Wall clock time and date at job start Tue Mar 31 2020 18:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00301 * 2 1 4 4 H 1.08003 * 120.00404 * 204.37688 * 3 2 1 5 5 C 1.38813 * 119.99794 * 24.36781 * 3 2 1 6 6 N 1.31622 * 119.99844 * 14.21062 * 5 3 2 7 7 Si 1.86802 * 120.00001 * 194.20687 * 5 3 2 8 8 H 1.48504 * 109.47051 * 60.00665 * 7 5 3 9 9 H 1.48502 * 109.46727 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47070 * 300.00418 * 7 5 3 11 11 C 1.46505 * 119.99953 * 180.02562 * 2 1 3 12 12 C 1.53043 * 109.46048 * 299.99511 * 11 2 1 13 13 C 1.53189 * 109.31114 * 181.37037 * 12 11 2 14 14 N 1.46921 * 108.78000 * 305.36847 * 13 12 11 15 15 C 1.34777 * 120.63024 * 233.58878 * 14 13 12 16 16 O 1.21682 * 120.00435 * 6.29118 * 15 14 13 17 17 C 1.46687 * 119.99635 * 186.29110 * 15 14 13 18 18 C 1.35660 * 126.13106 * 35.70526 * 17 15 14 19 19 N 1.30944 * 114.18863 * 179.97438 * 18 17 15 20 20 C 1.29424 * 117.36588 * 359.97438 * 19 18 17 21 21 C 1.50704 * 124.80439 * 180.02562 * 20 19 18 22 22 C 1.53003 * 117.49744 * 8.60151 * 21 20 19 23 23 C 1.52994 * 117.50000 * 299.97957 * 21 20 19 24 24 S 1.70949 * 110.39431 * 0.02562 * 20 19 18 25 25 C 1.46922 * 118.73743 * 53.85848 * 14 13 12 26 26 C 1.53037 * 109.44980 * 60.06105 * 11 2 1 27 27 H 1.08999 * 109.46659 * 272.02759 * 1 2 3 28 28 H 1.08992 * 109.47504 * 32.02811 * 1 2 3 29 29 H 1.09002 * 109.46942 * 152.03280 * 1 2 3 30 30 H 0.96997 * 119.99950 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.45697 * 180.02562 * 11 2 1 32 32 H 1.09006 * 109.49369 * 61.42056 * 12 11 2 33 33 H 1.09002 * 109.49767 * 301.32632 * 12 11 2 34 34 H 1.09008 * 109.58510 * 185.58056 * 13 12 11 35 35 H 1.08999 * 109.70083 * 65.22791 * 13 12 11 36 36 H 1.07999 * 122.90353 * 0.02562 * 18 17 15 37 37 H 1.09002 * 115.54963 * 154.30713 * 21 20 19 38 38 H 1.09000 * 117.49927 * 359.97438 * 22 21 20 39 39 H 1.09001 * 117.49396 * 145.02168 * 22 21 20 40 40 H 1.09000 * 117.50168 * 214.97947 * 23 21 20 41 41 H 1.09002 * 117.49665 * 359.97285 * 23 21 20 42 42 H 1.09001 * 109.58621 * 65.92724 * 25 14 13 43 43 H 1.09002 * 109.58992 * 186.35313 * 25 14 13 44 44 H 1.08996 * 109.49546 * 298.57149 * 26 11 2 45 45 H 1.09000 * 109.49804 * 58.67102 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1575 1.2276 -0.3860 5 6 1.5484 2.3345 0.4960 6 7 0.4490 2.2442 1.2140 7 14 2.2997 4.0083 0.1446 8 1 2.3451 4.2323 -1.3228 9 1 1.4736 5.0651 0.7818 10 1 3.6777 4.0580 0.6958 11 6 2.1975 -1.2688 -0.0006 12 6 1.8277 -2.0716 1.2488 13 6 2.6210 -3.3820 1.2622 14 7 2.3844 -4.0911 -0.0027 15 6 1.9580 -5.3696 -0.0038 16 8 1.6557 -5.9111 1.0431 17 6 1.8583 -6.1083 -1.2672 18 6 2.6970 -5.9964 -2.3275 19 7 2.3893 -6.7692 -3.3389 20 6 1.3495 -7.5294 -3.2120 21 6 0.8460 -8.4812 -4.2663 22 6 1.7281 -8.7036 -5.4965 23 6 0.4390 -7.8884 -5.6168 24 16 0.6281 -7.3010 -1.6791 25 6 2.6273 -3.3818 -1.2662 26 6 1.8286 -2.0696 -1.2514 27 1 -0.3632 0.0364 1.0270 28 1 -0.3634 0.8712 -0.5450 29 1 -0.3633 -0.9077 -0.4820 30 1 0.0290 3.0467 1.5609 31 1 3.2691 -1.0693 0.0000 32 1 0.7603 -2.2926 1.2365 33 1 2.0692 -1.4909 2.1391 34 1 2.2896 -4.0013 2.0958 35 1 3.6844 -3.1667 1.3670 36 1 3.5455 -5.3283 -2.3365 37 1 0.2732 -9.3318 -3.8969 38 1 2.6725 -8.1612 -5.5434 39 1 1.7358 -9.7008 -5.9365 40 1 -0.4013 -8.3492 -6.1360 41 1 0.5350 -6.8099 -5.7425 42 1 3.6909 -3.1643 -1.3646 43 1 2.3001 -4.0009 -2.1016 44 1 0.7613 -2.2906 -1.2402 45 1 2.0708 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985762005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:24 Heat of formation + Delta-G solvation = 51.372897 kcal Electronic energy + Delta-G solvation = -26544.295700 eV Core-core repulsion = 22882.822533 eV Total energy + Delta-G solvation = -3661.473167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71491 -40.58509 -38.97548 -37.80647 -36.74604 -34.07608 -32.74523 -31.60863 -30.83823 -28.03998 -27.80628 -26.35748 -24.39650 -24.24155 -23.40705 -23.22421 -22.11660 -20.73931 -19.86159 -19.11048 -18.73397 -17.95686 -17.19138 -16.96659 -16.87138 -16.25949 -15.83828 -15.62865 -15.43763 -15.24635 -15.15940 -14.99484 -14.65365 -14.52851 -13.98432 -13.76983 -13.27888 -13.19496 -13.06497 -12.82907 -12.68641 -12.54790 -12.37950 -12.34763 -12.28641 -12.10923 -11.86423 -11.81478 -11.71827 -11.59997 -11.33495 -11.18494 -10.67761 -10.60027 -10.53605 -9.87941 -9.71115 -8.75056 -7.82011 -5.30603 -0.81152 0.00060 0.56294 1.32529 1.47609 1.49772 1.56159 1.84106 1.97741 2.51708 2.84320 3.03584 3.31657 3.39837 3.60683 3.72789 3.83461 3.89953 4.01607 4.07157 4.12184 4.15458 4.26251 4.30814 4.35132 4.51522 4.66066 4.72934 4.79050 4.83194 4.88256 4.88562 4.95343 4.97822 5.06021 5.16967 5.20017 5.31101 5.32174 5.45879 5.54394 5.66162 5.67777 6.20304 6.35144 6.50741 6.89660 7.15798 7.88429 8.34636 9.21752 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002606 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.547875 B =10742.294953 C =11436.365648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.609 5.609 3 C -0.261 4.261 4 H 0.075 0.925 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.968 3.032 8 H -0.278 1.278 9 H -0.299 1.299 10 H -0.274 1.274 11 C 0.174 3.826 12 C -0.132 4.132 13 C 0.125 3.875 14 N -0.591 5.591 15 C 0.594 3.406 16 O -0.578 6.578 17 C -0.320 4.320 18 C 0.104 3.896 19 N -0.494 5.494 20 C 0.084 3.916 21 C -0.118 4.118 22 C -0.142 4.142 23 C -0.146 4.146 24 S 0.224 5.776 25 C 0.105 3.895 26 C -0.135 4.135 27 H -0.005 1.005 28 H 0.015 0.985 29 H 0.023 0.977 30 H 0.247 0.753 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.204 0.796 37 H 0.151 0.849 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.047 0.953 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -23.351 -13.640 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.331 5.331 3 C -0.391 4.391 4 H 0.093 0.907 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.204 1.204 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.067 3.933 12 C -0.172 4.172 13 C 0.002 3.998 14 N -0.322 5.322 15 C 0.381 3.619 16 O -0.460 6.460 17 C -0.445 4.445 18 C -0.054 4.054 19 N -0.208 5.208 20 C -0.190 4.190 21 C -0.140 4.140 22 C -0.181 4.181 23 C -0.185 4.185 24 S 0.485 5.515 25 C -0.017 4.017 26 C -0.175 4.175 27 H 0.014 0.986 28 H 0.034 0.966 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.221 0.779 37 H 0.169 0.831 38 H 0.113 0.887 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.142 -23.942 -12.958 27.308 hybrid contribution 0.627 2.123 0.636 2.303 sum 2.769 -21.819 -12.322 25.211 Atomic orbital electron populations 1.20385 0.83591 0.95638 0.96784 1.44164 1.01624 1.01458 1.85869 1.19544 0.99471 0.86755 1.33364 0.90719 1.25826 0.98930 1.02039 0.98181 1.70235 1.22785 1.27834 1.37783 0.85335 0.77705 0.79578 0.77778 1.20399 1.22557 1.19944 1.20538 0.95809 0.84638 0.92310 1.22293 0.99188 0.95468 1.00293 1.21623 1.00725 0.91959 0.85447 1.47998 1.64717 1.10655 1.08872 1.17025 0.76569 0.81520 0.86735 1.90797 1.51774 1.69377 1.34055 1.25507 1.06978 1.10191 1.01789 1.22566 0.99941 0.97264 0.85613 1.66147 1.16322 1.08444 1.29917 1.27028 0.94373 0.99016 0.98543 1.20871 1.07144 0.99267 0.86700 1.23093 0.95415 1.02902 0.96713 1.23151 1.00042 1.00396 0.94947 1.84009 1.25824 1.32157 1.09506 1.22364 1.01677 0.92641 0.84983 1.22364 0.99711 0.95730 0.99675 0.98632 0.96601 0.95824 0.94438 0.91258 0.94247 0.92447 0.90190 0.88877 0.77939 0.83145 0.88736 0.85678 0.85369 0.89427 0.87972 0.87975 0.93433 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 8.06 127.77 1.03 10.12 16 2 N -0.61 -29.70 2.80 -702.63 -1.97 -31.67 16 3 C -0.26 -13.96 9.55 84.03 0.80 -13.16 16 4 H 0.08 3.80 7.84 -2.91 -0.02 3.78 16 5 C -0.05 -3.04 5.05 84.86 0.43 -2.61 16 6 N -0.94 -56.05 10.89 21.65 0.24 -55.81 16 7 Si 0.97 44.64 29.58 68.60 2.03 46.67 16 8 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 9 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 C 0.17 6.55 2.55 45.02 0.11 6.67 16 12 C -0.13 -4.80 5.34 30.67 0.16 -4.64 16 13 C 0.13 3.68 6.44 86.36 0.56 4.23 16 14 N -0.59 -16.23 2.97 -822.78 -2.44 -18.67 16 15 C 0.59 17.80 7.60 86.45 0.66 18.46 16 16 O -0.58 -21.40 16.53 -4.29 -0.07 -21.47 16 17 C -0.32 -7.85 5.75 23.88 0.14 -7.72 16 18 C 0.10 2.14 9.00 84.23 0.76 2.90 16 19 N -0.49 -10.14 9.98 -190.30 -1.90 -12.04 16 20 C 0.08 1.52 6.96 88.46 0.62 2.14 16 21 C -0.12 -1.39 6.28 -11.54 -0.07 -1.46 16 22 C -0.14 -1.40 10.12 30.59 0.31 -1.09 16 23 C -0.15 -1.41 10.23 30.59 0.31 -1.10 16 24 S 0.22 4.65 23.17 -56.49 -1.31 3.34 16 25 C 0.11 2.41 5.22 86.51 0.45 2.86 16 26 C -0.13 -4.11 5.33 30.82 0.16 -3.95 16 27 H 0.00 -0.26 7.49 -2.39 -0.02 -0.28 16 28 H 0.02 0.84 7.26 -2.39 -0.02 0.82 16 29 H 0.02 1.03 6.46 -2.39 -0.02 1.02 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.07 2.54 7.87 -2.38 -0.02 2.52 16 32 H 0.04 1.57 7.72 -2.38 -0.02 1.55 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.52 7.00 -2.38 -0.02 2.50 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.20 3.21 6.68 -2.91 -0.02 3.19 16 37 H 0.15 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 39 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.10 2.04 4.57 -2.39 -0.01 2.03 16 44 H 0.05 1.59 6.72 -2.39 -0.02 1.58 16 45 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -70.66 371.61 2.01 -68.65 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.00 Total: 9.35 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 6.43 Total: 11.65 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -6.07 Total: -118.19 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.07 Total: -21.47 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.31 Total: 3.34 kcal Total: -70.66 2.01 -68.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985762005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.021 kcal (2) G-P(sol) polarization free energy of solvation -70.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds