Wall clock time and date at job start Tue Mar 31 2020 18:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.36940 * 120.00062 * 2 1 4 4 H 1.08003 * 120.00154 * 159.86230 * 3 2 1 5 5 C 1.38807 * 120.00217 * 339.86758 * 3 2 1 6 6 N 1.31621 * 119.99685 * 345.42879 * 5 3 2 7 7 Si 1.86795 * 120.00400 * 165.42942 * 5 3 2 8 8 H 1.48503 * 109.47077 * 84.98139 * 7 5 3 9 9 H 1.48502 * 109.47422 * 204.98400 * 7 5 3 10 10 H 1.48496 * 109.47220 * 324.98648 * 7 5 3 11 11 C 1.46502 * 120.00233 * 180.27882 * 2 1 3 12 12 H 1.08996 * 109.50197 * 179.66097 * 11 2 1 13 13 C 1.53048 * 109.49423 * 299.72257 * 11 2 1 14 14 C 1.53045 * 109.53648 * 181.31488 * 13 11 2 15 15 C 1.53197 * 109.31031 * 298.63834 * 14 13 11 16 16 N 1.46923 * 108.78124 * 54.63207 * 15 14 13 17 17 C 1.34774 * 120.62743 * 126.36436 * 16 15 14 18 18 O 1.21633 * 119.99672 * 187.04124 * 17 16 15 19 19 C 1.47267 * 120.00395 * 7.04761 * 17 16 15 20 20 N 1.33558 * 123.13812 * 6.86594 * 19 17 16 21 21 C 1.28652 * 115.76881 * 180.02562 * 20 19 17 22 22 S 1.70770 * 110.55290 * 359.97438 * 21 20 19 23 23 C 1.35203 * 123.14186 * 186.56812 * 19 17 16 24 24 C 1.50699 * 125.58823 * 0.02562 * 23 19 17 25 25 C 1.52999 * 117.49655 * 188.61849 * 24 23 19 26 26 C 1.52997 * 117.50621 * 119.99399 * 24 23 19 27 27 C 1.46925 * 118.73747 * 306.39550 * 16 15 14 28 28 H 1.08999 * 109.47725 * 85.82500 * 1 2 3 29 29 H 1.09001 * 109.47042 * 205.83138 * 1 2 3 30 30 H 1.09006 * 109.47175 * 325.82617 * 1 2 3 31 31 H 0.97007 * 119.99917 * 180.02562 * 6 5 3 32 32 H 1.09002 * 109.45922 * 301.33651 * 13 11 2 33 33 H 1.09005 * 109.45986 * 61.29635 * 13 11 2 34 34 H 1.09000 * 109.49741 * 58.58299 * 14 13 11 35 35 H 1.08996 * 109.49669 * 178.68615 * 14 13 11 36 36 H 1.09003 * 109.58323 * 174.42419 * 15 14 13 37 37 H 1.09001 * 109.58449 * 294.70520 * 15 14 13 38 38 H 1.07996 * 124.72411 * 179.97438 * 21 20 19 39 39 H 1.09007 * 115.54442 * 334.31651 * 24 23 19 40 40 H 1.08993 * 117.50472 * 359.97438 * 25 24 23 41 41 H 1.09009 * 117.49902 * 145.01700 * 25 24 23 42 42 H 1.08995 * 117.49872 * 214.98015 * 26 24 23 43 43 H 1.09009 * 117.49482 * 359.97438 * 26 24 23 44 44 H 1.08999 * 109.58858 * 293.81658 * 27 16 15 45 45 H 1.09000 * 109.58567 * 173.38922 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1801 1.2145 0.3220 5 6 1.5192 2.3513 -0.4137 6 7 0.3796 2.2860 -1.0690 7 14 2.2882 4.0123 -0.0406 8 1 3.2823 4.3450 -1.0925 9 1 1.2293 5.0531 -0.0132 10 1 2.9644 3.9592 1.2803 11 6 2.1975 -1.2687 -0.0062 12 1 3.2691 -1.0700 -0.0113 13 6 1.8334 -2.0748 1.2429 14 6 2.6228 -3.3858 1.2540 15 6 2.2497 -4.2123 0.0192 16 7 2.4603 -3.3913 -1.1809 17 6 3.2273 -3.8403 -2.1941 18 8 3.4991 -3.1042 -3.1234 19 6 3.7361 -5.2222 -2.1761 20 7 3.3707 -6.1229 -1.2602 21 6 3.9031 -7.2882 -1.3781 22 16 4.9558 -7.3331 -2.7220 23 6 4.6123 -5.6992 -3.0887 24 6 5.1939 -4.9174 -4.2383 25 6 6.0103 -5.6897 -5.2765 26 6 6.7148 -4.7590 -4.2874 27 6 1.8195 -2.0713 -1.2551 28 1 -0.3634 0.0748 -1.0249 29 1 -0.3633 -0.9250 0.4478 30 1 -0.3634 0.8503 0.5773 31 1 -0.0608 3.1005 -1.3585 32 1 2.0787 -1.4956 2.1331 33 1 0.7656 -2.2939 1.2352 34 1 3.6906 -3.1677 1.2366 35 1 2.3806 -3.9487 2.1554 36 1 2.8801 -5.1003 -0.0302 37 1 1.2031 -4.5102 0.0816 38 1 3.7109 -8.1218 -0.7190 39 1 4.5891 -4.0825 -4.5926 40 1 6.1271 -6.7631 -5.1278 41 1 5.9428 -5.3630 -6.3143 42 1 7.1108 -3.8201 -4.6743 43 1 7.2949 -5.2200 -3.4878 44 1 0.7371 -2.1924 -1.2978 45 1 2.1660 -1.5464 -2.1453 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027574292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:00 Heat of formation + Delta-G solvation = 60.457362 kcal Electronic energy + Delta-G solvation = -27254.037989 eV Core-core repulsion = 23592.958754 eV Total energy + Delta-G solvation = -3661.079235 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.95594 -40.12143 -38.83558 -38.19495 -36.75497 -33.97990 -32.85217 -31.59418 -30.59643 -28.09933 -27.59040 -26.14340 -25.17551 -23.53513 -23.29003 -22.95134 -22.83250 -20.82056 -19.89217 -19.18885 -18.76788 -17.56127 -17.38045 -16.97129 -16.57581 -16.47132 -15.91758 -15.56206 -15.50344 -15.27518 -14.97373 -14.93205 -14.70204 -14.41593 -13.96993 -13.86805 -13.54707 -13.12532 -13.06835 -12.93175 -12.81557 -12.54631 -12.50893 -12.26487 -12.20748 -12.13165 -12.04935 -11.89180 -11.74042 -11.56155 -11.44788 -10.93994 -10.66480 -10.29920 -10.08544 -9.97497 -9.60667 -8.82063 -7.86675 -5.32972 -0.52374 0.21091 0.60992 0.90910 1.43105 1.44379 1.53927 1.99621 2.21804 2.48991 2.87638 3.06467 3.26407 3.40349 3.59354 3.72390 3.86994 3.97744 4.00261 4.10395 4.16442 4.22316 4.31415 4.33126 4.55231 4.58806 4.65088 4.66161 4.77205 4.77741 4.90430 4.92333 5.03736 5.10022 5.12779 5.15274 5.22767 5.25120 5.40077 5.50225 5.56148 5.67134 5.68491 6.26999 6.29718 6.51648 7.07120 7.11326 7.82299 8.25195 9.16687 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016856 B = 0.003153 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.708989 B = 8879.479991 C = 9953.595544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.608 5.608 3 C -0.269 4.269 4 H 0.066 0.934 5 C -0.052 4.052 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.270 1.270 11 C 0.170 3.830 12 H 0.041 0.959 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.074 3.926 16 N -0.590 5.590 17 C 0.576 3.424 18 O -0.577 6.577 19 C -0.022 4.022 20 N -0.453 5.453 21 C -0.004 4.004 22 S 0.292 5.708 23 C -0.167 4.167 24 C -0.124 4.124 25 C -0.149 4.149 26 C -0.159 4.159 27 C 0.114 3.886 28 H -0.003 1.003 29 H 0.033 0.967 30 H 0.022 0.978 31 H 0.249 0.751 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.158 0.842 37 H 0.067 0.933 38 H 0.250 0.750 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.940 -27.999 -0.764 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.331 5.331 3 C -0.399 4.399 4 H 0.084 0.916 5 C -0.247 4.247 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.213 1.213 9 H -0.215 1.215 10 H -0.195 1.195 11 C 0.062 3.938 12 H 0.060 0.940 13 C -0.161 4.161 14 C -0.158 4.158 15 C -0.047 4.047 16 N -0.321 5.321 17 C 0.363 3.637 18 O -0.458 6.458 19 C -0.155 4.155 20 N -0.167 5.167 21 C -0.302 4.302 22 S 0.549 5.451 23 C -0.291 4.291 24 C -0.144 4.144 25 C -0.187 4.187 26 C -0.197 4.197 27 C -0.011 4.011 28 H 0.015 0.985 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.174 0.826 37 H 0.085 0.915 38 H 0.266 0.734 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.168 -28.173 -1.216 30.331 hybrid contribution -0.705 2.845 -0.119 2.934 sum 10.463 -25.328 -1.335 27.437 Atomic orbital electron populations 1.20491 0.82413 0.96257 0.97250 1.44195 1.02233 1.00899 1.85727 1.19541 0.97010 0.86233 1.37080 0.91589 1.25763 0.98536 1.01750 0.98665 1.70263 1.19733 1.27272 1.41129 0.85241 0.77233 0.79438 0.78232 1.21290 1.21480 1.19467 1.20728 0.94699 0.85316 0.93077 0.94019 1.21936 1.00451 0.96265 0.97444 1.21890 0.99538 0.95439 0.98963 1.23084 1.03964 0.96006 0.81667 1.48129 1.47540 1.17745 1.18642 1.17758 0.78071 0.85863 0.81992 1.90717 1.60154 1.57834 1.37049 1.19960 1.03630 0.95172 0.96766 1.66725 1.25141 1.01470 1.23411 1.29301 0.98849 0.99189 1.02877 1.82370 1.39873 1.00897 1.21911 1.25035 1.01447 1.01834 1.00793 1.20623 0.95493 1.02186 0.96142 1.23268 1.00581 0.98623 0.96190 1.23170 0.91295 1.02503 1.02699 1.22043 0.96273 0.82685 1.00117 0.98452 0.94840 0.95949 0.94177 0.92393 0.91915 0.92796 0.87678 0.82561 0.91498 0.73370 0.87145 0.86457 0.86742 0.88018 0.87301 0.92355 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.42 7.90 127.77 1.01 10.43 16 2 N -0.61 -32.64 2.82 -702.35 -1.98 -34.62 16 3 C -0.27 -15.80 9.62 84.03 0.81 -14.99 16 4 H 0.07 3.82 7.81 -2.91 -0.02 3.79 16 5 C -0.05 -3.08 5.07 84.86 0.43 -2.65 16 6 N -0.94 -58.13 10.64 21.65 0.23 -57.90 16 7 Si 0.97 47.36 29.58 68.60 2.03 49.39 16 8 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 C 0.17 7.66 2.74 45.07 0.12 7.78 16 12 H 0.04 2.03 7.85 -2.39 -0.02 2.01 16 13 C -0.12 -4.30 5.13 30.63 0.16 -4.14 16 14 C -0.12 -3.28 6.08 30.68 0.19 -3.09 16 15 C 0.07 2.09 6.02 86.36 0.52 2.61 16 16 N -0.59 -21.84 2.97 -822.95 -2.45 -24.28 16 17 C 0.58 21.98 7.65 86.62 0.66 22.64 16 18 O -0.58 -26.14 13.58 -4.14 -0.06 -26.19 16 19 C -0.02 -0.63 6.49 40.56 0.26 -0.37 16 20 N -0.45 -9.79 6.75 -193.03 -1.30 -11.09 16 21 C 0.00 -0.05 12.17 130.71 1.59 1.54 16 22 S 0.29 3.27 21.77 -56.49 -1.23 2.04 16 23 C -0.17 -3.85 6.04 24.99 0.15 -3.70 16 24 C -0.12 -3.01 5.47 -11.54 -0.06 -3.07 16 25 C -0.15 -2.27 10.03 30.59 0.31 -1.96 16 26 C -0.16 -2.94 10.23 30.59 0.31 -2.62 16 27 C 0.11 5.04 5.80 86.36 0.50 5.54 16 28 H 0.00 -0.16 7.46 -2.39 -0.02 -0.18 16 29 H 0.03 1.48 6.47 -2.39 -0.02 1.46 16 30 H 0.02 1.23 7.12 -2.38 -0.02 1.22 16 31 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 2.16 6.72 -2.38 -0.02 2.15 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.16 3.91 3.99 -51.96 -0.21 3.71 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 38 H 0.25 0.48 8.06 -2.91 -0.02 0.45 16 39 H 0.11 3.62 6.07 -2.38 -0.01 3.61 16 40 H 0.12 1.21 7.28 -2.39 -0.02 1.19 16 41 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.06 2.58 7.50 -2.39 -0.02 2.56 16 45 H 0.05 2.49 7.00 -2.39 -0.02 2.48 16 Total: -1.00 -78.67 364.52 3.01 -75.66 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.81 Total: 13.05 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.96 Total: 13.95 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.50 Total: -127.89 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.23 Total: 2.04 kcal Total: -78.67 3.01 -75.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027574292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.114 kcal (2) G-P(sol) polarization free energy of solvation -78.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds