Wall clock time and date at job start Tue Mar 31 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00128 * 2 1 4 4 O 1.21626 * 120.00171 * 185.08784 * 3 2 1 5 5 C 1.47274 * 119.99682 * 5.08598 * 3 2 1 6 6 N 1.33550 * 123.14346 * 6.20191 * 5 3 2 7 7 C 1.28646 * 115.76701 * 180.02562 * 6 5 3 8 8 S 1.70764 * 110.55923 * 0.02562 * 7 6 5 9 9 C 1.35206 * 123.13893 * 185.91088 * 5 3 2 10 10 C 1.50705 * 125.58425 * 0.02562 * 9 5 3 11 11 C 1.53004 * 117.49590 * 188.74618 * 10 9 5 12 12 C 1.53001 * 117.50190 * 120.08876 * 10 9 5 13 13 C 1.46502 * 119.99901 * 179.97438 * 2 1 3 14 14 C 1.53071 * 109.43923 * 299.79472 * 13 2 1 15 15 C 1.53193 * 109.29565 * 181.23632 * 14 13 2 16 16 N 1.46924 * 108.89187 * 305.58337 * 15 14 13 17 17 C 1.36943 * 120.63080 * 233.51191 * 16 15 14 18 18 H 1.07997 * 120.00198 * 156.30979 * 17 16 15 19 19 C 1.38810 * 119.99644 * 336.31233 * 17 16 15 20 20 N 1.31617 * 120.00207 * 163.22160 * 19 17 16 21 21 Si 1.86807 * 120.00293 * 343.21693 * 19 17 16 22 22 H 1.48499 * 109.47157 * 90.90219 * 21 19 17 23 23 H 1.48494 * 109.47314 * 210.90145 * 21 19 17 24 24 H 1.48495 * 109.46871 * 330.90317 * 21 19 17 25 25 C 1.46921 * 118.73990 * 53.53502 * 16 15 14 26 26 C 1.53034 * 109.46102 * 60.00062 * 13 2 1 27 27 H 1.08995 * 109.47432 * 275.62318 * 1 2 3 28 28 H 1.09001 * 109.46963 * 35.62904 * 1 2 3 29 29 H 1.09005 * 109.47027 * 155.62217 * 1 2 3 30 30 H 1.08009 * 124.71973 * 180.02562 * 7 6 5 31 31 H 1.09000 * 115.55104 * 334.40489 * 10 9 5 32 32 H 1.08998 * 117.50049 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49954 * 145.01302 * 11 10 9 34 34 H 1.08998 * 117.49672 * 214.97803 * 12 10 9 35 35 H 1.08997 * 117.49658 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.45905 * 179.97438 * 13 2 1 37 37 H 1.09006 * 109.39133 * 61.36560 * 14 13 2 38 38 H 1.08999 * 109.62608 * 301.25581 * 14 13 2 39 39 H 1.09002 * 109.59143 * 185.71996 * 15 14 13 40 40 H 1.09007 * 109.58781 * 65.43911 * 15 14 13 41 41 H 0.97002 * 120.00489 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.58964 * 66.18184 * 25 16 15 43 43 H 1.09008 * 109.58822 * 186.45800 * 25 16 15 44 44 H 1.09004 * 109.49664 * 58.67856 * 26 13 2 45 45 H 1.08998 * 109.50073 * 298.58153 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1693 -0.0934 5 6 1.4069 2.4401 0.1131 6 7 0.0924 2.5088 0.3387 7 6 -0.4014 3.6946 0.4111 8 16 0.8197 4.8673 0.1876 9 6 2.0038 3.6483 0.0038 10 6 3.4718 3.8819 -0.2447 11 6 3.9874 5.3180 -0.1327 12 6 3.8605 4.6549 -1.5065 13 6 2.1975 -1.2688 0.0006 14 6 1.8311 -2.0680 1.2536 15 6 2.6219 -3.3800 1.2664 16 7 2.3844 -4.0910 0.0028 17 6 1.9511 -5.3901 0.0040 18 1 1.4233 -5.7840 -0.8519 19 6 2.1903 -6.2004 1.1053 20 7 1.5107 -7.3168 1.2610 21 14 3.4768 -5.7067 2.3666 22 1 2.8372 -4.8988 3.4359 23 1 4.0804 -6.9260 2.9614 24 1 4.5355 -4.9026 1.7049 25 6 2.6210 -3.3820 -1.2620 26 6 1.8276 -2.0716 -1.2487 27 1 -0.3634 0.1007 1.0227 28 1 -0.3633 0.8353 -0.5987 29 1 -0.3633 -0.9361 -0.4242 30 1 -1.4432 3.9174 0.5886 31 1 4.1368 3.0817 0.0802 32 1 3.2649 6.0939 0.1202 33 1 4.9917 5.4626 0.2655 34 1 4.7814 4.3635 -2.0116 35 1 3.0545 4.9942 -2.1572 36 1 3.2691 -1.0694 0.0000 37 1 0.7633 -2.2870 1.2437 38 1 2.0756 -1.4871 2.1429 39 1 2.2912 -3.9979 2.1012 40 1 3.6854 -3.1646 1.3702 41 1 1.6780 -7.8833 2.0304 42 1 3.6841 -3.1645 -1.3657 43 1 2.2920 -4.0023 -2.0958 44 1 2.0692 -1.4909 -2.1390 45 1 0.7604 -2.2926 -1.2364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005982874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:54 Heat of formation + Delta-G solvation = 83.606051 kcal Electronic energy + Delta-G solvation = -27163.371895 eV Core-core repulsion = 23503.296462 eV Total energy + Delta-G solvation = -3660.075433 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92818 -39.09579 -37.69601 -37.40073 -35.21779 -32.43995 -30.86770 -30.46109 -30.26602 -26.81028 -26.63229 -24.83952 -23.09011 -22.83499 -22.63537 -22.32058 -21.30508 -19.33044 -18.98135 -18.34930 -16.92326 -16.63436 -16.29730 -15.76171 -15.74203 -15.15847 -14.80539 -14.47024 -14.26893 -14.19005 -13.80169 -13.63699 -13.08335 -12.96609 -12.81085 -12.53691 -12.36244 -12.20740 -12.08449 -11.96518 -11.87610 -11.77195 -11.36419 -10.96568 -10.92312 -10.78997 -10.49106 -10.13233 -10.04116 -9.94245 -9.77334 -9.63993 -9.54771 -9.34414 -9.14589 -8.68118 -8.35220 -7.01390 -5.90274 -3.26779 0.20029 0.86982 1.29471 1.80141 3.11390 3.24015 3.32289 3.50525 3.52401 3.57080 3.85120 4.14651 4.44745 4.53868 4.62395 4.67724 4.88957 4.96245 5.16670 5.22700 5.24809 5.32259 5.41050 5.45558 5.46492 5.54173 5.70649 5.71668 5.80932 5.84945 5.94953 6.05393 6.08593 6.13817 6.22259 6.35695 6.43405 6.56520 6.61744 6.68788 6.78265 6.92444 7.13164 7.52612 7.94287 8.20344 8.34142 8.94547 9.74065 10.09609 11.25780 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.002871 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.793307 B = 9749.830209 C =10161.821030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.590 5.590 3 C 0.590 3.410 4 O -0.537 6.537 5 C 0.004 3.996 6 N -0.427 5.427 7 C -0.012 4.012 8 S 0.193 5.807 9 C -0.148 4.148 10 C -0.089 4.089 11 C -0.177 4.177 12 C -0.160 4.160 13 C 0.145 3.855 14 C -0.139 4.139 15 C 0.123 3.877 16 N -0.608 5.608 17 C -0.256 4.256 18 H 0.089 0.911 19 C 0.017 3.983 20 N -0.915 5.915 21 Si 0.891 3.109 22 H -0.290 1.290 23 H -0.306 1.306 24 H -0.269 1.269 25 C 0.153 3.847 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.026 0.974 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 29.262 -3.372 29.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.320 5.320 3 C 0.375 3.625 4 O -0.415 6.415 5 C -0.130 4.130 6 N -0.141 5.141 7 C -0.311 4.311 8 S 0.449 5.551 9 C -0.272 4.272 10 C -0.109 4.109 11 C -0.215 4.215 12 C -0.198 4.198 13 C 0.043 3.957 14 C -0.179 4.179 15 C -0.003 4.003 16 N -0.331 5.331 17 C -0.384 4.384 18 H 0.107 0.893 19 C -0.181 4.181 20 N -0.559 5.559 21 Si 0.724 3.276 22 H -0.219 1.219 23 H -0.235 1.235 24 H -0.194 1.194 25 C 0.027 3.973 26 C -0.180 4.180 27 H 0.075 0.925 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.221 0.779 31 H 0.169 0.831 32 H 0.113 0.887 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.052 29.644 -3.284 29.896 hybrid contribution 0.681 -0.648 0.886 1.292 sum -1.371 28.995 -2.397 29.127 Atomic orbital electron populations 1.21981 0.78611 1.02619 1.02421 1.47923 1.07823 1.05433 1.70814 1.17078 0.86198 0.82129 0.77058 1.90715 1.12998 1.86352 1.51436 1.20381 0.89057 0.94721 1.08872 1.67375 1.09847 1.23675 1.13214 1.28476 1.05412 0.90977 1.06212 1.82760 0.97694 1.11278 1.63359 1.24813 1.00933 0.96133 1.05330 1.20775 0.89327 0.97067 1.03765 1.23165 1.03218 0.94240 1.00837 1.23089 1.03712 1.02501 0.90511 1.21188 0.97330 0.81052 0.96092 1.22380 1.02050 0.97363 0.96078 1.21440 0.96625 0.91718 0.90536 1.44404 1.78434 1.10908 0.99398 1.18979 1.29751 0.85125 1.04539 0.89327 1.25199 0.98945 0.95686 0.98270 1.69784 1.41264 1.14607 1.30206 0.86929 0.83437 0.75921 0.81360 1.21875 1.23479 1.19447 1.20861 0.96098 0.90987 0.89373 1.22377 1.01847 0.97701 0.96074 0.92547 0.89850 0.91335 0.77875 0.83125 0.88729 0.87565 0.87599 0.88661 0.88565 0.91302 0.92602 0.90599 0.95174 0.92797 0.95632 0.91440 0.92380 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 8.25 59.85 0.49 1.66 16 2 N -0.59 -9.28 2.76 -175.19 -0.48 -9.77 16 3 C 0.59 9.49 7.64 -12.59 -0.10 9.39 16 4 O -0.54 -9.68 13.49 5.25 0.07 -9.60 16 5 C 0.00 0.05 6.43 -84.53 -0.54 -0.49 16 6 N -0.43 -4.91 6.95 -12.36 -0.09 -4.99 16 7 C -0.01 -0.09 12.17 51.43 0.63 0.53 16 8 S 0.19 1.39 21.77 -107.50 -2.34 -0.95 16 9 C -0.15 -1.65 6.04 -35.39 -0.21 -1.86 16 10 C -0.09 -0.95 5.46 -91.77 -0.50 -1.45 16 11 C -0.18 -1.33 10.03 -26.69 -0.27 -1.60 16 12 C -0.16 -1.33 10.24 -26.69 -0.27 -1.60 16 13 C 0.15 2.55 2.47 -67.88 -0.17 2.38 16 14 C -0.14 -2.62 5.36 -26.59 -0.14 -2.77 16 15 C 0.12 2.77 4.14 -3.71 -0.02 2.76 16 16 N -0.61 -14.66 2.85 -172.32 -0.49 -15.15 16 17 C -0.26 -7.20 10.12 -15.06 -0.15 -7.36 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.02 0.50 5.35 -17.43 -0.09 0.40 16 20 N -0.91 -28.39 13.97 55.49 0.78 -27.61 16 21 Si 0.89 22.99 24.21 -169.99 -4.12 18.87 16 22 H -0.29 -7.23 6.53 56.52 0.37 -6.86 16 23 H -0.31 -8.02 7.11 56.52 0.40 -7.62 16 24 H -0.27 -6.81 6.24 56.52 0.35 -6.46 16 25 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 26 C -0.14 -2.41 5.33 -26.61 -0.14 -2.55 16 27 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 28 H 0.08 1.05 5.84 -51.93 -0.30 0.74 16 29 H 0.07 0.92 6.47 -51.93 -0.34 0.58 16 30 H 0.20 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.15 1.97 6.07 -51.93 -0.32 1.66 16 32 H 0.09 0.60 7.28 -51.93 -0.38 0.22 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.83 6.91 -51.93 -0.36 1.47 16 37 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.87 3.66 -51.93 -0.19 1.68 16 40 H 0.03 0.68 6.93 -51.93 -0.36 0.32 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.33 7.91 -51.92 -0.41 0.92 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.17 6.72 -51.93 -0.35 0.82 16 LS Contribution 358.25 15.07 5.40 5.40 Total: -1.00 -33.20 358.25 -9.20 -42.40 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.42 Total: 0.89 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.51 Total: 0.50 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.29 Total: -57.51 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.12 Total: 18.87 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.34 Total: -0.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.20 -9.20 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005982874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.011 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds