Wall clock time and date at job start Tue Mar 31 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36942 * 120.00207 * 2 1 4 4 H 1.07994 * 120.00037 * 203.03467 * 3 2 1 5 5 C 1.38817 * 119.99745 * 23.04039 * 3 2 1 6 6 N 1.31620 * 120.00002 * 12.54964 * 5 3 2 7 7 Si 1.86793 * 119.99594 * 192.55252 * 5 3 2 8 8 H 1.48503 * 109.47444 * 59.99720 * 7 5 3 9 9 H 1.48502 * 109.47274 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47192 * 299.99790 * 7 5 3 11 11 C 1.46499 * 119.99869 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49712 * 180.02562 * 11 2 1 13 13 C 1.53047 * 109.49624 * 60.00475 * 11 2 1 14 14 C 1.53035 * 109.53706 * 178.68059 * 13 11 2 15 15 C 1.53196 * 109.31339 * 61.36824 * 14 13 11 16 16 N 1.46932 * 108.77313 * 305.36201 * 15 14 13 17 17 C 1.34775 * 120.62935 * 233.58982 * 16 15 14 18 18 O 1.21623 * 119.99673 * 183.94313 * 17 16 15 19 19 C 1.47251 * 119.99957 * 3.93792 * 17 16 15 20 20 N 1.29774 * 125.52292 * 131.75082 * 19 17 16 21 21 C 1.32593 * 116.75296 * 179.97438 * 20 19 17 22 22 C 1.34624 * 114.31120 * 0.04586 * 21 20 19 23 23 S 1.71631 * 109.59826 * 359.66563 * 22 21 20 24 24 C 1.51944 * 110.68819 * 179.97438 * 22 21 20 25 25 C 1.54235 * 104.84479 * 342.61073 * 24 22 21 26 26 C 1.52799 * 136.15878 * 180.02562 * 21 20 19 27 27 C 1.46923 * 118.73924 * 53.60609 * 16 15 14 28 28 H 1.09000 * 109.47245 * 266.98945 * 1 2 3 29 29 H 1.09004 * 109.46565 * 26.98396 * 1 2 3 30 30 H 1.08994 * 109.46892 * 146.98163 * 1 2 3 31 31 H 0.96999 * 119.99486 * 179.97438 * 6 5 3 32 32 H 1.08999 * 109.45497 * 298.70506 * 13 11 2 33 33 H 1.09000 * 109.45761 * 58.65669 * 13 11 2 34 34 H 1.09001 * 109.49692 * 181.31298 * 14 13 11 35 35 H 1.08997 * 109.50405 * 301.38103 * 14 13 11 36 36 H 1.09001 * 109.59100 * 65.14784 * 15 14 13 37 37 H 1.08996 * 109.58929 * 185.43620 * 15 14 13 38 38 H 1.09000 * 110.36457 * 223.77261 * 24 22 21 39 39 H 1.08993 * 110.46132 * 101.49985 * 24 22 21 40 40 H 1.09004 * 110.95626 * 268.38361 * 25 24 22 41 41 H 1.09005 * 110.98289 * 144.68338 * 25 24 22 42 42 H 1.09001 * 110.31241 * 316.46450 * 26 21 20 43 43 H 1.09002 * 110.31106 * 78.53765 * 26 21 20 44 44 H 1.08997 * 109.58715 * 186.60265 * 27 16 15 45 45 H 1.09003 * 109.58368 * 66.18012 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1652 1.2232 -0.3660 5 6 1.5388 2.3402 0.4705 6 7 0.4079 2.2604 1.1392 7 14 2.3215 4.0065 0.1545 8 1 2.4339 4.2311 -1.3091 9 1 1.4784 5.0713 0.7549 10 1 3.6743 4.0419 0.7660 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0009 13 6 1.8283 -2.0723 -1.2486 14 6 2.6176 -3.3832 -1.2656 15 6 2.2496 -4.2124 -0.0311 16 7 2.4652 -3.3937 1.1698 17 6 3.2357 -3.8452 2.1793 18 8 3.3487 -3.1901 3.1978 19 6 3.9404 -5.1315 2.0491 20 7 5.1935 -5.3354 2.3181 21 6 5.6498 -6.5673 2.1385 22 6 4.7270 -7.4408 1.6939 23 16 3.2188 -6.6420 1.5118 24 6 5.3361 -8.8215 1.5168 25 6 6.8594 -8.5808 1.4898 26 6 6.9898 -7.2818 2.3077 27 6 1.8248 -2.0738 1.2494 28 1 -0.3634 -0.0540 1.0262 29 1 -0.3632 0.9158 -0.4663 30 1 -0.3633 -0.8617 -0.5600 31 1 -0.0188 3.0669 1.4683 32 1 0.7606 -2.2913 -1.2369 33 1 2.0698 -1.4912 -2.1386 34 1 2.3716 -3.9443 -2.1672 35 1 3.6855 -3.1652 -1.2529 36 1 1.2020 -4.5080 -0.0885 37 1 2.8783 -5.1016 0.0126 38 1 5.0055 -9.2643 0.5773 39 1 5.0688 -9.4661 2.3540 40 1 7.2129 -8.4344 0.4692 41 1 7.3927 -9.4008 1.9710 42 1 7.7992 -6.6661 1.9152 43 1 7.1658 -7.5121 3.3585 44 1 2.1750 -1.5509 2.1393 45 1 0.7426 -2.1951 1.2964 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027492318.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:13 Heat of formation + Delta-G solvation = 25.200958 kcal Electronic energy + Delta-G solvation = -26856.868072 eV Core-core repulsion = 23194.260004 eV Total energy + Delta-G solvation = -3662.608067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77504 -40.98372 -39.01883 -36.92178 -36.85896 -34.10232 -32.93311 -31.01552 -29.68481 -29.40056 -28.05057 -27.17930 -25.76410 -24.94328 -23.20754 -22.66324 -21.53348 -20.49639 -19.59744 -19.42288 -18.78171 -18.26435 -17.38877 -17.09287 -16.69081 -16.29631 -15.78994 -15.44939 -15.33285 -15.22442 -14.98936 -14.76070 -14.42531 -14.34788 -13.99049 -13.93969 -13.74299 -13.63454 -13.08618 -12.97741 -12.83852 -12.53467 -12.39580 -12.22399 -12.18433 -12.15676 -12.12299 -11.90063 -11.88172 -11.74669 -11.57935 -11.44164 -10.74017 -10.63736 -10.39556 -9.92686 -9.55610 -8.78524 -7.87854 -5.34385 -0.77393 -0.15514 0.53039 1.11460 1.40715 1.44728 1.46915 1.53151 1.93481 2.48301 2.79478 3.26837 3.34035 3.47280 3.54355 3.90601 3.95161 3.96872 3.99478 4.15084 4.15212 4.30135 4.39579 4.48430 4.53276 4.59494 4.73449 4.73598 4.78168 4.82390 4.88450 4.90053 4.98936 5.08562 5.10280 5.17326 5.25742 5.30944 5.31189 5.37718 5.53092 5.58939 5.71217 6.05647 6.31163 6.49399 6.76364 7.12623 7.83455 8.25867 9.16244 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.002752 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.835427 B =10172.913735 C =10542.690311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.606 5.606 3 C -0.268 4.268 4 H 0.065 0.935 5 C -0.050 4.050 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.273 1.273 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.166 3.834 12 H 0.041 0.959 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.089 3.911 16 N -0.587 5.587 17 C 0.588 3.412 18 O -0.565 6.565 19 C -0.028 4.028 20 N -0.444 5.444 21 C 0.001 3.999 22 C -0.253 4.253 23 S 0.272 5.728 24 C -0.037 4.037 25 C -0.104 4.104 26 C -0.045 4.045 27 C 0.115 3.885 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.250 0.750 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.047 0.953 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.263 -29.933 -5.945 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.328 5.328 3 C -0.398 4.398 4 H 0.083 0.917 5 C -0.246 4.246 6 N -0.581 5.581 7 Si 0.797 3.203 8 H -0.199 1.199 9 H -0.218 1.218 10 H -0.208 1.208 11 C 0.058 3.942 12 H 0.059 0.941 13 C -0.160 4.160 14 C -0.158 4.158 15 C -0.033 4.033 16 N -0.320 5.320 17 C 0.372 3.628 18 O -0.443 6.443 19 C -0.305 4.305 20 N -0.160 5.160 21 C -0.134 4.134 22 C -0.376 4.376 23 S 0.529 5.471 24 C -0.077 4.077 25 C -0.143 4.143 26 C -0.085 4.085 27 C -0.009 4.009 28 H 0.010 0.990 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.441 -29.228 -5.483 30.428 hybrid contribution 1.072 1.863 0.908 2.334 sum 7.513 -27.365 -4.574 28.744 Atomic orbital electron populations 1.20556 0.82223 0.97513 0.96603 1.44148 1.02315 1.00706 1.85661 1.19490 0.98553 0.86742 1.35045 0.91731 1.25792 0.98669 1.01927 0.98192 1.70217 1.20367 1.27844 1.39714 0.85316 0.77443 0.79459 0.78062 1.19894 1.21775 1.20811 1.20795 0.94903 0.85487 0.93040 0.94070 1.21916 1.00958 0.95759 0.97407 1.21867 1.00031 0.95694 0.98240 1.22487 1.04098 0.93646 0.83069 1.48143 1.47364 1.18619 1.17839 1.17254 0.78807 0.83310 0.83440 1.90814 1.64192 1.58424 1.30907 1.26535 0.93657 0.99426 1.10844 1.65703 1.12249 1.23734 1.14305 1.22425 1.01399 0.85898 1.03655 1.27634 0.97874 1.05875 1.06179 1.83317 1.08224 0.98643 1.56904 1.21006 0.94478 0.87204 1.04976 1.22376 0.94558 0.96026 1.01365 1.21122 0.89344 0.95344 1.02657 1.22206 0.97080 0.81142 1.00458 0.98962 0.95097 0.94393 0.94118 0.90776 0.91879 0.86400 0.92638 0.87510 0.88790 0.87618 0.87482 0.89469 0.86513 0.90185 0.88918 0.93420 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.59 7.97 127.77 1.02 9.61 16 2 N -0.61 -30.84 2.81 -702.33 -1.98 -32.82 16 3 C -0.27 -15.28 9.59 84.03 0.81 -14.47 16 4 H 0.06 3.63 7.82 -2.91 -0.02 3.61 16 5 C -0.05 -2.91 5.06 84.86 0.43 -2.48 16 6 N -0.94 -56.70 10.74 21.65 0.23 -56.47 16 7 Si 0.97 46.69 29.57 68.60 2.03 48.72 16 8 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 9 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 C 0.17 6.93 2.75 45.07 0.12 7.05 16 12 H 0.04 1.90 7.87 -2.39 -0.02 1.88 16 13 C -0.12 -3.70 5.11 30.62 0.16 -3.54 16 14 C -0.12 -2.68 6.08 30.67 0.19 -2.49 16 15 C 0.09 1.98 5.94 86.36 0.51 2.50 16 16 N -0.59 -19.74 2.97 -822.98 -2.45 -22.19 16 17 C 0.59 22.63 7.67 86.61 0.66 23.29 16 18 O -0.56 -27.59 16.53 -4.10 -0.07 -27.66 16 19 C -0.03 -0.89 6.40 87.37 0.56 -0.33 16 20 N -0.44 -14.66 10.63 -175.38 -1.87 -16.52 16 21 C 0.00 0.02 7.62 42.29 0.32 0.35 16 22 C -0.25 -4.37 7.17 25.26 0.18 -4.19 16 23 S 0.27 5.13 20.30 -56.49 -1.15 3.98 16 24 C -0.04 -0.28 6.80 30.66 0.21 -0.07 16 25 C -0.10 -0.65 7.10 31.37 0.22 -0.43 16 26 C -0.05 -0.65 6.80 30.89 0.21 -0.44 16 27 C 0.12 4.71 5.78 86.36 0.50 5.21 16 28 H -0.01 -0.43 7.79 -2.39 -0.02 -0.45 16 29 H 0.03 1.65 6.77 -2.38 -0.02 1.63 16 30 H 0.04 1.52 6.46 -2.39 -0.02 1.50 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.07 2.10 6.73 -2.39 -0.02 2.09 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.79 4.20 -13.40 -0.06 1.74 16 38 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 2.39 7.03 -2.39 -0.02 2.38 16 45 H 0.08 2.94 7.51 -2.39 -0.02 2.92 16 Total: -1.00 -81.24 364.64 1.82 -79.43 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.96 Total: 3.97 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 6.10 Total: 19.55 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -6.06 Total: -127.99 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.07 Total: -27.66 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.15 Total: 3.98 kcal Total: -81.24 1.82 -79.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027492318.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.629 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds