Wall clock time and date at job start Tue Mar 31 2020 18:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00128 * 2 1 4 4 O 1.21626 * 120.00171 * 185.08784 * 3 2 1 5 5 C 1.47274 * 119.99682 * 5.08598 * 3 2 1 6 6 N 1.33550 * 123.14346 * 6.20191 * 5 3 2 7 7 C 1.28646 * 115.76701 * 180.02562 * 6 5 3 8 8 S 1.70764 * 110.55923 * 0.02562 * 7 6 5 9 9 C 1.35206 * 123.13893 * 185.91088 * 5 3 2 10 10 C 1.50705 * 125.58425 * 0.02562 * 9 5 3 11 11 C 1.53004 * 117.49590 * 188.74618 * 10 9 5 12 12 C 1.53001 * 117.50190 * 120.08876 * 10 9 5 13 13 C 1.46502 * 119.99901 * 179.97438 * 2 1 3 14 14 C 1.53071 * 109.43923 * 299.79472 * 13 2 1 15 15 C 1.53193 * 109.29565 * 181.23632 * 14 13 2 16 16 N 1.46924 * 108.89187 * 305.58337 * 15 14 13 17 17 C 1.36943 * 120.63080 * 233.51191 * 16 15 14 18 18 H 1.07997 * 120.00198 * 156.30979 * 17 16 15 19 19 C 1.38810 * 119.99644 * 336.31233 * 17 16 15 20 20 N 1.31617 * 120.00207 * 163.22160 * 19 17 16 21 21 Si 1.86807 * 120.00293 * 343.21693 * 19 17 16 22 22 H 1.48499 * 109.47157 * 90.90219 * 21 19 17 23 23 H 1.48494 * 109.47314 * 210.90145 * 21 19 17 24 24 H 1.48495 * 109.46871 * 330.90317 * 21 19 17 25 25 C 1.46921 * 118.73990 * 53.53502 * 16 15 14 26 26 C 1.53034 * 109.46102 * 60.00062 * 13 2 1 27 27 H 1.08995 * 109.47432 * 275.62318 * 1 2 3 28 28 H 1.09001 * 109.46963 * 35.62904 * 1 2 3 29 29 H 1.09005 * 109.47027 * 155.62217 * 1 2 3 30 30 H 1.08009 * 124.71973 * 180.02562 * 7 6 5 31 31 H 1.09000 * 115.55104 * 334.40489 * 10 9 5 32 32 H 1.08998 * 117.50049 * 359.97438 * 11 10 9 33 33 H 1.09002 * 117.49954 * 145.01302 * 11 10 9 34 34 H 1.08998 * 117.49672 * 214.97803 * 12 10 9 35 35 H 1.08997 * 117.49658 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.45905 * 179.97438 * 13 2 1 37 37 H 1.09006 * 109.39133 * 61.36560 * 14 13 2 38 38 H 1.08999 * 109.62608 * 301.25581 * 14 13 2 39 39 H 1.09002 * 109.59143 * 185.71996 * 15 14 13 40 40 H 1.09007 * 109.58781 * 65.43911 * 15 14 13 41 41 H 0.97002 * 120.00489 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.58964 * 66.18184 * 25 16 15 43 43 H 1.09008 * 109.58822 * 186.45800 * 25 16 15 44 44 H 1.09004 * 109.49664 * 58.67856 * 26 13 2 45 45 H 1.08998 * 109.50073 * 298.58153 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1693 -0.0934 5 6 1.4069 2.4401 0.1131 6 7 0.0924 2.5088 0.3387 7 6 -0.4014 3.6946 0.4111 8 16 0.8197 4.8673 0.1876 9 6 2.0038 3.6483 0.0038 10 6 3.4718 3.8819 -0.2447 11 6 3.9874 5.3180 -0.1327 12 6 3.8605 4.6549 -1.5065 13 6 2.1975 -1.2688 0.0006 14 6 1.8311 -2.0680 1.2536 15 6 2.6219 -3.3800 1.2664 16 7 2.3844 -4.0910 0.0028 17 6 1.9511 -5.3901 0.0040 18 1 1.4233 -5.7840 -0.8519 19 6 2.1903 -6.2004 1.1053 20 7 1.5107 -7.3168 1.2610 21 14 3.4768 -5.7067 2.3666 22 1 2.8372 -4.8988 3.4359 23 1 4.0804 -6.9260 2.9614 24 1 4.5355 -4.9026 1.7049 25 6 2.6210 -3.3820 -1.2620 26 6 1.8276 -2.0716 -1.2487 27 1 -0.3634 0.1007 1.0227 28 1 -0.3633 0.8353 -0.5987 29 1 -0.3633 -0.9361 -0.4242 30 1 -1.4432 3.9174 0.5886 31 1 4.1368 3.0817 0.0802 32 1 3.2649 6.0939 0.1202 33 1 4.9917 5.4626 0.2655 34 1 4.7814 4.3635 -2.0116 35 1 3.0545 4.9942 -2.1572 36 1 3.2691 -1.0694 0.0000 37 1 0.7633 -2.2870 1.2437 38 1 2.0756 -1.4871 2.1429 39 1 2.2912 -3.9979 2.1012 40 1 3.6854 -3.1646 1.3702 41 1 1.6780 -7.8833 2.0304 42 1 3.6841 -3.1645 -1.3657 43 1 2.2920 -4.0023 -2.0958 44 1 2.0692 -1.4909 -2.1390 45 1 0.7604 -2.2926 -1.2364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005982874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:54 Heat of formation + Delta-G solvation = 62.847976 kcal Electronic energy + Delta-G solvation = -27164.272032 eV Core-core repulsion = 23503.296462 eV Total energy + Delta-G solvation = -3660.975570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90441 -40.26866 -38.99848 -38.24201 -36.66937 -34.35452 -32.33813 -32.09044 -31.40557 -28.05082 -27.68005 -26.35701 -24.66151 -24.10923 -23.40993 -23.07836 -22.68529 -20.80345 -20.09658 -19.16930 -18.84443 -17.78118 -17.41346 -17.11421 -16.79750 -16.47588 -16.02153 -15.68651 -15.48456 -15.26556 -15.08362 -15.04374 -14.60736 -14.57157 -14.16149 -14.00104 -13.77234 -13.52884 -13.29799 -13.09785 -12.91436 -12.71173 -12.53794 -12.51856 -12.22822 -12.07049 -11.96766 -11.78805 -11.64956 -11.48486 -11.32109 -10.96517 -10.76221 -10.48863 -10.23992 -9.95907 -9.57486 -9.05012 -8.16018 -5.48918 -0.53240 0.21836 0.62013 0.93935 1.25578 1.39079 1.46922 1.95811 2.21386 2.38278 2.88554 3.04109 3.09025 3.27103 3.40701 3.65309 3.75760 3.88296 3.99302 4.00617 4.14879 4.17553 4.23792 4.29642 4.39828 4.53619 4.57009 4.60748 4.66084 4.68340 4.78641 4.79710 4.86171 4.92454 4.98240 5.00515 5.08281 5.10731 5.13241 5.17192 5.36239 5.54193 5.81267 6.10415 6.27295 6.46625 6.85782 7.04189 7.58302 7.97524 9.03563 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022380 B = 0.002871 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.793307 B = 9749.830209 C =10161.821030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.593 5.593 3 C 0.582 3.418 4 O -0.567 6.567 5 C -0.027 4.027 6 N -0.454 5.454 7 C -0.010 4.010 8 S 0.277 5.723 9 C -0.165 4.165 10 C -0.119 4.119 11 C -0.155 4.155 12 C -0.156 4.156 13 C 0.153 3.847 14 C -0.126 4.126 15 C 0.119 3.881 16 N -0.620 5.620 17 C -0.242 4.242 18 H 0.062 0.938 19 C -0.040 4.040 20 N -0.961 5.961 21 Si 0.950 3.050 22 H -0.277 1.277 23 H -0.313 1.313 24 H -0.262 1.262 25 C 0.149 3.851 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.242 0.758 31 H 0.117 0.883 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.261 0.739 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 33.484 -3.330 33.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.322 5.322 3 C 0.370 3.630 4 O -0.448 6.448 5 C -0.161 4.161 6 N -0.169 5.169 7 C -0.309 4.309 8 S 0.535 5.465 9 C -0.289 4.289 10 C -0.140 4.140 11 C -0.193 4.193 12 C -0.194 4.194 13 C 0.050 3.950 14 C -0.166 4.166 15 C -0.006 4.006 16 N -0.344 5.344 17 C -0.372 4.372 18 H 0.079 0.921 19 C -0.234 4.234 20 N -0.608 5.608 21 Si 0.781 3.219 22 H -0.204 1.204 23 H -0.242 1.242 24 H -0.187 1.187 25 C 0.024 3.976 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.258 0.742 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.700 33.933 -3.255 34.196 hybrid contribution 0.842 -1.793 0.793 2.134 sum -1.858 32.140 -2.462 32.288 Atomic orbital electron populations 1.22027 0.77162 1.02983 1.02733 1.47889 1.08571 1.04717 1.71070 1.17579 0.86128 0.83122 0.76179 1.90695 1.14374 1.87001 1.52701 1.20055 0.90133 0.93874 1.12018 1.67305 1.09032 1.25645 1.14907 1.29143 1.07293 0.90420 1.04015 1.82432 0.94775 1.08219 1.61086 1.25087 1.02069 0.97309 1.04476 1.20640 0.89097 0.97962 1.06269 1.23280 1.03954 0.92372 0.99652 1.23181 1.04003 1.01641 0.90581 1.20888 0.96794 0.81965 0.95334 1.22199 1.01207 0.95779 0.97459 1.21433 0.97206 0.92839 0.89131 1.44516 1.78613 1.09932 1.01383 1.18948 1.28172 0.86836 1.03234 0.92052 1.25800 1.00876 0.95996 1.00696 1.69909 1.43171 1.16261 1.31414 0.85956 0.81043 0.75380 0.79531 1.20447 1.24217 1.18683 1.21027 0.97036 0.91926 0.87628 1.22192 1.01246 0.96206 0.96859 0.92449 0.88631 0.91536 0.74188 0.86480 0.86961 0.86642 0.87527 0.87615 0.90086 0.91430 0.91514 0.92546 0.94917 0.92967 0.94847 0.91464 0.90531 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.39 8.25 127.77 1.05 3.45 16 2 N -0.59 -18.29 2.76 -826.43 -2.28 -20.57 16 3 C 0.58 18.69 7.64 86.62 0.66 19.35 16 4 O -0.57 -20.96 13.49 -4.11 -0.06 -21.02 16 5 C -0.03 -0.69 6.43 40.56 0.26 -0.43 16 6 N -0.45 -9.44 6.95 -193.02 -1.34 -10.78 16 7 C -0.01 -0.12 12.17 130.71 1.59 1.47 16 8 S 0.28 2.94 21.77 -56.49 -1.23 1.71 16 9 C -0.16 -3.38 6.04 24.99 0.15 -3.23 16 10 C -0.12 -2.43 5.46 -11.54 -0.06 -2.50 16 11 C -0.16 -1.95 10.03 30.62 0.31 -1.64 16 12 C -0.16 -2.32 10.24 30.62 0.31 -2.00 16 13 C 0.15 5.30 2.47 45.03 0.11 5.41 16 14 C -0.13 -4.70 5.36 30.68 0.16 -4.54 16 15 C 0.12 5.33 4.14 86.36 0.36 5.69 16 16 N -0.62 -29.96 2.85 -699.09 -1.99 -31.95 16 17 C -0.24 -13.94 10.12 84.03 0.85 -13.09 16 18 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 19 C -0.04 -2.37 5.35 84.86 0.45 -1.91 16 20 N -0.96 -61.31 13.97 21.65 0.30 -61.01 16 21 Si 0.95 48.27 24.21 68.60 1.66 49.93 16 22 H -0.28 -13.33 6.53 99.48 0.65 -12.68 16 23 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 24 H -0.26 -12.84 6.24 99.48 0.62 -12.22 16 25 C 0.15 5.93 6.52 86.36 0.56 6.50 16 26 C -0.13 -4.21 5.33 30.67 0.16 -4.05 16 27 H 0.06 1.46 8.07 -2.39 -0.02 1.44 16 28 H 0.10 2.25 5.84 -2.39 -0.01 2.24 16 29 H 0.07 1.71 6.47 -2.38 -0.02 1.69 16 30 H 0.24 0.83 8.06 -2.91 -0.02 0.81 16 31 H 0.12 3.20 6.07 -2.39 -0.01 3.19 16 32 H 0.11 0.99 7.28 -2.39 -0.02 0.97 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 3.08 6.91 -2.39 -0.02 3.07 16 37 H 0.07 2.53 7.72 -2.38 -0.02 2.51 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.06 2.75 3.66 -2.39 -0.01 2.74 16 40 H 0.03 1.46 6.93 -2.38 -0.02 1.44 16 41 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 42 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.65 7.91 -2.38 -0.02 2.63 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.07 2.29 6.72 -2.39 -0.02 2.27 16 Total: -1.00 -74.60 358.25 2.87 -71.73 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.87 Total: 13.50 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.94 Total: 8.46 kcal Atomic # 7 Polarization: -119.00 SS G_CDS: -5.31 Total: -124.31 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.66 Total: 49.93 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.23 Total: 1.71 kcal Total: -74.60 2.87 -71.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005982874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.578 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds