Wall clock time and date at job start Tue Mar 31 2020 18:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 120.00159 * 2 1 4 4 H 1.07997 * 120.00252 * 214.49258 * 3 2 1 5 5 C 1.38812 * 119.99883 * 34.49025 * 3 2 1 6 6 N 1.31620 * 120.00234 * 5.22742 * 5 3 2 7 7 Si 1.86798 * 120.00064 * 185.23074 * 5 3 2 8 8 H 1.48507 * 109.47051 * 89.99949 * 7 5 3 9 9 H 1.48502 * 109.47108 * 209.99572 * 7 5 3 10 10 H 1.48493 * 109.47000 * 330.00036 * 7 5 3 11 11 C 1.46496 * 119.99857 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.49737 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.50040 * 59.99869 * 11 2 1 14 14 C 1.53040 * 109.54050 * 178.68467 * 13 11 2 15 15 C 1.53193 * 109.31235 * 61.36044 * 14 13 11 16 16 N 1.46919 * 108.77818 * 305.36583 * 15 14 13 17 17 C 1.34776 * 120.63286 * 233.58562 * 16 15 14 18 18 O 1.21629 * 119.99881 * 184.76893 * 17 16 15 19 19 C 1.47261 * 119.99778 * 4.76687 * 17 16 15 20 20 N 1.33563 * 123.14552 * 353.76572 * 19 17 16 21 21 C 1.28649 * 115.76921 * 179.97438 * 20 19 17 22 22 S 1.70771 * 110.55798 * 0.02562 * 21 20 19 23 23 C 1.35214 * 123.14263 * 173.47258 * 19 17 16 24 24 C 1.50701 * 125.58119 * 359.97438 * 23 19 17 25 25 C 1.53004 * 117.49497 * 188.74567 * 24 23 19 26 26 C 1.53008 * 117.49292 * 120.09033 * 24 23 19 27 27 C 1.46927 * 118.73753 * 53.61313 * 16 15 14 28 28 H 1.08999 * 109.46622 * 265.02226 * 1 2 3 29 29 H 1.08997 * 109.46963 * 25.02046 * 1 2 3 30 30 H 1.08997 * 109.47231 * 145.02432 * 1 2 3 31 31 H 0.96994 * 120.00633 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.45718 * 298.70359 * 13 11 2 33 33 H 1.08999 * 109.45975 * 58.65887 * 13 11 2 34 34 H 1.08998 * 109.49674 * 181.31492 * 14 13 11 35 35 H 1.09002 * 109.49686 * 301.37812 * 14 13 11 36 36 H 1.09006 * 109.58496 * 65.15859 * 15 14 13 37 37 H 1.08998 * 109.58359 * 185.43459 * 15 14 13 38 38 H 1.07995 * 124.71941 * 179.97438 * 21 20 19 39 39 H 1.08997 * 115.55639 * 334.42306 * 24 23 19 40 40 H 1.08995 * 117.49992 * 0.02562 * 25 24 23 41 41 H 1.08995 * 117.49245 * 145.02754 * 25 24 23 42 42 H 1.09002 * 117.49472 * 214.97844 * 26 24 23 43 43 H 1.09000 * 117.49762 * 359.97438 * 26 24 23 44 44 H 1.09007 * 109.58784 * 186.60582 * 27 16 15 45 45 H 1.08998 * 109.59449 * 66.17269 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0873 1.2681 -0.5296 5 6 1.6387 2.2824 0.6807 6 7 0.5507 2.1554 1.4105 7 14 2.4950 3.9382 0.5611 8 1 1.9374 4.7023 -0.5837 9 1 2.2778 4.6997 1.8174 10 1 3.9506 3.7288 0.3545 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2503 14 6 2.6175 -3.3823 -1.2685 15 6 2.2496 -4.2123 -0.0346 16 7 2.4654 -3.3947 1.1669 17 6 3.2358 -3.8469 2.1760 18 8 3.3370 -3.1999 3.2010 19 6 3.9551 -5.1245 2.0377 20 7 3.7960 -5.9428 0.9942 21 6 4.4958 -7.0221 1.0181 22 16 5.4528 -7.0852 2.4310 23 6 4.8427 -5.5759 2.9524 24 6 5.2291 -4.8658 4.2242 25 6 6.3992 -5.4393 5.0260 26 6 4.9674 -5.5912 5.5457 27 6 1.8248 -2.0749 1.2477 28 1 -0.3632 -0.0892 1.0238 29 1 -0.3633 0.9312 -0.4346 30 1 -0.3633 -0.8420 -0.5891 31 1 0.1938 2.9214 1.8865 32 1 0.7605 -2.2904 -1.2387 33 1 2.0697 -1.4896 -2.1399 34 1 2.3714 -3.9426 -2.1705 35 1 3.6854 -3.1642 -1.2556 36 1 1.2020 -4.5080 -0.0921 37 1 2.8784 -5.1016 0.0083 38 1 4.4795 -7.7828 0.2517 39 1 5.1099 -3.7824 4.2127 40 1 6.8898 -6.3299 4.6334 41 1 7.0495 -4.7332 5.5421 42 1 4.6765 -4.9849 6.4036 43 1 4.5154 -6.5818 5.4952 44 1 2.1751 -1.5525 2.1380 45 1 0.7426 -2.1961 1.2946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027574289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:55 Heat of formation + Delta-G solvation = 58.471386 kcal Electronic energy + Delta-G solvation = -27300.212390 eV Core-core repulsion = 23639.047037 eV Total energy + Delta-G solvation = -3661.165353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.97259 -40.10253 -38.83224 -38.18905 -36.70727 -33.97506 -32.84714 -31.60518 -30.65155 -28.06244 -27.58766 -26.17023 -25.17846 -23.53572 -23.28786 -22.98245 -22.82849 -20.78970 -19.91711 -19.18875 -18.75580 -17.59645 -17.35616 -16.97256 -16.63490 -16.42685 -15.92952 -15.56794 -15.43907 -15.28905 -15.04219 -14.93066 -14.72955 -14.41408 -13.92190 -13.89602 -13.52160 -13.15184 -13.08472 -12.92016 -12.83984 -12.56661 -12.50610 -12.30364 -12.20730 -12.16409 -12.09708 -11.91454 -11.76212 -11.55971 -11.40105 -10.96041 -10.66321 -10.27633 -9.98350 -9.95150 -9.58205 -8.64941 -7.91050 -5.50063 -0.52185 0.20168 0.59323 0.90528 1.41188 1.43162 1.52407 2.00276 2.23899 2.45985 2.87699 3.04945 3.24896 3.39708 3.61654 3.72425 3.86374 3.99728 4.00622 4.11705 4.15371 4.24656 4.34338 4.34890 4.54774 4.58071 4.65463 4.68890 4.76896 4.78526 4.91516 4.94305 5.05210 5.11116 5.13092 5.14488 5.18685 5.28983 5.41197 5.50225 5.58201 5.59709 5.78448 6.29023 6.34551 6.53914 7.07976 7.12011 7.77998 8.28735 9.12678 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015634 B = 0.003275 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.500455 B = 8548.461363 C = 9666.990253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.605 5.605 3 C -0.277 4.277 4 H 0.061 0.939 5 C -0.040 4.040 6 N -0.932 5.932 7 Si 0.971 3.029 8 H -0.278 1.278 9 H -0.292 1.292 10 H -0.270 1.270 11 C 0.171 3.829 12 H 0.041 0.959 13 C -0.123 4.123 14 C -0.115 4.115 15 C 0.048 3.952 16 N -0.588 5.588 17 C 0.573 3.427 18 O -0.578 6.578 19 C -0.020 4.020 20 N -0.451 5.451 21 C -0.003 4.003 22 S 0.299 5.701 23 C -0.168 4.168 24 C -0.120 4.120 25 C -0.151 4.151 26 C -0.156 4.156 27 C 0.116 3.884 28 H -0.008 1.008 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.251 0.749 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.182 0.818 38 H 0.253 0.747 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 -27.231 -0.134 29.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.328 5.328 3 C -0.408 4.408 4 H 0.079 0.921 5 C -0.237 4.237 6 N -0.576 5.576 7 Si 0.798 3.202 8 H -0.204 1.204 9 H -0.218 1.218 10 H -0.195 1.195 11 C 0.063 3.937 12 H 0.059 0.941 13 C -0.162 4.162 14 C -0.154 4.154 15 C -0.074 4.074 16 N -0.319 5.319 17 C 0.360 3.640 18 O -0.459 6.459 19 C -0.153 4.153 20 N -0.166 5.166 21 C -0.300 4.300 22 S 0.557 5.443 23 C -0.292 4.292 24 C -0.141 4.141 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.009 4.009 28 H 0.011 0.989 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.197 0.803 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.003 -27.411 0.354 29.926 hybrid contribution -0.917 2.844 0.295 3.003 sum 11.086 -24.567 0.649 26.960 Atomic orbital electron populations 1.20478 0.83003 0.97040 0.96233 1.44010 1.01871 1.00834 1.86063 1.19434 1.05942 0.89286 1.26110 0.92122 1.26110 0.98592 1.02873 0.96097 1.70166 1.23853 1.30435 1.33194 0.85237 0.78651 0.79469 0.76884 1.20383 1.21823 1.19522 1.20751 0.94694 0.85446 0.92844 0.94113 1.21935 1.00370 0.96464 0.97413 1.21811 0.99444 0.95223 0.98899 1.23651 1.04152 0.97823 0.81761 1.48154 1.47059 1.17694 1.18984 1.17776 0.78846 0.84444 0.82890 1.90732 1.65474 1.59617 1.30035 1.19960 1.03303 0.97767 0.94255 1.66264 1.24017 1.04202 1.22075 1.29365 0.97272 0.99472 1.03902 1.82358 1.38469 1.09785 1.13682 1.25005 1.00947 1.02347 1.00901 1.20516 1.06615 0.99012 0.87958 1.23295 0.90629 1.03369 1.01511 1.23170 0.99402 1.01860 0.94922 1.21994 0.96215 0.82682 1.00035 0.98945 0.95604 0.95135 0.93969 0.92124 0.92408 0.87861 0.92829 0.92161 0.80347 0.73163 0.87760 0.86356 0.86828 0.88029 0.87197 0.93727 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 7.99 127.77 1.02 10.30 16 2 N -0.61 -32.77 2.78 -702.34 -1.95 -34.72 16 3 C -0.28 -16.35 9.45 84.03 0.79 -15.55 16 4 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 5 C -0.04 -2.37 5.17 84.86 0.44 -1.93 16 6 N -0.93 -58.01 11.12 21.65 0.24 -57.77 16 7 Si 0.97 47.19 29.56 68.60 2.03 49.22 16 8 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 9 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 11 C 0.17 7.86 2.75 45.07 0.12 7.98 16 12 H 0.04 2.02 7.89 -2.39 -0.02 2.00 16 13 C -0.12 -4.42 5.10 30.62 0.16 -4.27 16 14 C -0.12 -3.24 6.08 30.67 0.19 -3.06 16 15 C 0.05 1.39 6.28 86.36 0.54 1.93 16 16 N -0.59 -22.49 2.97 -822.95 -2.45 -24.93 16 17 C 0.57 22.40 7.66 86.62 0.66 23.06 16 18 O -0.58 -26.73 13.67 -4.12 -0.06 -26.78 16 19 C -0.02 -0.58 6.56 40.56 0.27 -0.31 16 20 N -0.45 -9.79 6.63 -193.03 -1.28 -11.07 16 21 C 0.00 -0.03 12.17 130.71 1.59 1.56 16 22 S 0.30 3.32 21.77 -56.49 -1.23 2.09 16 23 C -0.17 -3.91 6.04 24.99 0.15 -3.76 16 24 C -0.12 -2.97 5.34 -11.54 -0.06 -3.03 16 25 C -0.15 -2.33 10.03 30.62 0.31 -2.02 16 26 C -0.16 -2.88 10.24 30.62 0.31 -2.57 16 27 C 0.12 5.31 5.78 86.36 0.50 5.81 16 28 H -0.01 -0.45 7.73 -2.39 -0.02 -0.46 16 29 H 0.03 1.43 7.26 -2.39 -0.02 1.41 16 30 H 0.03 1.36 6.48 -2.39 -0.02 1.35 16 31 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.06 2.15 6.75 -2.39 -0.02 2.13 16 33 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.18 4.57 3.45 -88.38 -0.30 4.27 16 38 H 0.25 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.10 3.50 6.31 -2.39 -0.02 3.48 16 40 H 0.12 1.23 7.28 -2.39 -0.02 1.21 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 2.42 7.03 -2.38 -0.02 2.40 16 45 H 0.05 2.49 7.51 -2.39 -0.02 2.47 16 Total: -1.00 -79.58 365.36 3.01 -76.57 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.71 Total: 13.26 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.99 Total: 14.14 kcal Atomic # 7 Polarization: -123.06 SS G_CDS: -5.43 Total: -128.49 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.78 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.23 Total: 2.09 kcal Total: -79.58 3.01 -76.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027574289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.039 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds