16 C 0.53 8.29 7.84 -10.99 -0.09 8.20 16 17 O -0.54 -10.69 16.36 5.56 0.09 -10.60 16 18 C -0.06 -0.74 5.11 -29.04 -0.15 -0.88 16 19 C 0.09 1.22 5.23 -84.23 -0.44 0.78 16 20 C -0.24 -2.80 11.14 29.12 0.32 -2.48 16 21 S 0.12 1.17 21.94 -107.50 -2.36 -1.19 16 22 C 0.08 0.92 7.04 -13.45 -0.09 0.83 16 23 C -0.09 -0.72 6.33 -91.78 -0.58 -1.30 16 24 C -0.17 -0.99 10.02 -26.70 -0.27 -1.26 16 25 C -0.16 -1.11 10.24 -26.70 -0.27 -1.38 16 26 N -0.46 -6.37 10.53 -8.06 -0.08 -6.45 16 27 C 0.09 1.61 6.51 -3.06 -0.02 1.59 16 28 H 0.02 0.38 7.84 -51.93 -0.41 -0.02 16 29 H 0.05 1.09 3.05 -51.93 -0.16 0.93 16 30 H 0.03 0.62 6.00 -51.93 -0.31 0.31 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 32 H 0.07 1.18 6.03 -51.93 -0.31 0.87 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 36 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.11 0.93 7.85 -51.93 -0.41 0.52 16 38 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.13 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 0.56 7.23 -51.93 -0.38 0.18 16 41 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.39 6.97 -51.93 -0.36 1.03 16 45 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -34.31 374.32 -9.43 -43.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.52 Total: -0.20 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.73 Total: 1.80 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.31 Total: -56.68 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.24 Total: 17.50 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.36 Total: -1.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.31 -9.43 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972489450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.422 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds