Wall clock time and date at job start Tue Mar 31 2020 18:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.99782 * 2 1 4 4 O 1.21632 * 120.00193 * 185.26293 * 3 2 1 5 5 C 1.47268 * 120.00332 * 5.25693 * 3 2 1 6 6 C 1.35204 * 123.14599 * 186.52380 * 5 3 2 7 7 S 1.70940 * 108.83030 * 179.97438 * 6 5 3 8 8 C 1.70774 * 91.12958 * 359.97438 * 7 6 5 9 9 C 1.50692 * 124.72109 * 180.02562 * 8 7 6 10 10 C 1.53006 * 117.49825 * 8.60583 * 9 8 7 11 11 C 1.52997 * 117.50452 * 299.98334 * 9 8 7 12 12 N 1.28654 * 110.55595 * 359.76722 * 8 7 6 13 13 C 1.46493 * 120.00216 * 179.97438 * 2 1 3 14 14 C 1.53360 * 109.41488 * 60.13029 * 13 2 1 15 15 C 1.53188 * 109.14700 * 178.67152 * 14 13 2 16 16 N 1.46929 * 108.89473 * 54.58232 * 15 14 13 17 17 C 1.36929 * 120.63419 * 126.29253 * 16 15 14 18 18 H 1.07996 * 120.00563 * 320.54346 * 17 16 15 19 19 C 1.38814 * 120.00211 * 140.54449 * 17 16 15 20 20 N 1.31624 * 119.99707 * 351.91727 * 19 17 16 21 21 Si 1.86799 * 120.00515 * 171.91765 * 19 17 16 22 22 H 1.48501 * 109.46820 * 60.00027 * 21 19 17 23 23 H 1.48501 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47148 * 300.00219 * 21 19 17 25 25 C 1.46937 * 118.73634 * 306.31956 * 16 15 14 26 26 C 1.53038 * 109.46435 * 300.00573 * 13 2 1 27 27 H 1.08995 * 109.47120 * 275.99291 * 1 2 3 28 28 H 1.09000 * 109.46648 * 35.98932 * 1 2 3 29 29 H 1.08994 * 109.46963 * 155.98967 * 1 2 3 30 30 H 1.08005 * 125.58439 * 359.96139 * 6 5 3 31 31 H 1.09002 * 115.54746 * 154.30372 * 9 8 7 32 32 H 1.09002 * 117.49802 * 359.97438 * 10 9 8 33 33 H 1.09001 * 117.50048 * 145.02051 * 10 9 8 34 34 H 1.08999 * 117.50160 * 214.98248 * 11 9 8 35 35 H 1.09007 * 117.49613 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46060 * 180.02562 * 13 2 1 37 37 H 1.08995 * 109.68083 * 58.70892 * 14 13 2 38 38 H 1.08997 * 109.47415 * 298.51040 * 14 13 2 39 39 H 1.08992 * 109.59210 * 294.72205 * 15 14 13 40 40 H 1.08999 * 109.58461 * 174.43352 * 15 14 13 41 41 H 0.97000 * 119.99898 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.58326 * 173.39419 * 25 16 15 43 43 H 1.09002 * 109.58261 * 293.67849 * 25 16 15 44 44 H 1.09002 * 109.49946 * 61.42921 * 26 13 2 45 45 H 1.08999 * 109.49450 * 301.33855 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1695 -0.0966 5 6 1.4072 2.4399 0.1168 6 6 2.0017 3.6482 -0.0041 7 16 0.8196 4.8670 0.1937 8 6 -0.3997 3.6940 0.4255 9 6 -1.8519 4.0045 0.6816 10 6 -2.2989 5.4607 0.5380 11 6 -2.1897 4.8273 1.9264 12 7 0.0932 2.5083 0.3459 13 6 2.1976 -1.2686 0.0006 14 6 1.8287 -2.0709 -1.2533 15 6 2.6227 -3.3809 -1.2634 16 7 2.3851 -4.0909 0.0008 17 6 1.9512 -5.3897 0.0007 18 1 1.2166 -5.7136 -0.7216 19 6 2.4556 -6.2901 0.9291 20 7 3.4618 -5.9427 1.7033 21 14 1.7064 -7.9946 1.0797 22 1 1.8334 -8.7074 -0.2169 23 1 2.4199 -8.7575 2.1352 24 1 0.2708 -7.8743 1.4399 25 6 2.6213 -3.3807 1.2652 26 6 1.8277 -2.0705 1.2505 27 1 -0.3633 0.1073 1.0220 28 1 -0.3632 0.8315 -0.6039 29 1 -0.3633 -0.9387 -0.4181 30 1 3.0516 3.8159 -0.1943 31 1 -2.5579 3.2293 0.3838 32 1 -1.5425 6.1942 0.2588 33 1 -3.2993 5.6438 0.1457 34 1 -3.1181 4.5937 2.4475 35 1 -1.3615 5.1438 2.5605 36 1 3.2692 -1.0692 0.0009 37 1 2.0712 -1.4916 -2.1442 38 1 0.7615 -2.2923 -1.2421 39 1 3.6857 -3.1631 -1.3659 40 1 2.2945 -4.0007 -2.0978 41 1 3.8145 -6.5720 2.3518 42 1 2.2899 -3.9993 2.0992 43 1 3.6846 -3.1651 1.3700 44 1 0.7604 -2.2918 1.2382 45 1 2.0688 -1.4890 2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006467152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:58 Heat of formation + Delta-G solvation = 67.920677 kcal Electronic energy + Delta-G solvation = -26638.371633 eV Core-core repulsion = 22977.616031 eV Total energy + Delta-G solvation = -3660.755601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78624 -39.12756 -37.64451 -37.09358 -35.01212 -32.39938 -30.79200 -30.12196 -29.61485 -26.70739 -26.49025 -25.12228 -23.68012 -22.96046 -22.11185 -21.69500 -20.77484 -19.43180 -18.84208 -18.26279 -16.79574 -16.71509 -16.05006 -15.94897 -15.55143 -15.04713 -14.75227 -14.24443 -14.14195 -13.82422 -13.56597 -13.36083 -12.94639 -12.79262 -12.75827 -12.57649 -12.42306 -12.23046 -12.05103 -11.83980 -11.40195 -11.32971 -11.08716 -11.05287 -10.79627 -10.73870 -10.32802 -10.18451 -10.10560 -9.98571 -9.84589 -9.80221 -9.67607 -9.42374 -9.07838 -8.47640 -8.22048 -6.47293 -5.77304 -3.33268 0.26180 0.91872 1.33393 1.80469 3.17019 3.26684 3.38566 3.39914 3.44143 3.45063 3.59740 4.24790 4.39807 4.45102 4.49881 4.74538 4.91920 5.08141 5.10096 5.29649 5.36489 5.41935 5.46688 5.51798 5.54806 5.57184 5.61491 5.63032 5.91174 5.92217 6.13885 6.17593 6.33248 6.40274 6.55070 6.64319 6.67979 6.84822 6.95161 7.03212 7.23039 7.35607 7.58440 7.68446 7.83185 8.29163 8.55483 9.25587 9.83960 10.48764 11.30875 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002477 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.017077 B =11300.237637 C =11912.592835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.588 5.588 3 C 0.585 3.415 4 O -0.540 6.540 5 C 0.021 3.979 6 C -0.229 4.229 7 S 0.199 5.801 8 C 0.052 3.948 9 C -0.084 4.084 10 C -0.170 4.170 11 C -0.159 4.159 12 N -0.431 5.431 13 C 0.145 3.855 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.590 5.590 17 C -0.261 4.261 18 H 0.060 0.940 19 C 0.013 3.987 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.281 1.281 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.179 3.821 26 C -0.144 4.144 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.189 0.811 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 25.767 -2.051 28.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C 0.370 3.630 4 O -0.418 6.418 5 C -0.113 4.113 6 C -0.371 4.371 7 S 0.456 5.544 8 C -0.227 4.227 9 C -0.106 4.106 10 C -0.208 4.208 11 C -0.198 4.198 12 N -0.146 5.146 13 C 0.043 3.957 14 C -0.178 4.178 15 C 0.021 3.979 16 N -0.313 5.313 17 C -0.391 4.391 18 H 0.077 0.923 19 C -0.187 4.187 20 N -0.542 5.542 21 Si 0.733 3.267 22 H -0.207 1.207 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.053 3.947 26 C -0.184 4.184 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.207 0.793 31 H 0.153 0.847 32 H 0.116 0.884 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.014 26.205 -1.934 28.492 hybrid contribution 0.128 -1.798 0.118 1.807 sum -10.885 24.407 -1.815 26.786 Atomic orbital electron populations 1.21933 0.78806 1.02338 1.02302 1.47990 1.07767 1.05650 1.70433 1.17147 0.86239 0.82246 0.77416 1.90803 1.12978 1.86685 1.51288 1.20535 0.88815 0.95204 1.06792 1.26613 1.06893 0.95876 1.07695 1.82672 0.97559 1.11083 1.63039 1.26350 1.00198 0.91555 1.04576 1.20400 0.89046 0.96283 1.04851 1.23160 1.03616 0.93608 1.00401 1.23159 1.04080 1.01914 0.90654 1.67254 1.10038 1.22936 1.14403 1.21320 0.97183 0.80686 0.96503 1.22436 1.01393 0.98104 0.95840 1.20889 0.95718 0.90753 0.90500 1.43925 1.78004 1.10217 0.99136 1.19014 1.17570 0.85182 1.17343 0.92289 1.25400 0.95665 0.97681 0.99938 1.69966 1.24644 1.35440 1.24114 0.86384 0.78634 0.84277 0.77451 1.20732 1.21599 1.20865 1.20661 0.95352 0.88497 0.90207 1.22557 1.01721 0.98864 0.95273 0.92601 0.90089 0.91478 0.79341 0.84667 0.88360 0.87130 0.87308 0.88198 0.88687 0.92935 0.92042 0.96214 0.92447 0.93464 0.90390 0.95922 0.92324 0.93200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 8.23 59.85 0.49 1.77 16 2 N -0.59 -9.99 2.76 -175.03 -0.48 -10.47 16 3 C 0.58 10.20 7.64 -12.59 -0.10 10.10 16 4 O -0.54 -10.90 16.07 5.25 0.08 -10.81 16 5 C 0.02 0.30 6.43 -84.52 -0.54 -0.24 16 6 C -0.23 -2.63 10.62 29.65 0.31 -2.31 16 7 S 0.20 1.59 21.65 -107.50 -2.33 -0.74 16 8 C 0.05 0.50 6.99 -13.61 -0.10 0.40 16 9 C -0.08 -0.57 6.33 -91.77 -0.58 -1.15 16 10 C -0.17 -0.75 10.01 -26.73 -0.27 -1.02 16 11 C -0.16 -0.81 10.23 -26.73 -0.27 -1.09 16 12 N -0.43 -5.41 6.95 -8.51 -0.06 -5.47 16 13 C 0.14 2.77 2.47 -67.73 -0.17 2.60 16 14 C -0.14 -2.57 5.35 -26.45 -0.14 -2.71 16 15 C 0.15 3.26 6.50 -3.71 -0.02 3.23 16 16 N -0.59 -15.11 2.94 -172.32 -0.51 -15.62 16 17 C -0.26 -7.24 9.48 -15.06 -0.14 -7.38 16 18 H 0.06 1.61 7.84 -52.49 -0.41 1.19 16 19 C 0.01 0.37 5.07 -17.43 -0.09 0.29 16 20 N -0.90 -26.49 11.55 55.49 0.64 -25.85 16 21 Si 0.90 21.77 29.56 -169.99 -5.03 16.74 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.18 4.40 5.22 -3.71 -0.02 4.38 16 26 C -0.14 -2.92 5.34 -26.62 -0.14 -3.06 16 27 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 28 H 0.08 1.08 5.88 -51.93 -0.31 0.78 16 29 H 0.07 0.95 6.48 -51.93 -0.34 0.61 16 30 H 0.19 2.01 8.04 -52.48 -0.42 1.58 16 31 H 0.14 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.40 7.21 -51.93 -0.37 0.02 16 33 H 0.11 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.10 2.03 6.91 -51.93 -0.36 1.67 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.13 6.73 -51.93 -0.35 0.78 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.08 2.10 6.67 -51.93 -0.35 1.75 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 1.17 7.72 -51.93 -0.40 0.77 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.56 371.63 -10.50 -43.06 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.65 Total: -0.24 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.78 Total: 3.80 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.41 Total: -57.41 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.33 Total: -0.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.56 -10.50 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006467152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.981 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds