Wall clock time and date at job start Tue Mar 31 2020 18:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 120.00382 * 2 1 4 4 O 1.21690 * 120.00312 * 182.86535 * 3 2 1 5 5 C 1.46689 * 119.99720 * 2.85966 * 3 2 1 6 6 C 1.35661 * 126.12992 * 186.94430 * 5 3 2 7 7 N 1.30940 * 114.19117 * 179.71055 * 6 5 3 8 8 C 1.29426 * 117.36359 * 0.27155 * 7 6 5 9 9 C 1.50699 * 124.80220 * 179.97438 * 8 7 6 10 10 C 1.53000 * 117.50119 * 8.64411 * 9 8 7 11 11 C 1.53000 * 117.49831 * 300.02065 * 9 8 7 12 12 S 1.70949 * 110.39155 * 359.97438 * 8 7 6 13 13 C 1.46500 * 119.99834 * 179.97438 * 2 1 3 14 14 C 1.53042 * 109.45851 * 60.03062 * 13 2 1 15 15 C 1.53191 * 109.31398 * 178.60150 * 14 13 2 16 16 N 1.46930 * 108.76712 * 54.64927 * 15 14 13 17 17 C 1.36942 * 120.62791 * 126.40575 * 16 15 14 18 18 H 1.08001 * 120.00083 * 314.02486 * 17 16 15 19 19 C 1.38809 * 119.99656 * 134.02859 * 17 16 15 20 20 N 1.31621 * 120.00150 * 336.67547 * 19 17 16 21 21 Si 1.86805 * 119.99866 * 156.68097 * 19 17 16 22 22 H 1.48501 * 109.47156 * 59.99675 * 21 19 17 23 23 H 1.48497 * 109.47219 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46585 * 299.99633 * 21 19 17 25 25 C 1.46922 * 118.74104 * 306.38940 * 16 15 14 26 26 C 1.53041 * 109.46156 * 299.97439 * 13 2 1 27 27 H 1.09001 * 109.47287 * 35.80396 * 1 2 3 28 28 H 1.08992 * 109.47571 * 155.80886 * 1 2 3 29 29 H 1.09007 * 109.46938 * 275.80826 * 1 2 3 30 30 H 1.08001 * 122.90389 * 359.97438 * 6 5 3 31 31 H 1.08997 * 115.55025 * 154.35866 * 9 8 7 32 32 H 1.08998 * 117.49858 * 0.02562 * 10 9 8 33 33 H 1.09000 * 117.49904 * 145.02142 * 10 9 8 34 34 H 1.08998 * 117.50085 * 214.98007 * 11 9 8 35 35 H 1.08997 * 117.50320 * 359.97438 * 11 9 8 36 36 H 1.09005 * 109.46354 * 179.97438 * 13 2 1 37 37 H 1.08996 * 109.49506 * 298.56132 * 14 13 2 38 38 H 1.08998 * 109.50105 * 58.66322 * 14 13 2 39 39 H 1.09003 * 109.59574 * 294.87052 * 15 14 13 40 40 H 1.08993 * 109.70566 * 174.50293 * 15 14 13 41 41 H 0.96997 * 120.00140 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.58672 * 293.81922 * 25 16 15 43 43 H 1.09002 * 109.70742 * 173.45974 * 25 16 15 44 44 H 1.08998 * 109.49712 * 301.33418 * 26 13 2 45 45 H 1.08997 * 109.49750 * 61.40486 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3547 1.1678 -0.0527 5 6 1.4068 2.4367 0.0634 6 6 1.9433 3.6765 -0.0615 7 7 1.0718 4.6497 0.0273 8 6 -0.1653 4.3243 0.2240 9 6 -1.3026 5.3046 0.3525 10 6 -1.0076 6.7735 0.0422 11 6 -1.2293 6.3267 1.4886 12 16 -0.3266 2.6250 0.3176 13 6 2.1974 -1.2687 0.0006 14 6 1.8280 -2.0712 -1.2491 15 6 2.6218 -3.3814 -1.2630 16 7 2.3848 -4.0910 0.0016 17 6 1.9517 -5.3902 0.0019 18 1 1.1431 -5.6900 -0.6481 19 6 2.5520 -6.3216 0.8379 20 7 3.7779 -6.1214 1.2735 21 14 1.6202 -7.8593 1.3447 22 1 1.2613 -8.6419 0.1348 23 1 2.4758 -8.6864 2.2329 24 1 0.3829 -7.4720 2.0689 25 6 2.6216 -3.3805 1.2656 26 6 1.8280 -2.0702 1.2509 27 1 -0.3634 0.8335 -0.6012 28 1 -0.3634 -0.9373 -0.4211 29 1 -0.3633 0.1040 1.0225 30 1 2.9974 3.8459 -0.2245 31 1 -2.2867 4.9209 0.0836 32 1 0.0090 7.0307 -0.2553 33 1 -1.7976 7.3564 -0.4312 34 1 -2.1652 6.6158 1.9668 35 1 -0.3587 6.2899 2.1435 36 1 3.2691 -1.0694 0.0000 37 1 0.7608 -2.2924 -1.2371 38 1 2.0697 -1.4903 -2.1392 39 1 3.6849 -3.1636 -1.3659 40 1 2.2933 -4.0013 -2.0970 41 1 4.1975 -6.7724 1.8574 42 1 3.6846 -3.1627 1.3687 43 1 2.2923 -3.9978 2.1015 44 1 2.0697 -1.4885 2.1404 45 1 0.7607 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006322919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:50 Heat of formation + Delta-G solvation = 43.590020 kcal Electronic energy + Delta-G solvation = -26387.554992 eV Core-core repulsion = 22725.744334 eV Total energy + Delta-G solvation = -3661.810658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53032 -40.71500 -38.98806 -37.74090 -36.67302 -34.43400 -32.33299 -31.73442 -30.95552 -28.35021 -27.78428 -26.67411 -24.50022 -23.91913 -23.33140 -23.23436 -22.02852 -20.66657 -19.64730 -19.42773 -18.70918 -17.76501 -17.50607 -16.94619 -16.74283 -16.55039 -15.92506 -15.51461 -15.48022 -15.38995 -15.17067 -14.83441 -14.68478 -14.36011 -14.21557 -14.11123 -13.59077 -13.29633 -13.18719 -13.09221 -12.64787 -12.61167 -12.56392 -12.35749 -12.20718 -12.05939 -11.94858 -11.84910 -11.61664 -11.58064 -11.34441 -11.12167 -10.57706 -10.52757 -10.41207 -10.01705 -9.56510 -8.54352 -7.86717 -5.56614 -0.84628 0.11079 0.54697 1.30006 1.47192 1.49442 1.56904 1.76949 2.02930 2.48905 2.85601 3.05526 3.18614 3.40462 3.64704 3.75945 3.85676 3.91307 3.95541 3.99863 4.06296 4.19519 4.27305 4.33120 4.40413 4.41943 4.57189 4.61710 4.77909 4.79151 4.80996 4.91722 4.98743 4.98859 5.03748 5.12993 5.16255 5.22518 5.28587 5.30294 5.42490 5.52283 5.69524 6.17337 6.46550 6.58638 6.89714 7.13882 7.75362 8.43150 9.09819 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002366 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.117081 B =11832.809466 C =12223.314606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.598 5.598 3 C 0.588 3.412 4 O -0.575 6.575 5 C -0.327 4.327 6 C 0.119 3.881 7 N -0.506 5.506 8 C 0.054 3.946 9 C -0.114 4.114 10 C -0.150 4.150 11 C -0.146 4.146 12 S 0.272 5.728 13 C 0.157 3.843 14 C -0.121 4.121 15 C 0.144 3.856 16 N -0.600 5.600 17 C -0.284 4.284 18 H 0.060 0.940 19 C -0.027 4.027 20 N -0.921 5.921 21 Si 0.962 3.038 22 H -0.270 1.270 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.181 3.819 26 C -0.125 4.125 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.000 1.000 40 H 0.061 0.939 41 H 0.253 0.747 42 H -0.007 1.007 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 23.820 -1.415 29.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.328 5.328 3 C 0.376 3.624 4 O -0.457 6.457 5 C -0.451 4.451 6 C -0.040 4.040 7 N -0.221 5.221 8 C -0.218 4.218 9 C -0.135 4.135 10 C -0.189 4.189 11 C -0.186 4.186 12 S 0.534 5.466 13 C 0.054 3.946 14 C -0.161 4.161 15 C 0.018 3.982 16 N -0.324 5.324 17 C -0.414 4.414 18 H 0.077 0.923 19 C -0.226 4.226 20 N -0.562 5.562 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.223 1.223 24 H -0.197 1.197 25 C 0.054 3.946 26 C -0.165 4.165 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.196 0.804 31 H 0.175 0.825 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.011 0.989 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.016 23.557 -1.234 29.086 hybrid contribution 1.687 -0.956 0.240 1.954 sum -15.329 22.601 -0.994 27.327 Atomic orbital electron populations 1.22281 0.77885 1.04776 1.03954 1.47891 1.08165 1.04975 1.71803 1.17170 0.86268 0.82854 0.76081 1.90809 1.14720 1.87301 1.52826 1.25596 0.99556 0.98140 1.21820 1.22136 1.01064 0.85592 0.95180 1.66244 1.01256 1.36077 1.18490 1.27569 0.95274 1.00657 0.98267 1.20910 0.94852 0.89223 1.08558 1.23063 1.03911 0.93287 0.98644 1.23124 1.04556 0.99531 0.91346 1.83929 1.00528 0.99319 1.62856 1.20875 0.96147 0.81408 0.96183 1.22179 1.01612 0.95968 0.96312 1.21001 0.95306 0.92320 0.89529 1.44116 1.78281 1.09938 1.00075 1.19170 1.11978 0.85591 1.24702 0.92288 1.26268 0.94768 1.00395 1.01212 1.70263 1.12350 1.37821 1.35752 0.85467 0.78292 0.79164 0.78217 1.19571 1.22251 1.19662 1.20486 0.94519 0.90806 0.88755 1.22260 1.01639 0.96126 0.96431 0.89603 0.87380 0.89806 0.80369 0.82543 0.89376 0.85664 0.85109 0.89868 0.91446 0.90113 0.91286 0.98218 0.92072 0.93839 0.98929 0.94196 0.92097 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.01 7.95 127.77 1.02 2.03 16 2 N -0.60 -16.77 2.76 -827.15 -2.28 -19.05 16 3 C 0.59 18.49 7.64 86.45 0.66 19.15 16 4 O -0.57 -23.00 16.21 -4.32 -0.07 -23.07 16 5 C -0.33 -8.15 6.23 23.88 0.15 -8.00 16 6 C 0.12 3.01 11.10 84.23 0.93 3.95 16 7 N -0.51 -11.56 9.98 -190.31 -1.90 -13.46 16 8 C 0.05 0.94 6.96 88.46 0.62 1.56 16 9 C -0.11 -1.24 6.28 -11.54 -0.07 -1.31 16 10 C -0.15 -1.54 10.12 30.59 0.31 -1.23 16 11 C -0.15 -1.36 10.23 30.59 0.31 -1.05 16 12 S 0.27 4.27 18.09 -56.49 -1.02 3.24 16 13 C 0.16 5.38 2.47 45.02 0.11 5.49 16 14 C -0.12 -4.00 5.32 30.67 0.16 -3.84 16 15 C 0.14 6.16 6.52 86.36 0.56 6.72 16 16 N -0.60 -29.86 2.85 -699.09 -1.99 -31.85 16 17 C -0.28 -15.35 9.28 84.03 0.78 -14.57 16 18 H 0.06 3.11 7.93 -2.91 -0.02 3.08 16 19 C -0.03 -1.51 4.78 84.86 0.41 -1.10 16 20 N -0.92 -55.04 12.99 21.65 0.28 -54.76 16 21 Si 0.96 43.51 29.61 68.60 2.03 45.55 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.18 8.54 5.56 86.37 0.48 9.02 16 26 C -0.12 -4.46 5.34 30.67 0.16 -4.30 16 27 H 0.09 1.29 4.81 -19.39 -0.09 1.20 16 28 H 0.11 1.85 6.47 -2.39 -0.02 1.84 16 29 H 0.08 1.29 7.71 -2.38 -0.02 1.27 16 30 H 0.18 4.52 8.06 -2.91 -0.02 4.49 16 31 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.31 7.84 -2.39 -0.02 1.29 16 33 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 2.79 6.90 -2.38 -0.02 2.77 16 37 H 0.08 2.40 6.72 -2.39 -0.02 2.38 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 42 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.04 2.03 7.52 -2.39 -0.02 2.01 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.08 2.55 7.72 -2.39 -0.02 2.53 16 Total: -1.00 -72.47 372.66 2.56 -69.92 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.91 Total: 10.99 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.59 Total: 12.50 kcal Atomic # 7 Polarization: -113.23 SS G_CDS: -5.89 Total: -119.13 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.02 Total: 3.24 kcal Total: -72.47 2.56 -69.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006322919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.508 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds