Wall clock time and date at job start Tue Mar 31 2020 18:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00301 * 2 1 4 4 H 1.08003 * 120.00404 * 204.37688 * 3 2 1 5 5 C 1.38813 * 119.99794 * 24.36781 * 3 2 1 6 6 N 1.31622 * 119.99844 * 14.21062 * 5 3 2 7 7 Si 1.86802 * 120.00001 * 194.20687 * 5 3 2 8 8 H 1.48504 * 109.47051 * 60.00665 * 7 5 3 9 9 H 1.48502 * 109.46727 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47070 * 300.00418 * 7 5 3 11 11 C 1.46505 * 119.99953 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.46048 * 299.99511 * 11 2 1 13 13 C 1.53189 * 109.31114 * 181.37037 * 12 11 2 14 14 N 1.46921 * 108.78000 * 305.36847 * 13 12 11 15 15 C 1.34777 * 120.63024 * 233.58878 * 14 13 12 16 16 O 1.21682 * 120.00435 * 6.29118 * 15 14 13 17 17 C 1.46687 * 119.99635 * 186.29110 * 15 14 13 18 18 C 1.35660 * 126.13106 * 35.70526 * 17 15 14 19 19 N 1.30944 * 114.18863 * 179.97438 * 18 17 15 20 20 C 1.29424 * 117.36588 * 359.97438 * 19 18 17 21 21 C 1.50704 * 124.80439 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49744 * 8.60151 * 21 20 19 23 23 C 1.52994 * 117.50000 * 299.97957 * 21 20 19 24 24 S 1.70949 * 110.39431 * 0.02562 * 20 19 18 25 25 C 1.46922 * 118.73743 * 53.85848 * 14 13 12 26 26 C 1.53037 * 109.44980 * 60.06105 * 11 2 1 27 27 H 1.08999 * 109.46659 * 272.02759 * 1 2 3 28 28 H 1.08992 * 109.47504 * 32.02811 * 1 2 3 29 29 H 1.09002 * 109.46942 * 152.03280 * 1 2 3 30 30 H 0.96997 * 119.99950 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.45697 * 180.02562 * 11 2 1 32 32 H 1.09006 * 109.49369 * 61.42056 * 12 11 2 33 33 H 1.09002 * 109.49767 * 301.32632 * 12 11 2 34 34 H 1.09008 * 109.58510 * 185.58056 * 13 12 11 35 35 H 1.08999 * 109.70083 * 65.22791 * 13 12 11 36 36 H 1.07999 * 122.90353 * 0.02562 * 18 17 15 37 37 H 1.09002 * 115.54963 * 154.30713 * 21 20 19 38 38 H 1.09000 * 117.49927 * 359.97438 * 22 21 20 39 39 H 1.09001 * 117.49396 * 145.02168 * 22 21 20 40 40 H 1.09000 * 117.50168 * 214.97947 * 23 21 20 41 41 H 1.09002 * 117.49665 * 359.97285 * 23 21 20 42 42 H 1.09001 * 109.58621 * 65.92724 * 25 14 13 43 43 H 1.09002 * 109.58992 * 186.35313 * 25 14 13 44 44 H 1.08996 * 109.49546 * 298.57149 * 26 11 2 45 45 H 1.09000 * 109.49804 * 58.67102 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1575 1.2276 -0.3860 5 6 1.5484 2.3345 0.4960 6 7 0.4490 2.2442 1.2140 7 14 2.2997 4.0083 0.1446 8 1 2.3451 4.2323 -1.3228 9 1 1.4736 5.0651 0.7818 10 1 3.6777 4.0580 0.6958 11 6 2.1975 -1.2688 -0.0006 12 6 1.8277 -2.0716 1.2488 13 6 2.6210 -3.3820 1.2622 14 7 2.3844 -4.0911 -0.0027 15 6 1.9580 -5.3696 -0.0038 16 8 1.6557 -5.9111 1.0431 17 6 1.8583 -6.1083 -1.2672 18 6 2.6970 -5.9964 -2.3275 19 7 2.3893 -6.7692 -3.3389 20 6 1.3495 -7.5294 -3.2120 21 6 0.8460 -8.4812 -4.2663 22 6 1.7281 -8.7036 -5.4965 23 6 0.4390 -7.8884 -5.6168 24 16 0.6281 -7.3010 -1.6791 25 6 2.6273 -3.3818 -1.2662 26 6 1.8286 -2.0696 -1.2514 27 1 -0.3632 0.0364 1.0270 28 1 -0.3634 0.8712 -0.5450 29 1 -0.3633 -0.9077 -0.4820 30 1 0.0290 3.0467 1.5609 31 1 3.2691 -1.0693 0.0000 32 1 0.7603 -2.2926 1.2365 33 1 2.0692 -1.4909 2.1391 34 1 2.2896 -4.0013 2.0958 35 1 3.6844 -3.1667 1.3670 36 1 3.5455 -5.3283 -2.3365 37 1 0.2732 -9.3318 -3.8969 38 1 2.6725 -8.1612 -5.5434 39 1 1.7358 -9.7008 -5.9365 40 1 -0.4013 -8.3492 -6.1360 41 1 0.5350 -6.8099 -5.7425 42 1 3.6909 -3.1643 -1.3646 43 1 2.3001 -4.0009 -2.1016 44 1 0.7613 -2.2906 -1.2402 45 1 2.0708 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985762005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:25 Heat of formation + Delta-G solvation = 69.820694 kcal Electronic energy + Delta-G solvation = -26543.495743 eV Core-core repulsion = 22882.822533 eV Total energy + Delta-G solvation = -3660.673211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.67961 -39.58103 -37.54124 -37.18972 -35.10418 -32.44186 -31.43515 -30.16657 -29.51270 -26.91491 -26.00387 -24.96270 -23.22390 -22.97155 -22.73873 -22.19608 -20.88794 -19.52973 -18.78856 -18.11637 -16.93934 -16.76259 -16.17850 -15.97504 -15.21923 -15.07892 -14.80400 -14.66151 -14.36563 -13.97102 -13.75812 -13.45760 -13.32947 -13.04959 -12.64665 -12.35051 -12.27951 -11.92777 -11.84968 -11.64253 -11.46962 -11.23144 -11.04671 -10.97541 -10.89452 -10.77466 -10.44656 -10.33385 -10.25669 -10.12307 -9.87694 -9.78168 -9.63197 -9.60737 -8.98443 -8.61151 -8.49368 -6.74497 -5.74336 -3.20823 0.06293 0.86114 1.40854 2.23412 2.93715 3.08650 3.37306 3.42404 3.43246 3.43759 3.71012 4.33994 4.40747 4.44013 4.48376 4.56384 4.89994 4.96130 5.02597 5.21475 5.26031 5.33391 5.37842 5.38160 5.46460 5.56205 5.59517 5.71613 5.77287 5.82217 5.84940 5.98955 6.12076 6.21934 6.33508 6.50454 6.56527 6.77451 6.95219 6.98789 7.34067 7.34891 7.37711 7.70204 7.78643 8.06320 8.39707 9.22113 9.85814 10.36381 11.30897 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002606 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.547875 B =10742.294953 C =11436.365648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.903 3.097 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.179 3.821 12 C -0.144 4.144 13 C 0.115 3.885 14 N -0.591 5.591 15 C 0.592 3.408 16 O -0.540 6.540 17 C -0.287 4.287 18 C 0.088 3.912 19 N -0.477 5.477 20 C 0.068 3.932 21 C -0.102 4.102 22 C -0.148 4.148 23 C -0.153 4.153 24 S 0.225 5.775 25 C 0.097 3.903 26 C -0.146 4.146 27 H 0.026 0.974 28 H 0.042 0.958 29 H -0.002 1.002 30 H 0.253 0.747 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.186 0.814 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -21.684 -11.184 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.387 4.387 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.549 5.549 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.323 5.323 15 C 0.378 3.622 16 O -0.418 6.418 17 C -0.411 4.411 18 C -0.069 4.069 19 N -0.191 5.191 20 C -0.205 4.205 21 C -0.124 4.124 22 C -0.187 4.187 23 C -0.193 4.193 24 S 0.485 5.515 25 C -0.026 4.026 26 C -0.186 4.186 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.203 0.797 37 H 0.147 0.853 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.697 -22.247 -10.477 24.601 hybrid contribution 1.073 1.712 -0.043 2.021 sum 1.770 -20.535 -10.519 23.141 Atomic orbital electron populations 1.20717 0.82924 0.95741 0.98823 1.43924 1.01672 1.00160 1.85789 1.19147 0.99218 0.85708 1.34665 0.91566 1.25044 0.98176 0.98572 0.97742 1.70059 1.21148 1.27562 1.36132 0.86360 0.78417 0.83962 0.77919 1.21102 1.21684 1.20931 1.20297 0.96065 0.86097 0.90488 1.22510 1.00023 0.94215 1.01708 1.21790 1.00060 0.93884 0.84965 1.47963 1.64997 1.10675 1.08672 1.16752 0.77606 0.81463 0.86367 1.90823 1.50055 1.68492 1.32463 1.25735 1.04859 1.08432 1.02103 1.22273 1.00308 0.97880 0.86430 1.66035 1.15565 1.07596 1.29901 1.26450 0.95485 0.99955 0.98645 1.20549 1.06027 0.98919 0.86907 1.23025 0.96134 1.01853 0.97661 1.23075 0.99199 1.00958 0.96025 1.84013 1.26058 1.32534 1.08883 1.22286 1.00556 0.94524 0.85245 1.22547 1.00072 0.94477 1.01532 0.95598 0.93971 0.98383 0.93690 0.91813 0.92169 0.90359 0.89410 0.91281 0.79747 0.85339 0.87240 0.87988 0.87702 0.88067 0.90897 0.89771 0.91933 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.06 59.85 0.48 4.44 16 2 N -0.59 -14.38 2.80 -173.43 -0.49 -14.87 16 3 C -0.26 -6.90 9.55 -15.06 -0.14 -7.04 16 4 H 0.07 1.72 7.84 -52.48 -0.41 1.31 16 5 C 0.00 0.09 5.05 -17.43 -0.09 0.01 16 6 N -0.90 -26.18 10.89 55.49 0.60 -25.58 16 7 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C 0.18 3.44 2.55 -67.89 -0.17 3.27 16 12 C -0.14 -2.60 5.34 -26.61 -0.14 -2.74 16 13 C 0.12 1.74 6.44 -3.71 -0.02 1.72 16 14 N -0.59 -8.56 2.97 -174.05 -0.52 -9.08 16 15 C 0.59 9.13 7.60 -12.85 -0.10 9.03 16 16 O -0.54 -9.94 16.53 5.20 0.09 -9.85 16 17 C -0.29 -3.71 5.75 -37.09 -0.21 -3.93 16 18 C 0.09 1.01 9.00 -18.85 -0.17 0.84 16 19 N -0.48 -5.43 9.98 -11.50 -0.11 -5.54 16 20 C 0.07 0.69 6.96 -13.29 -0.09 0.60 16 21 C -0.10 -0.74 6.28 -91.77 -0.58 -1.32 16 22 C -0.15 -0.94 10.12 -26.73 -0.27 -1.21 16 23 C -0.15 -0.96 10.23 -26.74 -0.27 -1.24 16 24 S 0.23 2.47 23.17 -107.50 -2.49 -0.02 16 25 C 0.10 1.24 5.22 -3.49 -0.02 1.22 16 26 C -0.15 -2.35 5.33 -26.39 -0.14 -2.49 16 27 H 0.03 0.69 7.49 -51.93 -0.39 0.30 16 28 H 0.04 1.11 7.26 -51.93 -0.38 0.73 16 29 H 0.00 -0.05 6.46 -51.93 -0.34 -0.38 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.22 7.87 -51.93 -0.41 0.82 16 32 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.38 7.00 -51.92 -0.36 1.02 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.19 1.77 6.68 -52.49 -0.35 1.42 16 37 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.11 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.08 0.97 4.57 -51.93 -0.24 0.73 16 44 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 45 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 371.61 15.07 5.60 5.60 Total: -1.00 -31.86 371.61 -10.83 -42.69 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.55 Total: -1.06 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.94 Total: 1.17 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.51 Total: -55.06 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.49 Total: -0.02 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.86 -10.83 -42.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985762005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.511 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds