Wall clock time and date at job start Tue Mar 31 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99555 * 2 1 4 4 H 1.08001 * 119.99275 * 144.66654 * 3 2 1 5 5 C 1.38809 * 120.00670 * 324.66369 * 3 2 1 6 6 N 1.31613 * 120.00380 * 157.56549 * 5 3 2 7 7 Si 1.86800 * 119.99642 * 337.56771 * 5 3 2 8 8 H 1.48501 * 109.47471 * 95.53038 * 7 5 3 9 9 H 1.48503 * 109.47176 * 215.53074 * 7 5 3 10 10 H 1.48496 * 109.47254 * 335.52943 * 7 5 3 11 11 C 1.46495 * 120.00146 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.64443 * 176.85796 * 11 2 1 13 13 C 1.55162 * 110.87298 * 53.60887 * 11 2 1 14 14 C 1.55131 * 101.48539 * 205.90231 * 13 11 2 15 15 N 1.47423 * 104.72399 * 37.29611 * 14 13 11 16 16 C 1.34768 * 125.64781 * 155.82064 * 15 14 13 17 17 O 1.21276 * 120.00251 * 179.69235 * 16 15 14 18 18 C 1.50705 * 120.00231 * 359.68664 * 16 15 14 19 19 C 1.50692 * 109.47497 * 180.02562 * 18 16 15 20 20 C 1.33640 * 122.74865 * 85.02554 * 19 18 16 21 21 S 1.76204 * 107.92647 * 179.97438 * 20 19 18 22 22 C 1.70976 * 90.28187 * 0.02562 * 21 20 19 23 23 C 1.50700 * 124.91749 * 180.02562 * 22 21 20 24 24 C 1.52990 * 117.49759 * 8.71713 * 23 22 21 25 25 C 1.52996 * 117.49427 * 300.05666 * 23 22 21 26 26 N 1.29031 * 110.16539 * 359.97438 * 22 21 20 27 27 C 1.47018 * 108.70199 * 335.55317 * 15 14 13 28 28 H 1.08994 * 109.47241 * 268.32457 * 1 2 3 29 29 H 1.09004 * 109.46922 * 28.32847 * 1 2 3 30 30 H 1.09000 * 109.47318 * 148.32040 * 1 2 3 31 31 H 0.96997 * 120.00121 * 180.02562 * 6 5 3 32 32 H 1.08999 * 111.00261 * 324.14243 * 13 11 2 33 33 H 1.08997 * 111.00268 * 87.95043 * 13 11 2 34 34 H 1.09004 * 110.49357 * 278.45464 * 14 13 11 35 35 H 1.08999 * 110.34082 * 156.06271 * 14 13 11 36 36 H 1.09006 * 109.46652 * 60.00059 * 18 16 15 37 37 H 1.08999 * 109.47208 * 300.00885 * 18 16 15 38 38 H 1.07999 * 126.03985 * 0.24214 * 20 19 18 39 39 H 1.08993 * 115.54737 * 154.39328 * 23 22 21 40 40 H 1.09005 * 117.49994 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.50226 * 145.02627 * 24 23 22 42 42 H 1.09001 * 117.50110 * 214.97743 * 25 23 22 43 43 H 1.08998 * 117.50171 * 0.02562 * 25 23 22 44 44 H 1.09005 * 109.88266 * 120.70694 * 27 15 14 45 45 H 1.09006 * 109.88267 * 241.86957 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0804 1.2721 0.5410 5 6 1.6474 2.2774 -0.6952 6 7 2.0197 3.4959 -0.3653 7 14 0.4430 2.0167 -2.0991 8 1 -0.9457 2.1631 -1.5937 9 1 0.6928 3.0259 -3.1595 10 1 0.6244 0.6539 -2.6603 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0922 -0.0564 13 6 1.7291 -2.1770 -1.1680 14 6 2.0621 -3.5875 -0.6148 15 7 1.7543 -3.5077 0.8248 16 6 1.4461 -4.5503 1.6211 17 8 1.2153 -4.3674 2.7975 18 6 1.3882 -5.9436 1.0497 19 6 1.0247 -6.9189 2.1394 20 6 -0.2396 -7.1718 2.4910 21 16 -0.2134 -8.3609 3.7910 22 6 1.4949 -8.3992 3.7331 23 6 2.3691 -9.2527 4.6154 24 6 1.6793 -10.2981 5.4940 25 6 2.2720 -9.0367 6.1269 26 7 1.9273 -7.5923 2.8238 27 6 1.8454 -2.1030 1.2491 28 1 -0.3633 -0.0300 1.0272 29 1 -0.3633 0.9046 -0.4877 30 1 -0.3634 -0.8745 -0.5397 31 1 1.6685 4.2586 -0.8509 32 1 0.6593 -2.0655 -1.3447 33 1 2.2963 -1.9705 -2.0755 34 1 3.1170 -3.8171 -0.7650 35 1 1.4371 -4.3402 -1.0952 36 1 2.3615 -6.2072 0.6355 37 1 0.6358 -5.9824 0.2620 38 1 -1.1217 -6.7292 2.0526 39 1 3.3465 -9.5059 4.2050 40 1 0.5932 -10.3690 5.4335 41 1 2.2031 -11.2392 5.6619 42 1 3.1854 -9.1484 6.7111 43 1 1.5756 -8.2777 6.4832 44 1 0.8885 -1.7757 1.6558 45 1 2.6272 -1.9928 2.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972489450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:30 Heat of formation + Delta-G solvation = 53.027222 kcal Electronic energy + Delta-G solvation = -26009.413837 eV Core-core repulsion = 22348.012407 eV Total energy + Delta-G solvation = -3661.401430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50576 -40.59305 -38.98381 -38.07160 -36.63696 -33.89799 -33.11926 -31.59981 -30.05399 -28.87986 -28.06997 -26.69022 -25.27384 -23.92094 -23.38211 -22.41189 -21.13337 -20.84407 -20.13690 -18.99726 -18.65865 -18.20931 -17.85256 -17.19572 -16.81222 -16.49141 -15.97616 -15.65358 -15.44791 -15.00259 -14.93570 -14.88910 -14.61677 -14.40314 -14.31653 -14.09659 -13.59869 -13.43697 -13.26103 -13.09446 -12.98109 -12.59866 -12.50746 -12.41892 -12.37392 -12.24698 -12.04985 -11.83223 -11.61575 -11.52150 -11.42769 -11.03873 -10.68359 -10.66994 -10.33452 -9.68541 -9.62718 -8.88217 -8.21657 -5.60795 -0.31791 0.36000 0.70079 1.32451 1.42892 1.52026 1.55204 1.57964 2.10003 2.41780 2.76526 3.01355 3.02052 3.28646 3.55016 3.69755 3.76544 3.79280 3.96044 4.00483 4.13944 4.19953 4.24295 4.31710 4.37657 4.38575 4.43458 4.51499 4.68224 4.69481 4.70557 4.71730 4.82990 4.89807 4.95836 4.99254 5.01636 5.11725 5.14406 5.23297 5.24622 5.35614 5.88184 6.13917 6.52387 6.75141 6.90558 7.10390 7.56945 7.97638 8.97665 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.030121 B = 0.002171 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.362004 B =12893.327015 C =13071.172727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.609 5.609 3 C -0.265 4.265 4 H 0.042 0.958 5 C -0.026 4.026 6 N -0.949 5.949 7 Si 0.955 3.045 8 H -0.280 1.280 9 H -0.310 1.310 10 H -0.245 1.245 11 C 0.165 3.835 12 H 0.079 0.921 13 C -0.147 4.147 14 C 0.104 3.896 15 N -0.613 5.613 16 C 0.526 3.474 17 O -0.589 6.589 18 C -0.053 4.053 19 C 0.069 3.931 20 C -0.258 4.258 21 S 0.155 5.845 22 C 0.066 3.934 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.162 4.162 26 N -0.498 5.498 27 C 0.101 3.899 28 H 0.014 0.986 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.193 0.807 39 H 0.135 0.865 40 H 0.101 0.899 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.175 -32.398 2.937 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.332 5.332 3 C -0.395 4.395 4 H 0.059 0.941 5 C -0.222 4.222 6 N -0.593 5.593 7 Si 0.784 3.216 8 H -0.207 1.207 9 H -0.239 1.239 10 H -0.168 1.168 11 C 0.057 3.943 12 H 0.098 0.902 13 C -0.187 4.187 14 C -0.018 4.018 15 N -0.346 5.346 16 C 0.316 3.684 17 O -0.470 6.470 18 C -0.095 4.095 19 C -0.063 4.063 20 C -0.397 4.397 21 S 0.411 5.589 22 C -0.211 4.211 23 C -0.131 4.131 24 C -0.185 4.185 25 C -0.201 4.201 26 N -0.212 5.212 27 C -0.025 4.025 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.132 0.868 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.210 0.790 39 H 0.153 0.847 40 H 0.119 0.881 41 H 0.151 0.849 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.538 -32.655 4.064 33.219 hybrid contribution -0.063 1.859 -0.891 2.062 sum -4.601 -30.797 3.173 31.300 Atomic orbital electron populations 1.21393 0.83826 0.99821 0.98699 1.44041 1.01266 1.01520 1.86352 1.18665 1.06901 0.88226 1.25701 0.94063 1.26120 1.01140 0.94610 1.00363 1.70010 1.48783 0.98682 1.41816 0.85700 0.78107 0.78333 0.79477 1.20739 1.23913 1.16805 1.21553 0.96341 0.84320 0.92083 0.90235 1.23323 1.02627 0.93771 0.98931 1.22657 1.02795 0.98230 0.78097 1.48543 1.68170 1.06171 1.11726 1.20730 0.75731 0.86617 0.85352 1.90692 1.51747 1.86115 1.18438 1.20220 1.07337 0.86154 0.95743 1.19718 0.88222 0.98837 0.99505 1.27098 1.02420 1.06060 1.04171 1.83498 1.05147 1.37373 1.32834 1.26526 0.96241 0.99638 0.98672 1.20568 0.99878 1.01467 0.91181 1.23276 1.00856 0.94496 0.99848 1.23247 1.04512 1.00356 0.91997 1.65918 1.38494 1.08598 1.08240 1.22309 1.00203 0.81283 0.98706 0.96775 0.95040 0.91322 0.92727 0.90622 0.88660 0.89036 0.86785 0.85513 0.83525 0.78966 0.84723 0.88101 0.84869 0.85860 0.89286 0.93321 0.93960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.43 8.47 127.77 1.08 5.51 16 2 N -0.61 -27.85 2.53 -696.14 -1.76 -29.61 16 3 C -0.27 -14.89 9.88 84.03 0.83 -14.06 16 4 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 5 C -0.03 -1.49 5.31 84.86 0.45 -1.04 16 6 N -0.95 -59.17 13.97 21.65 0.30 -58.87 16 7 Si 0.96 44.83 24.94 68.60 1.71 46.54 16 8 H -0.28 -12.68 6.67 99.48 0.66 -12.02 16 9 H -0.31 -14.84 7.11 99.48 0.71 -14.13 16 10 H -0.24 -10.39 7.11 99.48 0.71 -9.68 16 11 C 0.16 6.01 3.43 46.18 0.16 6.17 16 12 H 0.08 3.02 7.95 -2.39 -0.02 3.00 16 13 C -0.15 -3.86 6.63 32.07 0.21 -3.65 16 14 C 0.10 2.02 6.70 86.93 0.58 2.60 16 15 N -0.61 -17.28 3.32 -811.35 -2.70 -19.98 16 16 C 0.53 15.64 7.84 87.66 0.69 16.33 16 17 O -0.59 -23.59 16.36 -3.02 -0.05 -23.64 16 18 C -0.05 -1.06 5.11 29.10 0.15 -0.91 16 19 C 0.07 1.69 5.23 41.52 0.22 1.91 16 20 C -0.26 -5.49 11.14 66.78 0.74 -4.75 16 21 S 0.16 2.84 21.94 -56.49 -1.24 1.61 16 22 C 0.07 1.46 7.04 88.52 0.62 2.09 16 23 C -0.11 -1.74 6.33 -11.54 -0.07 -1.81 16 24 C -0.15 -1.40 10.02 30.62 0.31 -1.09 16 25 C -0.16 -2.06 10.24 30.62 0.31 -1.75 16 26 N -0.50 -13.39 10.53 -179.41 -1.89 -15.28 16 27 C 0.10 3.61 6.51 86.73 0.56 4.17 16 28 H 0.01 0.59 7.84 -2.39 -0.02 0.57 16 29 H 0.03 1.41 3.05 -2.39 -0.01 1.40 16 30 H 0.07 2.36 6.00 -2.39 -0.01 2.34 16 31 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.08 2.02 6.03 -2.39 -0.01 2.01 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.11 1.35 7.48 -2.39 -0.02 1.33 16 36 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.15 1.78 7.85 -2.39 -0.02 1.76 16 38 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.14 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.10 0.91 7.23 -2.38 -0.02 0.90 16 41 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 44 H 0.05 1.95 6.97 -2.38 -0.02 1.93 16 45 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -79.18 374.32 2.18 -76.99 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.96 Total: 12.52 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 6.85 Total: 9.72 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -6.05 Total: -123.74 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.71 Total: 46.54 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.24 Total: 1.61 kcal Total: -79.18 2.18 -76.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972489450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.019 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds