Wall clock time and date at job start Tue Mar 31 2020 18:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00159 * 2 1 4 4 H 1.07997 * 120.00252 * 214.49258 * 3 2 1 5 5 C 1.38812 * 119.99883 * 34.49025 * 3 2 1 6 6 N 1.31620 * 120.00234 * 5.22742 * 5 3 2 7 7 Si 1.86798 * 120.00064 * 185.23074 * 5 3 2 8 8 H 1.48507 * 109.47051 * 89.99949 * 7 5 3 9 9 H 1.48502 * 109.47108 * 209.99572 * 7 5 3 10 10 H 1.48493 * 109.47000 * 330.00036 * 7 5 3 11 11 C 1.46496 * 119.99857 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.49737 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.50040 * 59.99869 * 11 2 1 14 14 C 1.53040 * 109.54050 * 178.68467 * 13 11 2 15 15 C 1.53193 * 109.31235 * 61.36044 * 14 13 11 16 16 N 1.46919 * 108.77818 * 305.36583 * 15 14 13 17 17 C 1.34776 * 120.63286 * 233.58562 * 16 15 14 18 18 O 1.21629 * 119.99881 * 184.76893 * 17 16 15 19 19 C 1.47261 * 119.99778 * 4.76687 * 17 16 15 20 20 N 1.33563 * 123.14552 * 353.76572 * 19 17 16 21 21 C 1.28649 * 115.76921 * 179.97438 * 20 19 17 22 22 S 1.70771 * 110.55798 * 0.02562 * 21 20 19 23 23 C 1.35214 * 123.14263 * 173.47258 * 19 17 16 24 24 C 1.50701 * 125.58119 * 359.97438 * 23 19 17 25 25 C 1.53004 * 117.49497 * 188.74567 * 24 23 19 26 26 C 1.53008 * 117.49292 * 120.09033 * 24 23 19 27 27 C 1.46927 * 118.73753 * 53.61313 * 16 15 14 28 28 H 1.08999 * 109.46622 * 265.02226 * 1 2 3 29 29 H 1.08997 * 109.46963 * 25.02046 * 1 2 3 30 30 H 1.08997 * 109.47231 * 145.02432 * 1 2 3 31 31 H 0.96994 * 120.00633 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.45718 * 298.70359 * 13 11 2 33 33 H 1.08999 * 109.45975 * 58.65887 * 13 11 2 34 34 H 1.08998 * 109.49674 * 181.31492 * 14 13 11 35 35 H 1.09002 * 109.49686 * 301.37812 * 14 13 11 36 36 H 1.09006 * 109.58496 * 65.15859 * 15 14 13 37 37 H 1.08998 * 109.58359 * 185.43459 * 15 14 13 38 38 H 1.07995 * 124.71941 * 179.97438 * 21 20 19 39 39 H 1.08997 * 115.55639 * 334.42306 * 24 23 19 40 40 H 1.08995 * 117.49992 * 0.02562 * 25 24 23 41 41 H 1.08995 * 117.49245 * 145.02754 * 25 24 23 42 42 H 1.09002 * 117.49472 * 214.97844 * 26 24 23 43 43 H 1.09000 * 117.49762 * 359.97438 * 26 24 23 44 44 H 1.09007 * 109.58784 * 186.60582 * 27 16 15 45 45 H 1.08998 * 109.59449 * 66.17269 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0873 1.2681 -0.5296 5 6 1.6387 2.2824 0.6807 6 7 0.5507 2.1554 1.4105 7 14 2.4950 3.9382 0.5611 8 1 1.9374 4.7023 -0.5837 9 1 2.2778 4.6997 1.8174 10 1 3.9506 3.7288 0.3545 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2503 14 6 2.6175 -3.3823 -1.2685 15 6 2.2496 -4.2123 -0.0346 16 7 2.4654 -3.3947 1.1669 17 6 3.2358 -3.8469 2.1760 18 8 3.3370 -3.1999 3.2010 19 6 3.9551 -5.1245 2.0377 20 7 3.7960 -5.9428 0.9942 21 6 4.4958 -7.0221 1.0181 22 16 5.4528 -7.0852 2.4310 23 6 4.8427 -5.5759 2.9524 24 6 5.2291 -4.8658 4.2242 25 6 6.3992 -5.4393 5.0260 26 6 4.9674 -5.5912 5.5457 27 6 1.8248 -2.0749 1.2477 28 1 -0.3632 -0.0892 1.0238 29 1 -0.3633 0.9312 -0.4346 30 1 -0.3633 -0.8420 -0.5891 31 1 0.1938 2.9214 1.8865 32 1 0.7605 -2.2904 -1.2387 33 1 2.0697 -1.4896 -2.1399 34 1 2.3714 -3.9426 -2.1705 35 1 3.6854 -3.1642 -1.2556 36 1 1.2020 -4.5080 -0.0921 37 1 2.8784 -5.1016 0.0083 38 1 4.4795 -7.7828 0.2517 39 1 5.1099 -3.7824 4.2127 40 1 6.8898 -6.3299 4.6334 41 1 7.0495 -4.7332 5.5421 42 1 4.6765 -4.9849 6.4036 43 1 4.5154 -6.5818 5.4952 44 1 2.1751 -1.5525 2.1380 45 1 0.7426 -2.1961 1.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027574289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:57 Heat of formation + Delta-G solvation = 78.653825 kcal Electronic energy + Delta-G solvation = -27299.337214 eV Core-core repulsion = 23639.047037 eV Total energy + Delta-G solvation = -3660.290177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87191 -38.81868 -37.59328 -37.05031 -34.90117 -32.20382 -31.14445 -30.68118 -28.91406 -26.48930 -25.89692 -24.90561 -23.40265 -22.70878 -22.36815 -21.88210 -21.33732 -19.29373 -18.63033 -18.15550 -16.72822 -16.53432 -16.10086 -15.60301 -15.27688 -14.89155 -14.71783 -14.42510 -14.11526 -13.87795 -13.71754 -13.52093 -13.17228 -12.54802 -12.53470 -12.33921 -12.17706 -12.10180 -11.82865 -11.75359 -11.29111 -11.19923 -10.93985 -10.80598 -10.73795 -10.64406 -10.33891 -10.27353 -10.09444 -9.91349 -9.68208 -9.61833 -9.58740 -9.04444 -8.93793 -8.48242 -8.13279 -6.53619 -5.72090 -3.27017 0.29786 0.93510 1.35133 1.87536 3.32210 3.41306 3.46403 3.47107 3.48867 3.70920 3.91601 4.26836 4.51987 4.57243 4.75430 4.79438 4.97851 5.26574 5.31007 5.35635 5.40157 5.45900 5.50341 5.61144 5.64836 5.78453 5.83310 5.88445 6.06102 6.07764 6.18226 6.31187 6.39078 6.48921 6.58441 6.65949 6.85155 6.95133 7.05245 7.15357 7.19686 7.37921 7.71531 7.84335 7.85693 8.45874 8.53332 9.28861 9.87999 10.44222 11.33598 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003275 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.500455 B = 8548.461363 C = 9666.990253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.588 5.588 3 C -0.262 4.262 4 H 0.063 0.937 5 C 0.013 3.987 6 N -0.900 5.900 7 Si 0.903 3.097 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.170 3.830 12 H 0.063 0.937 13 C -0.134 4.134 14 C -0.126 4.126 15 C 0.051 3.949 16 N -0.583 5.583 17 C 0.584 3.416 18 O -0.534 6.534 19 C 0.011 3.989 20 N -0.425 5.425 21 C -0.012 4.012 22 S 0.199 5.801 23 C -0.149 4.149 24 C -0.085 4.085 25 C -0.178 4.178 26 C -0.158 4.158 27 C 0.099 3.901 28 H 0.019 0.981 29 H 0.048 0.952 30 H -0.003 1.003 31 H 0.254 0.746 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.159 0.841 38 H 0.206 0.794 39 H 0.149 0.851 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -23.318 1.337 25.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.310 5.310 3 C -0.392 4.392 4 H 0.081 0.919 5 C -0.187 4.187 6 N -0.543 5.543 7 Si 0.733 3.267 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.061 3.939 12 H 0.081 0.919 13 C -0.174 4.174 14 C -0.164 4.164 15 C -0.073 4.073 16 N -0.314 5.314 17 C 0.369 3.631 18 O -0.412 6.412 19 C -0.123 4.123 20 N -0.139 5.139 21 C -0.310 4.310 22 S 0.456 5.544 23 C -0.272 4.272 24 C -0.105 4.105 25 C -0.216 4.216 26 C -0.196 4.196 27 C -0.025 4.025 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.174 0.826 38 H 0.222 0.778 39 H 0.166 0.834 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.916 -23.444 1.857 25.522 hybrid contribution -0.382 1.794 -0.227 1.849 sum 9.534 -21.649 1.629 23.712 Atomic orbital electron populations 1.20745 0.83165 0.97036 0.97554 1.43793 1.01504 1.00003 1.85690 1.19130 1.05898 0.87951 1.26230 0.91941 1.25328 0.97838 0.99251 0.96248 1.69998 1.22467 1.29684 1.32189 0.86286 0.79454 0.83973 0.76993 1.21389 1.21583 1.20346 1.20673 0.96388 0.86229 0.90654 0.91897 1.22088 0.99658 0.95385 1.00246 1.21839 1.00410 0.96899 0.97291 1.23293 1.03110 0.97511 0.83350 1.48096 1.47031 1.18790 1.17493 1.17070 0.79247 0.83044 0.83737 1.90763 1.64187 1.57825 1.28425 1.20527 1.01585 0.98400 0.91751 1.66588 1.22003 1.02938 1.22383 1.28626 0.99182 1.00330 1.02871 1.82728 1.41163 1.14665 1.15880 1.24759 1.01307 0.99695 1.01482 1.20681 1.02820 1.00702 0.86296 1.23174 0.91417 1.03115 1.03901 1.23073 0.98254 1.01736 0.96548 1.22554 0.96760 0.80783 1.02365 0.96225 0.93280 0.98455 0.93605 0.92474 0.92132 0.91733 0.92355 0.92776 0.82603 0.77773 0.83391 0.88775 0.87568 0.87591 0.88698 0.89134 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 7.99 59.85 0.48 4.49 16 2 N -0.59 -15.23 2.78 -173.34 -0.48 -15.71 16 3 C -0.26 -7.43 9.45 -15.06 -0.14 -7.57 16 4 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.01 0.38 5.17 -17.43 -0.09 0.29 16 6 N -0.90 -26.82 11.12 55.49 0.62 -26.21 16 7 Si 0.90 22.31 29.56 -169.99 -5.02 17.29 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.17 3.73 2.75 -67.81 -0.19 3.55 16 12 H 0.06 1.47 7.89 -51.93 -0.41 1.06 16 13 C -0.13 -2.45 5.10 -26.69 -0.14 -2.59 16 14 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 15 C 0.05 0.77 6.28 -3.71 -0.02 0.74 16 16 N -0.58 -10.67 2.97 -174.09 -0.52 -11.19 16 17 C 0.58 10.75 7.66 -12.59 -0.10 10.66 16 18 O -0.53 -11.21 13.67 5.25 0.07 -11.14 16 19 C 0.01 0.16 6.56 -84.52 -0.55 -0.40 16 20 N -0.43 -5.15 6.63 -12.36 -0.08 -5.23 16 21 C -0.01 -0.10 12.17 51.43 0.63 0.53 16 22 S 0.20 1.54 21.77 -107.50 -2.34 -0.80 16 23 C -0.15 -1.82 6.04 -35.38 -0.21 -2.03 16 24 C -0.08 -1.02 5.34 -91.76 -0.49 -1.51 16 25 C -0.18 -1.54 10.03 -26.69 -0.27 -1.81 16 26 C -0.16 -1.52 10.24 -26.69 -0.27 -1.80 16 27 C 0.10 2.11 5.78 -3.71 -0.02 2.09 16 28 H 0.02 0.53 7.73 -51.93 -0.40 0.12 16 29 H 0.05 1.32 7.26 -51.93 -0.38 0.94 16 30 H 0.00 -0.06 6.48 -51.93 -0.34 -0.40 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.06 1.04 6.75 -51.93 -0.35 0.69 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.16 2.16 3.45 -95.48 -0.33 1.84 16 38 H 0.21 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.15 2.22 6.31 -51.93 -0.33 1.89 16 40 H 0.09 0.68 7.28 -51.93 -0.38 0.30 16 41 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 2.22 7.03 -51.93 -0.37 1.86 16 45 H 0.06 1.32 7.51 -51.93 -0.39 0.93 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -32.98 365.36 -10.40 -43.38 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.59 Total: 1.52 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.55 Total: 2.58 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.46 Total: -58.34 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.34 Total: -0.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.98 -10.40 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027574289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.032 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds