Wall clock time and date at job start Tue Mar 31 2020 18:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34775 * 119.99782 * 2 1 4 4 O 1.21632 * 120.00193 * 185.26293 * 3 2 1 5 5 C 1.47268 * 120.00332 * 5.25693 * 3 2 1 6 6 C 1.35204 * 123.14599 * 186.52380 * 5 3 2 7 7 S 1.70940 * 108.83030 * 179.97438 * 6 5 3 8 8 C 1.70774 * 91.12958 * 359.97438 * 7 6 5 9 9 C 1.50692 * 124.72109 * 180.02562 * 8 7 6 10 10 C 1.53006 * 117.49825 * 8.60583 * 9 8 7 11 11 C 1.52997 * 117.50452 * 299.98334 * 9 8 7 12 12 N 1.28654 * 110.55595 * 359.76722 * 8 7 6 13 13 C 1.46493 * 120.00216 * 179.97438 * 2 1 3 14 14 C 1.53360 * 109.41488 * 60.13029 * 13 2 1 15 15 C 1.53188 * 109.14700 * 178.67152 * 14 13 2 16 16 N 1.46929 * 108.89473 * 54.58232 * 15 14 13 17 17 C 1.36929 * 120.63419 * 126.29253 * 16 15 14 18 18 H 1.07996 * 120.00563 * 320.54346 * 17 16 15 19 19 C 1.38814 * 120.00211 * 140.54449 * 17 16 15 20 20 N 1.31624 * 119.99707 * 351.91727 * 19 17 16 21 21 Si 1.86799 * 120.00515 * 171.91765 * 19 17 16 22 22 H 1.48501 * 109.46820 * 60.00027 * 21 19 17 23 23 H 1.48501 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47148 * 300.00219 * 21 19 17 25 25 C 1.46937 * 118.73634 * 306.31956 * 16 15 14 26 26 C 1.53038 * 109.46435 * 300.00573 * 13 2 1 27 27 H 1.08995 * 109.47120 * 275.99291 * 1 2 3 28 28 H 1.09000 * 109.46648 * 35.98932 * 1 2 3 29 29 H 1.08994 * 109.46963 * 155.98967 * 1 2 3 30 30 H 1.08005 * 125.58439 * 359.96139 * 6 5 3 31 31 H 1.09002 * 115.54746 * 154.30372 * 9 8 7 32 32 H 1.09002 * 117.49802 * 359.97438 * 10 9 8 33 33 H 1.09001 * 117.50048 * 145.02051 * 10 9 8 34 34 H 1.08999 * 117.50160 * 214.98248 * 11 9 8 35 35 H 1.09007 * 117.49613 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.46060 * 180.02562 * 13 2 1 37 37 H 1.08995 * 109.68083 * 58.70892 * 14 13 2 38 38 H 1.08997 * 109.47415 * 298.51040 * 14 13 2 39 39 H 1.08992 * 109.59210 * 294.72205 * 15 14 13 40 40 H 1.08999 * 109.58461 * 174.43352 * 15 14 13 41 41 H 0.97000 * 119.99898 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.58326 * 173.39419 * 25 16 15 43 43 H 1.09002 * 109.58261 * 293.67849 * 25 16 15 44 44 H 1.09002 * 109.49946 * 61.42921 * 26 13 2 45 45 H 1.08999 * 109.49450 * 301.33855 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1695 -0.0966 5 6 1.4072 2.4399 0.1168 6 6 2.0017 3.6482 -0.0041 7 16 0.8196 4.8670 0.1937 8 6 -0.3997 3.6940 0.4255 9 6 -1.8519 4.0045 0.6816 10 6 -2.2989 5.4607 0.5380 11 6 -2.1897 4.8273 1.9264 12 7 0.0932 2.5083 0.3459 13 6 2.1976 -1.2686 0.0006 14 6 1.8287 -2.0709 -1.2533 15 6 2.6227 -3.3809 -1.2634 16 7 2.3851 -4.0909 0.0008 17 6 1.9512 -5.3897 0.0007 18 1 1.2166 -5.7136 -0.7216 19 6 2.4556 -6.2901 0.9291 20 7 3.4618 -5.9427 1.7033 21 14 1.7064 -7.9946 1.0797 22 1 1.8334 -8.7074 -0.2169 23 1 2.4199 -8.7575 2.1352 24 1 0.2708 -7.8743 1.4399 25 6 2.6213 -3.3807 1.2652 26 6 1.8277 -2.0705 1.2505 27 1 -0.3633 0.1073 1.0220 28 1 -0.3632 0.8315 -0.6039 29 1 -0.3633 -0.9387 -0.4181 30 1 3.0516 3.8159 -0.1943 31 1 -2.5579 3.2293 0.3838 32 1 -1.5425 6.1942 0.2588 33 1 -3.2993 5.6438 0.1457 34 1 -3.1181 4.5937 2.4475 35 1 -1.3615 5.1438 2.5605 36 1 3.2692 -1.0692 0.0009 37 1 2.0712 -1.4916 -2.1442 38 1 0.7615 -2.2923 -1.2421 39 1 3.6857 -3.1631 -1.3659 40 1 2.2945 -4.0007 -2.0978 41 1 3.8145 -6.5720 2.3518 42 1 2.2899 -3.9993 2.0992 43 1 3.6846 -3.1651 1.3700 44 1 0.7604 -2.2918 1.2382 45 1 2.0688 -1.4890 2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006467152.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:57 Heat of formation + Delta-G solvation = 49.217483 kcal Electronic energy + Delta-G solvation = -26639.182664 eV Core-core repulsion = 22977.616031 eV Total energy + Delta-G solvation = -3661.566633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87001 -40.29023 -38.95323 -37.92675 -36.62579 -34.28669 -32.05870 -31.65949 -31.33230 -28.02872 -27.61177 -26.60955 -24.94944 -23.90065 -23.30726 -23.14450 -21.61491 -20.72658 -20.30783 -19.31642 -18.70528 -17.69467 -17.12555 -17.07945 -16.76051 -16.71154 -15.84605 -15.52106 -15.42165 -15.17001 -14.98643 -14.81264 -14.49950 -14.29483 -14.18782 -13.88659 -13.43200 -13.27041 -13.16560 -12.99538 -12.84507 -12.67664 -12.57873 -12.37514 -12.17946 -12.02966 -11.93890 -11.86942 -11.57271 -11.49118 -11.38339 -11.18331 -10.66656 -10.58497 -10.49608 -9.91071 -9.58605 -8.56618 -7.89656 -5.50522 -0.57466 0.18651 0.53366 0.82177 1.46977 1.49228 1.56198 1.93900 2.16057 2.49167 2.70531 3.00985 3.27544 3.51037 3.63898 3.79756 3.85196 3.99928 4.02748 4.05753 4.13188 4.25262 4.31832 4.40799 4.41897 4.57680 4.61494 4.73563 4.77130 4.78495 4.82800 4.98373 5.01040 5.02216 5.08535 5.10393 5.12286 5.22955 5.26252 5.37492 5.53459 5.61108 5.64531 6.24836 6.43056 6.44188 6.98226 7.14145 7.78177 8.39161 9.16641 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002477 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.017077 B =11300.237637 C =11912.592835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.590 5.590 3 C 0.579 3.421 4 O -0.579 6.579 5 C -0.007 4.007 6 C -0.243 4.243 7 S 0.292 5.708 8 C 0.044 3.956 9 C -0.107 4.107 10 C -0.152 4.152 11 C -0.157 4.157 12 N -0.456 5.456 13 C 0.153 3.847 14 C -0.121 4.121 15 C 0.146 3.854 16 N -0.606 5.606 17 C -0.272 4.272 18 H 0.065 0.935 19 C -0.041 4.041 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.273 1.273 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.189 3.811 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.190 0.810 31 H 0.136 0.864 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.007 0.993 40 H 0.064 0.936 41 H 0.252 0.748 42 H 0.049 0.951 43 H -0.007 1.007 44 H 0.067 0.933 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 28.078 -2.682 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.319 5.319 3 C 0.366 3.634 4 O -0.460 6.460 5 C -0.141 4.141 6 C -0.386 4.386 7 S 0.551 5.449 8 C -0.235 4.235 9 C -0.128 4.128 10 C -0.190 4.190 11 C -0.195 4.195 12 N -0.171 5.171 13 C 0.050 3.950 14 C -0.160 4.160 15 C 0.020 3.980 16 N -0.330 5.330 17 C -0.403 4.403 18 H 0.083 0.917 19 C -0.238 4.238 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.063 3.937 26 C -0.165 4.165 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.208 0.792 31 H 0.154 0.846 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.025 0.975 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.085 0.915 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.849 28.557 -2.587 31.843 hybrid contribution 0.984 -2.337 0.311 2.555 sum -12.865 26.220 -2.276 29.295 Atomic orbital electron populations 1.22013 0.76878 1.02992 1.02744 1.47942 1.08759 1.04744 1.70437 1.17661 0.86037 0.83376 0.76326 1.90765 1.14745 1.87437 1.53089 1.20108 0.89870 0.94141 1.10009 1.26883 1.08201 0.96801 1.06732 1.82317 0.94371 1.07781 1.60418 1.26892 1.01886 0.91581 1.03100 1.20545 0.87411 0.97914 1.06975 1.23301 1.04630 0.91646 0.99446 1.23270 1.04537 1.01020 0.90719 1.67182 1.09218 1.24761 1.15971 1.20963 0.96111 0.81847 0.96043 1.22228 1.01276 0.96266 0.96277 1.20989 0.95635 0.92169 0.89224 1.44163 1.78187 1.10269 1.00379 1.19380 1.17512 0.86125 1.17236 0.91720 1.26211 0.96190 1.01575 0.99815 1.70143 1.26268 1.36590 1.24875 0.85291 0.77959 0.79444 0.77378 1.19839 1.22049 1.19862 1.20395 0.94161 0.89917 0.89268 1.22277 1.01189 0.96750 0.96318 0.92421 0.88828 0.91162 0.79233 0.84585 0.87743 0.85300 0.86083 0.88382 0.91339 0.91175 0.90930 0.97472 0.91713 0.93926 0.93258 0.98853 0.91479 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.63 8.23 127.77 1.05 3.68 16 2 N -0.59 -20.02 2.76 -825.91 -2.28 -22.29 16 3 C 0.58 20.52 7.64 86.62 0.66 21.18 16 4 O -0.58 -24.29 16.07 -4.13 -0.07 -24.36 16 5 C -0.01 -0.18 6.43 40.56 0.26 0.08 16 6 C -0.24 -5.34 10.62 67.12 0.71 -4.62 16 7 S 0.29 3.84 21.65 -56.49 -1.22 2.62 16 8 C 0.04 0.74 6.99 88.57 0.62 1.36 16 9 C -0.11 -1.16 6.33 -11.54 -0.07 -1.23 16 10 C -0.15 -0.78 10.01 30.60 0.31 -0.47 16 11 C -0.16 -1.11 10.23 30.59 0.31 -0.80 16 12 N -0.46 -10.85 6.95 -180.83 -1.26 -12.11 16 13 C 0.15 5.96 2.47 45.13 0.11 6.07 16 14 C -0.12 -4.45 5.35 30.78 0.16 -4.29 16 15 C 0.15 6.48 6.50 86.36 0.56 7.04 16 16 N -0.61 -31.77 2.94 -699.11 -2.05 -33.82 16 17 C -0.27 -15.25 9.48 84.04 0.80 -14.45 16 18 H 0.07 3.49 7.84 -2.91 -0.02 3.47 16 19 C -0.04 -2.35 5.07 84.86 0.43 -1.92 16 20 N -0.93 -56.86 11.55 21.65 0.25 -56.61 16 21 Si 0.97 45.15 29.56 68.60 2.03 47.18 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C 0.19 9.69 5.22 86.36 0.45 10.14 16 26 C -0.13 -5.18 5.34 30.67 0.16 -5.02 16 27 H 0.06 1.56 8.05 -2.39 -0.02 1.55 16 28 H 0.09 2.38 5.88 -2.39 -0.01 2.36 16 29 H 0.07 1.86 6.48 -2.39 -0.02 1.85 16 30 H 0.19 3.97 8.04 -2.91 -0.02 3.94 16 31 H 0.14 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 0.40 7.21 -2.39 -0.02 0.39 16 33 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.07 3.06 6.91 -2.39 -0.02 3.04 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.07 2.54 6.73 -2.39 -0.02 2.53 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.06 2.74 7.93 -2.39 -0.02 2.72 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.05 2.78 6.67 -2.39 -0.02 2.76 16 43 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.07 2.66 7.72 -2.39 -0.02 2.64 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.97 371.63 2.93 -70.04 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.00 Total: 12.62 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 6.53 Total: 16.74 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -5.34 Total: -124.84 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.07 Total: -24.36 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.22 Total: 2.62 kcal Total: -72.97 2.93 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006467152.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.256 kcal (2) G-P(sol) polarization free energy of solvation -72.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds