Wall clock time and date at job start Tue Mar 31 2020 18:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00081 * 2 1 4 4 H 1.08002 * 120.00259 * 201.95523 * 3 2 1 5 5 C 1.38813 * 120.00072 * 21.96096 * 3 2 1 6 6 N 1.31624 * 120.00194 * 16.96736 * 5 3 2 7 7 Si 1.86800 * 120.00083 * 196.97181 * 5 3 2 8 8 H 1.48496 * 109.46948 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47179 * 119.99850 * 7 5 3 10 10 H 1.48505 * 109.46819 * 239.99746 * 7 5 3 11 11 C 1.46499 * 120.00048 * 179.97438 * 2 1 3 12 12 C 1.53040 * 109.45998 * 300.00194 * 11 2 1 13 13 C 1.53189 * 109.31620 * 181.37119 * 12 11 2 14 14 N 1.46923 * 108.77651 * 305.36835 * 13 12 11 15 15 C 1.34774 * 120.63387 * 233.58302 * 14 13 12 16 16 O 1.21682 * 120.00532 * 183.46883 * 15 14 13 17 17 C 1.46689 * 119.99433 * 3.20057 * 15 14 13 18 18 S 1.76208 * 126.13012 * 309.55971 * 17 15 14 19 19 C 1.70954 * 90.31691 * 179.97438 * 18 17 15 20 20 N 1.29428 * 110.38680 * 0.35148 * 19 18 17 21 21 C 1.30944 * 117.36711 * 359.71953 * 20 19 18 22 22 C 1.50701 * 122.90690 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49488 * 8.71069 * 22 21 20 24 24 C 1.53001 * 117.49855 * 300.05311 * 22 21 20 25 25 C 1.46924 * 118.74129 * 53.85201 * 14 13 12 26 26 C 1.53035 * 109.44874 * 60.06301 * 11 2 1 27 27 H 1.08997 * 109.47041 * 272.20983 * 1 2 3 28 28 H 1.09005 * 109.46712 * 32.20810 * 1 2 3 29 29 H 1.08997 * 109.46868 * 152.20269 * 1 2 3 30 30 H 0.96997 * 120.00404 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46416 * 180.02562 * 11 2 1 32 32 H 1.08995 * 109.50049 * 61.41915 * 12 11 2 33 33 H 1.09003 * 109.52738 * 301.33917 * 12 11 2 34 34 H 1.08996 * 109.59197 * 185.57931 * 13 12 11 35 35 H 1.09006 * 109.70041 * 65.22156 * 13 12 11 36 36 H 1.07994 * 124.80604 * 180.02562 * 19 18 17 37 37 H 1.08997 * 115.54947 * 154.37996 * 22 21 20 38 38 H 1.08994 * 117.50454 * 0.02562 * 23 22 21 39 39 H 1.09008 * 117.49859 * 145.01686 * 23 22 21 40 40 H 1.09001 * 117.49712 * 214.97636 * 24 22 21 41 41 H 1.09001 * 117.49760 * 359.97434 * 24 22 21 42 42 H 1.09009 * 109.58327 * 65.92989 * 25 14 13 43 43 H 1.08995 * 109.59328 * 186.35462 * 25 14 13 44 44 H 1.09005 * 109.49907 * 298.57093 * 26 11 2 45 45 H 1.08998 * 109.50035 * 58.67085 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1710 1.2198 -0.3497 5 6 1.5312 2.3444 0.4496 6 7 0.4358 2.2667 1.1751 7 14 2.2535 4.0140 0.0248 8 1 3.4781 3.8295 -0.7946 9 1 1.2575 4.8033 -0.7435 10 1 2.5994 4.7363 1.2754 11 6 2.1975 -1.2687 0.0006 12 6 1.8276 -2.0705 1.2506 13 6 2.6209 -3.3809 1.2652 14 7 2.3844 -4.0910 0.0010 15 6 1.9581 -5.3695 0.0008 16 8 1.8263 -5.9669 -1.0511 17 6 1.6584 -6.0428 1.2691 18 16 2.7096 -6.1135 2.6816 19 6 1.5380 -7.0346 3.5192 20 7 0.5037 -7.2387 2.7683 21 6 0.5252 -6.7285 1.5625 22 6 -0.6108 -6.8889 0.5854 23 6 -1.9097 -7.5064 1.1074 24 6 -0.9976 -8.3124 0.1792 25 6 2.6273 -3.3829 -1.2633 26 6 1.8287 -2.0706 -1.2496 27 1 -0.3633 0.0396 1.0269 28 1 -0.3633 0.8696 -0.5478 29 1 -0.3633 -0.9091 -0.4792 30 1 0.0034 3.0762 1.4890 31 1 3.2691 -1.0694 0.0009 32 1 0.7604 -2.2915 1.2384 33 1 2.0686 -1.4893 2.1407 34 1 2.2895 -3.9994 2.0993 35 1 3.6843 -3.1655 1.3700 36 1 1.6478 -7.3993 4.5297 37 1 -0.6929 -6.1095 -0.1721 38 1 -1.9427 -7.7962 2.1576 39 1 -2.8464 -7.1334 0.6930 40 1 -1.3346 -8.4693 -0.8455 41 1 -0.4301 -9.1329 0.6184 42 1 3.6910 -3.1654 -1.3617 43 1 2.3003 -4.0027 -2.0980 44 1 0.7613 -2.2917 -1.2382 45 1 2.0709 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985695420.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:21 Heat of formation + Delta-G solvation = 69.476013 kcal Electronic energy + Delta-G solvation = -27176.938950 eV Core-core repulsion = 23516.250793 eV Total energy + Delta-G solvation = -3660.688157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.72119 -39.60089 -37.48865 -36.61656 -35.10965 -32.39400 -31.39761 -30.37338 -29.65922 -26.49764 -26.02003 -24.83841 -23.42836 -22.80658 -22.45381 -22.35053 -20.93946 -19.34777 -18.41820 -18.23738 -16.93553 -16.80537 -16.44707 -15.67247 -15.15050 -15.06173 -14.77896 -14.53484 -14.33317 -13.93788 -13.89532 -13.45683 -13.29077 -13.03830 -12.59529 -12.45897 -12.30948 -11.73781 -11.68226 -11.61227 -11.56738 -11.07963 -10.94101 -10.90651 -10.79850 -10.51345 -10.43067 -10.31181 -10.23455 -10.16645 -9.89332 -9.84777 -9.67653 -9.41455 -8.89036 -8.61288 -8.51037 -6.79006 -5.76293 -3.19585 0.15138 0.91414 1.33284 2.30068 2.75317 3.08973 3.35683 3.43738 3.45330 3.77462 3.94665 4.39374 4.46510 4.59321 4.71913 4.89550 4.99002 5.00735 5.21363 5.28978 5.32701 5.37925 5.43147 5.55100 5.57030 5.64314 5.67292 5.84479 5.86592 5.95986 5.98961 6.07880 6.10594 6.20916 6.33568 6.44964 6.55510 6.76015 6.92341 6.94610 7.31748 7.34160 7.42713 7.67075 7.78453 8.06086 8.36612 9.20240 9.84823 10.34228 11.29228 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.003003 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.488569 B = 9322.621826 C = 9468.816295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.901 3.099 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.143 4.143 13 C 0.099 3.901 14 N -0.595 5.595 15 C 0.595 3.405 16 O -0.527 6.527 17 C -0.275 4.275 18 S 0.179 5.821 19 C 0.021 3.979 20 N -0.468 5.468 21 C 0.160 3.840 22 C -0.093 4.093 23 C -0.160 4.160 24 C -0.153 4.153 25 C 0.117 3.883 26 C -0.146 4.146 27 H 0.025 0.975 28 H 0.042 0.958 29 H -0.001 1.001 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.205 0.795 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 -19.536 3.277 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.316 5.316 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.731 3.269 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.184 4.184 13 C -0.025 4.025 14 N -0.328 5.328 15 C 0.380 3.620 16 O -0.405 6.405 17 C -0.399 4.399 18 S 0.435 5.565 19 C -0.275 4.275 20 N -0.181 5.181 21 C 0.023 3.977 22 C -0.113 4.113 23 C -0.198 4.198 24 C -0.191 4.191 25 C -0.006 4.006 26 C -0.186 4.186 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.017 0.983 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.222 0.778 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.804 -19.610 3.328 20.087 hybrid contribution -0.345 1.014 -0.355 1.128 sum 2.459 -18.596 2.973 18.992 Atomic orbital electron populations 1.20715 0.82842 0.95877 0.98772 1.43966 1.01724 1.00182 1.85681 1.19250 0.97900 0.85179 1.36253 0.91361 1.24965 0.98225 0.98371 0.98044 1.70102 1.21266 1.26968 1.36488 0.86246 0.78405 0.84524 0.77725 1.20316 1.21639 1.21822 1.20286 0.96082 0.86054 0.90499 1.22499 0.99870 0.93999 1.01985 1.22141 1.00809 0.94724 0.84822 1.48075 1.64870 1.11181 1.08655 1.16740 0.77344 0.81361 0.86527 1.90816 1.53167 1.65000 1.31487 1.25362 1.00975 1.12799 1.00741 1.84109 1.21267 1.46982 1.04159 1.28677 0.92716 1.01429 1.04640 1.65916 1.26013 1.22064 1.04121 1.19546 0.93938 0.93360 0.90817 1.20507 0.92876 0.98894 0.99046 1.23008 0.93126 1.02986 1.00631 1.22923 1.02812 0.92936 1.00443 1.21820 1.00024 0.93590 0.85121 1.22558 1.00197 0.94585 1.01302 0.95720 0.93884 0.98259 0.93827 0.91796 0.92129 0.90343 0.90623 0.90854 0.77835 0.85970 0.87631 0.88344 0.88119 0.88746 0.91274 0.89326 0.91916 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.07 59.85 0.48 4.41 16 2 N -0.59 -14.25 2.81 -173.44 -0.49 -14.73 16 3 C -0.26 -6.81 9.57 -15.06 -0.14 -6.96 16 4 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 5 C 0.00 0.07 4.99 -17.43 -0.09 -0.02 16 6 N -0.90 -25.89 10.91 55.49 0.61 -25.29 16 7 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.18 3.42 2.55 -67.89 -0.17 3.24 16 12 C -0.14 -2.44 5.34 -26.61 -0.14 -2.58 16 13 C 0.10 1.34 5.97 -3.71 -0.02 1.32 16 14 N -0.60 -8.66 2.97 -174.04 -0.52 -9.17 16 15 C 0.60 9.14 7.00 -12.85 -0.09 9.05 16 16 O -0.53 -9.36 16.02 5.20 0.08 -9.28 16 17 C -0.27 -3.70 5.29 -37.09 -0.20 -3.90 16 18 S 0.18 1.74 20.54 -107.50 -2.21 -0.47 16 19 C 0.02 0.19 12.22 51.75 0.63 0.82 16 20 N -0.47 -5.63 9.80 -11.53 -0.11 -5.75 16 21 C 0.16 2.14 6.42 -83.89 -0.54 1.60 16 22 C -0.09 -1.19 5.52 -91.77 -0.51 -1.69 16 23 C -0.16 -1.69 10.09 -26.70 -0.27 -1.96 16 24 C -0.15 -1.65 10.24 -26.69 -0.27 -1.93 16 25 C 0.12 1.68 6.45 -3.48 -0.02 1.66 16 26 C -0.15 -2.44 5.33 -26.39 -0.14 -2.58 16 27 H 0.02 0.64 7.53 -51.93 -0.39 0.25 16 28 H 0.04 1.13 7.18 -51.93 -0.37 0.75 16 29 H 0.00 -0.02 6.46 -51.93 -0.34 -0.36 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.06 1.22 7.86 -51.93 -0.41 0.81 16 32 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 33 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.08 0.94 4.38 -39.22 -0.17 0.77 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.69 7.73 -51.93 -0.40 1.29 16 38 H 0.11 1.14 7.74 -51.93 -0.40 0.74 16 39 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 43 H 0.09 1.30 7.02 -51.93 -0.36 0.93 16 44 H 0.06 1.12 6.72 -51.93 -0.35 0.77 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -31.55 370.53 -10.10 -41.64 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.53 Total: 0.56 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.49 Total: 0.49 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.51 Total: -54.94 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.08 Total: -9.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.21 Total: -0.47 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.55 -10.10 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985695420.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.120 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds