Wall clock time and date at job start Tue Mar 31 2020 18:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.36940 * 120.00062 * 2 1 4 4 H 1.08003 * 120.00154 * 159.86230 * 3 2 1 5 5 C 1.38807 * 120.00217 * 339.86758 * 3 2 1 6 6 N 1.31621 * 119.99685 * 345.42879 * 5 3 2 7 7 Si 1.86795 * 120.00400 * 165.42942 * 5 3 2 8 8 H 1.48503 * 109.47077 * 84.98139 * 7 5 3 9 9 H 1.48502 * 109.47422 * 204.98400 * 7 5 3 10 10 H 1.48496 * 109.47220 * 324.98648 * 7 5 3 11 11 C 1.46502 * 120.00233 * 180.27882 * 2 1 3 12 12 H 1.08996 * 109.50197 * 179.66097 * 11 2 1 13 13 C 1.53048 * 109.49423 * 299.72257 * 11 2 1 14 14 C 1.53045 * 109.53648 * 181.31488 * 13 11 2 15 15 C 1.53197 * 109.31031 * 298.63834 * 14 13 11 16 16 N 1.46923 * 108.78124 * 54.63207 * 15 14 13 17 17 C 1.34774 * 120.62743 * 126.36436 * 16 15 14 18 18 O 1.21633 * 119.99672 * 187.04124 * 17 16 15 19 19 C 1.47267 * 120.00395 * 7.04761 * 17 16 15 20 20 N 1.33558 * 123.13812 * 6.86594 * 19 17 16 21 21 C 1.28652 * 115.76881 * 180.02562 * 20 19 17 22 22 S 1.70770 * 110.55290 * 359.97438 * 21 20 19 23 23 C 1.35203 * 123.14186 * 186.56812 * 19 17 16 24 24 C 1.50699 * 125.58823 * 0.02562 * 23 19 17 25 25 C 1.52999 * 117.49655 * 188.61849 * 24 23 19 26 26 C 1.52997 * 117.50621 * 119.99399 * 24 23 19 27 27 C 1.46925 * 118.73747 * 306.39550 * 16 15 14 28 28 H 1.08999 * 109.47725 * 85.82500 * 1 2 3 29 29 H 1.09001 * 109.47042 * 205.83138 * 1 2 3 30 30 H 1.09006 * 109.47175 * 325.82617 * 1 2 3 31 31 H 0.97007 * 119.99917 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.45922 * 301.33651 * 13 11 2 33 33 H 1.09005 * 109.45986 * 61.29635 * 13 11 2 34 34 H 1.09000 * 109.49741 * 58.58299 * 14 13 11 35 35 H 1.08996 * 109.49669 * 178.68615 * 14 13 11 36 36 H 1.09003 * 109.58323 * 174.42419 * 15 14 13 37 37 H 1.09001 * 109.58449 * 294.70520 * 15 14 13 38 38 H 1.07996 * 124.72411 * 179.97438 * 21 20 19 39 39 H 1.09007 * 115.54442 * 334.31651 * 24 23 19 40 40 H 1.08993 * 117.50472 * 359.97438 * 25 24 23 41 41 H 1.09009 * 117.49902 * 145.01700 * 25 24 23 42 42 H 1.08995 * 117.49872 * 214.98015 * 26 24 23 43 43 H 1.09009 * 117.49482 * 359.97438 * 26 24 23 44 44 H 1.08999 * 109.58858 * 293.81658 * 27 16 15 45 45 H 1.09000 * 109.58567 * 173.38922 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1801 1.2145 0.3220 5 6 1.5192 2.3513 -0.4137 6 7 0.3796 2.2860 -1.0690 7 14 2.2882 4.0123 -0.0406 8 1 3.2823 4.3450 -1.0925 9 1 1.2293 5.0531 -0.0132 10 1 2.9644 3.9592 1.2803 11 6 2.1975 -1.2687 -0.0062 12 1 3.2691 -1.0700 -0.0113 13 6 1.8334 -2.0748 1.2429 14 6 2.6228 -3.3858 1.2540 15 6 2.2497 -4.2123 0.0192 16 7 2.4603 -3.3913 -1.1809 17 6 3.2273 -3.8403 -2.1941 18 8 3.4991 -3.1042 -3.1234 19 6 3.7361 -5.2222 -2.1761 20 7 3.3707 -6.1229 -1.2602 21 6 3.9031 -7.2882 -1.3781 22 16 4.9558 -7.3331 -2.7220 23 6 4.6123 -5.6992 -3.0887 24 6 5.1939 -4.9174 -4.2383 25 6 6.0103 -5.6897 -5.2765 26 6 6.7148 -4.7590 -4.2874 27 6 1.8195 -2.0713 -1.2551 28 1 -0.3634 0.0748 -1.0249 29 1 -0.3633 -0.9250 0.4478 30 1 -0.3634 0.8503 0.5773 31 1 -0.0608 3.1005 -1.3585 32 1 2.0787 -1.4956 2.1331 33 1 0.7656 -2.2939 1.2352 34 1 3.6906 -3.1677 1.2366 35 1 2.3806 -3.9487 2.1554 36 1 2.8801 -5.1003 -0.0302 37 1 1.2031 -4.5102 0.0816 38 1 3.7109 -8.1218 -0.7190 39 1 4.5891 -4.0825 -4.5926 40 1 6.1271 -6.7631 -5.1278 41 1 5.9428 -5.3630 -6.3143 42 1 7.1108 -3.8201 -4.6743 43 1 7.2949 -5.2200 -3.4878 44 1 0.7371 -2.1924 -1.2978 45 1 2.1660 -1.5464 -2.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027574292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:01 Heat of formation + Delta-G solvation = 80.390178 kcal Electronic energy + Delta-G solvation = -27253.173637 eV Core-core repulsion = 23592.958754 eV Total energy + Delta-G solvation = -3660.214883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86638 -38.86536 -37.60294 -37.08729 -34.96742 -32.24641 -31.17362 -30.67632 -28.86996 -26.50000 -25.94690 -24.90908 -23.41944 -22.71378 -22.37300 -21.88448 -21.36807 -19.32506 -18.62939 -18.18073 -16.73240 -16.52929 -16.13064 -15.55063 -15.36249 -15.00190 -14.65741 -14.41403 -14.20992 -13.81902 -13.75195 -13.44144 -13.24081 -12.55203 -12.54268 -12.30729 -12.22052 -12.18641 -11.83951 -11.77838 -11.31981 -11.15278 -10.93318 -10.81454 -10.72667 -10.62147 -10.34529 -10.27670 -10.12328 -9.79775 -9.73050 -9.68197 -9.58015 -9.11271 -9.04642 -8.51394 -8.16985 -6.72335 -5.67536 -3.10611 0.29063 0.93954 1.35912 1.86856 3.31476 3.40431 3.43253 3.48596 3.51011 3.69307 3.92011 4.26244 4.54082 4.56844 4.74338 4.77992 4.97581 5.24005 5.29857 5.34357 5.37583 5.45106 5.49421 5.56886 5.63909 5.73833 5.82408 5.83813 6.01176 6.07018 6.13507 6.24465 6.34061 6.40332 6.51476 6.59781 6.79368 6.89750 7.01499 7.09030 7.17710 7.44456 7.76037 7.78638 7.86573 8.40574 8.46017 9.28556 9.91956 10.39980 11.37621 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003153 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.708989 B = 8879.479991 C = 9953.595544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.253 4.253 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.075 3.925 16 N -0.585 5.585 17 C 0.587 3.413 18 O -0.534 6.534 19 C 0.008 3.992 20 N -0.427 5.427 21 C -0.013 4.013 22 S 0.195 5.805 23 C -0.148 4.148 24 C -0.089 4.089 25 C -0.177 4.177 26 C -0.160 4.160 27 C 0.097 3.903 28 H 0.027 0.973 29 H -0.001 1.001 30 H 0.045 0.955 31 H 0.252 0.748 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.058 0.942 38 H 0.205 0.795 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.272 -23.963 -2.097 25.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.207 1.207 11 C 0.061 3.939 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.048 4.048 16 N -0.316 5.316 17 C 0.371 3.629 18 O -0.411 6.411 19 C -0.126 4.126 20 N -0.141 5.141 21 C -0.311 4.311 22 S 0.451 5.549 23 C -0.271 4.271 24 C -0.110 4.110 25 C -0.215 4.215 26 C -0.198 4.198 27 C -0.026 4.026 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.477 -24.075 -2.574 26.001 hybrid contribution -0.281 1.768 0.388 1.831 sum 9.196 -22.308 -2.186 24.228 Atomic orbital electron populations 1.20784 0.82545 0.95707 0.99210 1.43981 1.01894 1.00050 1.85443 1.19227 0.96836 0.84805 1.37429 0.91357 1.24962 0.97822 0.98333 0.98557 1.70093 1.18384 1.26745 1.39997 0.86280 0.78168 0.83946 0.78172 1.21376 1.21621 1.20682 1.20610 0.96382 0.86109 0.90819 0.91820 1.22098 0.99670 0.95214 1.00321 1.21912 1.00529 0.97102 0.97316 1.22786 1.02866 0.95828 0.83284 1.48077 1.47569 1.18809 1.17182 1.17071 0.78776 0.84140 0.82865 1.90741 1.58740 1.56046 1.35616 1.20488 1.01276 0.96554 0.94261 1.66943 1.23605 1.00426 1.23120 1.28552 1.00494 0.99546 1.02540 1.82733 1.42183 1.06084 1.23878 1.24789 1.02051 0.98704 1.01584 1.20790 0.94607 1.01537 0.94029 1.23147 1.04019 0.97799 0.96519 1.23079 0.92922 1.01968 1.01808 1.22593 0.96613 0.80920 1.02490 0.95500 0.98236 0.93576 0.93777 0.91938 0.92373 0.92277 0.91525 0.84649 0.92326 0.77835 0.82992 0.88792 0.87584 0.87553 0.88671 0.91969 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 7.90 59.84 0.47 4.54 16 2 N -0.59 -15.22 2.82 -173.35 -0.49 -15.71 16 3 C -0.25 -7.17 9.62 -15.06 -0.14 -7.32 16 4 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 5 C 0.00 0.04 5.07 -17.43 -0.09 -0.05 16 6 N -0.91 -27.01 10.64 55.49 0.59 -26.42 16 7 Si 0.90 22.42 29.58 -169.99 -5.03 17.39 16 8 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.17 3.68 2.74 -67.81 -0.19 3.49 16 12 H 0.06 1.46 7.85 -51.93 -0.41 1.06 16 13 C -0.13 -2.40 5.13 -26.68 -0.14 -2.53 16 14 C -0.13 -1.90 6.08 -26.61 -0.16 -2.06 16 15 C 0.08 1.11 6.02 -3.71 -0.02 1.09 16 16 N -0.59 -10.44 2.97 -174.09 -0.52 -10.96 16 17 C 0.59 10.59 7.65 -12.59 -0.10 10.50 16 18 O -0.53 -11.00 13.58 5.25 0.07 -10.93 16 19 C 0.01 0.11 6.49 -84.53 -0.55 -0.44 16 20 N -0.43 -5.15 6.75 -12.36 -0.08 -5.23 16 21 C -0.01 -0.11 12.17 51.43 0.63 0.52 16 22 S 0.19 1.51 21.77 -107.50 -2.34 -0.83 16 23 C -0.15 -1.79 6.04 -35.39 -0.21 -2.00 16 24 C -0.09 -1.07 5.47 -91.77 -0.50 -1.57 16 25 C -0.18 -1.51 10.03 -26.73 -0.27 -1.78 16 26 C -0.16 -1.54 10.23 -26.73 -0.27 -1.81 16 27 C 0.10 2.02 5.80 -3.71 -0.02 2.00 16 28 H 0.03 0.73 7.46 -51.93 -0.39 0.34 16 29 H 0.00 -0.02 6.47 -51.93 -0.34 -0.35 16 30 H 0.05 1.24 7.12 -51.93 -0.37 0.87 16 31 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.14 1.85 3.99 -77.03 -0.31 1.54 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.21 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.15 2.24 6.07 -51.93 -0.32 1.92 16 40 H 0.09 0.67 7.28 -51.93 -0.38 0.29 16 41 H 0.11 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.06 1.30 7.50 -51.93 -0.39 0.91 16 45 H 0.09 2.17 7.00 -51.93 -0.36 1.80 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -32.85 364.52 -10.40 -43.25 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.53 Total: 1.38 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.57 Total: 2.58 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.50 Total: -58.32 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.39 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.34 Total: -0.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.85 -10.40 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027574292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.635 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds