Wall clock time and date at job start Tue Mar 31 2020 18:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36942 * 120.00120 * 2 1 4 4 H 1.07999 * 120.00268 * 198.09512 * 3 2 1 5 5 C 1.38817 * 119.99946 * 18.09326 * 3 2 1 6 6 N 1.31622 * 119.99701 * 24.15225 * 5 3 2 7 7 Si 1.86796 * 120.00208 * 204.15507 * 5 3 2 8 8 H 1.48499 * 109.47219 * 89.99528 * 7 5 3 9 9 H 1.48496 * 109.47152 * 210.00017 * 7 5 3 10 10 H 1.48502 * 109.46895 * 330.00082 * 7 5 3 11 11 C 1.46496 * 120.00411 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.50462 * 180.02562 * 11 2 1 13 13 C 1.53042 * 109.49771 * 59.99265 * 11 2 1 14 14 C 1.53046 * 109.53507 * 178.68534 * 13 11 2 15 15 C 1.53188 * 109.31140 * 61.37331 * 14 13 11 16 16 N 1.46928 * 108.77626 * 305.36115 * 15 14 13 17 17 C 1.34779 * 120.62882 * 233.61092 * 16 15 14 18 18 O 1.21680 * 120.00010 * 15.84681 * 17 16 15 19 19 C 1.46684 * 119.99966 * 195.84004 * 17 16 15 20 20 S 1.76217 * 126.12707 * 9.59628 * 19 17 16 21 21 C 1.70953 * 90.31145 * 179.97438 * 20 19 17 22 22 N 1.29425 * 110.39336 * 0.02562 * 21 20 19 23 23 C 1.30945 * 117.36031 * 359.70591 * 22 21 20 24 24 C 1.50709 * 122.90263 * 180.34783 * 23 22 21 25 25 C 1.52995 * 117.49667 * 8.81515 * 24 23 22 26 26 C 1.52998 * 60.00219 * 252.51140 * 25 24 23 27 27 C 1.46920 * 118.73769 * 53.60761 * 16 15 14 28 28 H 1.09007 * 109.47048 * 276.11498 * 1 2 3 29 29 H 1.08995 * 109.47289 * 36.11101 * 1 2 3 30 30 H 1.08997 * 109.46943 * 156.11520 * 1 2 3 31 31 H 0.97001 * 119.99579 * 180.02562 * 6 5 3 32 32 H 1.08989 * 109.46242 * 298.70830 * 13 11 2 33 33 H 1.09004 * 109.45670 * 58.66972 * 13 11 2 34 34 H 1.09004 * 109.49284 * 181.31812 * 14 13 11 35 35 H 1.08994 * 109.50226 * 301.38484 * 14 13 11 36 36 H 1.09000 * 109.58851 * 65.14693 * 15 14 13 37 37 H 1.08995 * 109.58574 * 185.42922 * 15 14 13 38 38 H 1.07997 * 124.80412 * 179.97438 * 21 20 19 39 39 H 1.08993 * 115.54603 * 154.52347 * 24 23 22 40 40 H 1.08999 * 117.50574 * 0.02562 * 25 24 23 41 41 H 1.09004 * 117.49523 * 145.02154 * 25 24 23 42 42 H 1.09004 * 117.49938 * 252.51960 * 26 25 24 43 43 H 1.08996 * 117.52072 * 107.48199 * 26 25 24 44 44 H 1.09009 * 109.58822 * 186.60618 * 27 16 15 45 45 H 1.09001 * 109.58656 * 66.18330 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1896 1.2091 -0.2905 5 6 1.5071 2.3584 0.3734 6 7 0.4494 2.3089 1.1552 7 14 2.1434 4.0064 -0.2338 8 1 1.4846 4.3479 -1.5202 9 1 1.8392 5.0555 0.7720 10 1 3.6123 3.9257 -0.4362 11 6 2.1975 -1.2686 -0.0006 12 1 3.2693 -1.0700 0.0000 13 6 1.8282 -2.0712 -1.2502 14 6 2.6177 -3.3822 -1.2683 15 6 2.2497 -4.2122 -0.0345 16 7 2.4654 -3.3946 1.1670 17 6 3.2362 -3.8467 2.1760 18 8 3.9855 -4.7880 1.9944 19 6 3.1719 -3.2038 3.4929 20 16 1.9916 -1.9995 4.0046 21 6 2.7279 -1.9189 5.5453 22 7 3.7378 -2.7261 5.6053 23 6 4.0069 -3.4338 4.5369 24 6 5.1477 -4.4165 4.4718 25 6 5.8850 -4.7303 5.7751 26 6 6.5602 -3.8752 4.7009 27 6 1.8248 -2.0748 1.2477 28 1 -0.3633 0.1095 1.0219 29 1 -0.3633 0.8302 -0.6056 30 1 -0.3633 -0.9396 -0.4161 31 1 0.0002 3.1281 1.4158 32 1 0.7606 -2.2903 -1.2387 33 1 2.0697 -1.4895 -2.1399 34 1 2.3716 -3.9426 -2.1703 35 1 3.6855 -3.1641 -1.2555 36 1 1.2021 -4.5079 -0.0921 37 1 2.8784 -5.1015 0.0084 38 1 2.3976 -1.2838 6.3539 39 1 5.0296 -5.2266 3.7522 40 1 5.5448 -4.2264 6.6798 41 1 6.2522 -5.7473 5.9132 42 1 7.3716 -4.3297 4.1324 43 1 6.6646 -2.8084 4.8984 44 1 2.1750 -1.5524 2.1381 45 1 0.7426 -2.1961 1.2947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027608386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:40 Heat of formation + Delta-G solvation = 56.473504 kcal Electronic energy + Delta-G solvation = -27585.246308 eV Core-core repulsion = 23923.994320 eV Total energy + Delta-G solvation = -3661.251988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68743 -40.73412 -38.87447 -37.43820 -36.63846 -34.09304 -33.31973 -31.57079 -30.40281 -28.00224 -27.62427 -26.02925 -25.37245 -24.11087 -23.27027 -23.16513 -21.95339 -20.82177 -19.53408 -19.32776 -18.71529 -17.58449 -17.50989 -16.98800 -16.49637 -16.48102 -15.85248 -15.64352 -15.54203 -15.39120 -15.15655 -14.99753 -14.60853 -14.42447 -14.02859 -13.75841 -13.60380 -13.33101 -13.03850 -12.87332 -12.63135 -12.47944 -12.40920 -12.24276 -12.17824 -12.09583 -11.88381 -11.72958 -11.58377 -11.49297 -11.42013 -11.03876 -10.66144 -10.59180 -10.34830 -9.84546 -9.58044 -8.80746 -7.84977 -5.23770 -0.80855 0.20770 0.60595 1.31110 1.46472 1.50150 1.56268 1.81734 1.99362 2.52137 2.96755 3.13489 3.26312 3.35447 3.64137 3.75447 3.85953 3.95039 3.99626 4.09727 4.11355 4.22173 4.24955 4.32138 4.46291 4.52794 4.63090 4.73078 4.73616 4.81475 4.86837 4.96927 4.98816 5.05488 5.08775 5.20843 5.26484 5.29182 5.37428 5.47232 5.52720 5.65207 5.72473 6.16279 6.31311 6.55944 6.92037 7.14575 7.86701 8.28648 9.17536 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012075 B = 0.004253 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.296109 B = 6582.277207 C = 7768.932907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.600 5.600 3 C -0.268 4.268 4 H 0.063 0.937 5 C -0.036 4.036 6 N -0.919 5.919 7 Si 0.950 3.050 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.275 1.275 11 C 0.169 3.831 12 H 0.046 0.954 13 C -0.123 4.123 14 C -0.120 4.120 15 C 0.114 3.886 16 N -0.607 5.607 17 C 0.599 3.401 18 O -0.551 6.551 19 C -0.332 4.332 20 S 0.225 5.775 21 C 0.014 3.986 22 N -0.495 5.495 23 C 0.168 3.832 24 C -0.120 4.120 25 C -0.143 4.143 26 C -0.156 4.156 27 C 0.098 3.902 28 H 0.011 0.989 29 H 0.013 0.987 30 H 0.040 0.960 31 H 0.250 0.750 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.236 0.764 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.825 -13.543 4.342 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.081 0.919 5 C -0.233 4.233 6 N -0.565 5.565 7 Si 0.779 3.221 8 H -0.215 1.215 9 H -0.222 1.222 10 H -0.200 1.200 11 C 0.061 3.939 12 H 0.064 0.936 13 C -0.162 4.162 14 C -0.159 4.159 15 C -0.007 4.007 16 N -0.339 5.339 17 C 0.388 3.612 18 O -0.432 6.432 19 C -0.456 4.456 20 S 0.484 5.516 21 C -0.279 4.279 22 N -0.209 5.209 23 C 0.028 3.972 24 C -0.141 4.141 25 C -0.180 4.180 26 C -0.194 4.194 27 C -0.029 4.029 28 H 0.029 0.971 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.252 0.748 39 H 0.149 0.851 40 H 0.118 0.882 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.458 -13.334 4.387 14.251 hybrid contribution 0.662 1.098 -0.095 1.285 sum 3.120 -12.236 4.293 13.337 Atomic orbital electron populations 1.20586 0.82284 0.96493 0.98117 1.44131 1.02135 1.00581 1.85415 1.19384 0.96113 0.85607 1.38657 0.91902 1.25387 0.99094 1.00398 0.98440 1.70244 1.24136 1.27161 1.34931 0.85533 0.78123 0.80824 0.77589 1.21504 1.22238 1.20036 1.20712 0.95121 0.85310 0.92785 0.93603 1.21946 1.00675 0.95758 0.97851 1.21845 0.99972 0.95786 0.98277 1.21825 1.02545 0.93864 0.82502 1.48048 1.49194 1.18394 1.18308 1.16866 0.79449 0.82449 0.82473 1.90678 1.38677 1.30752 1.83081 1.25514 1.07546 1.11193 1.01366 1.84961 1.29153 1.32381 1.05091 1.29674 0.95392 0.99392 1.03410 1.66119 1.18059 1.08558 1.28189 1.19960 0.95608 0.94977 0.86611 1.20921 0.89538 0.99857 1.03763 1.23016 1.01241 1.01706 0.92070 1.22974 0.93320 1.00056 1.03013 1.22729 0.98089 0.81659 1.00384 0.97056 0.96851 0.94120 0.94121 0.91154 0.92168 0.87748 0.92696 0.89353 0.89015 0.74804 0.85124 0.88231 0.86335 0.86716 0.89744 0.90949 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.49 7.96 127.77 1.02 8.51 16 2 N -0.60 -27.43 2.82 -702.33 -1.98 -29.41 16 3 C -0.27 -13.95 9.58 84.03 0.80 -13.14 16 4 H 0.06 3.30 7.85 -2.91 -0.02 3.28 16 5 C -0.04 -1.92 4.86 84.86 0.41 -1.51 16 6 N -0.92 -50.69 11.12 21.65 0.24 -50.45 16 7 Si 0.95 43.43 29.62 68.60 2.03 45.46 16 8 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 9 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 C 0.17 6.34 2.74 45.07 0.12 6.46 16 12 H 0.05 1.90 7.83 -2.39 -0.02 1.88 16 13 C -0.12 -3.66 5.13 30.62 0.16 -3.50 16 14 C -0.12 -2.87 6.08 30.67 0.19 -2.68 16 15 C 0.11 2.81 6.43 86.36 0.56 3.37 16 16 N -0.61 -18.72 2.97 -823.61 -2.45 -21.17 16 17 C 0.60 20.32 7.54 86.45 0.65 20.97 16 18 O -0.55 -19.99 13.85 -4.29 -0.06 -20.05 16 19 C -0.33 -10.86 6.14 23.88 0.15 -10.71 16 20 S 0.23 6.53 18.82 -56.49 -1.06 5.46 16 21 C 0.01 0.37 12.22 130.60 1.60 1.96 16 22 N -0.50 -14.51 9.81 -190.40 -1.87 -16.38 16 23 C 0.17 5.28 6.41 42.09 0.27 5.55 16 24 C -0.12 -3.41 5.54 -11.54 -0.06 -3.47 16 25 C -0.14 -3.17 10.08 30.59 0.31 -2.86 16 26 C -0.16 -3.75 10.23 30.59 0.31 -3.44 16 27 C 0.10 3.30 4.68 86.37 0.40 3.71 16 28 H 0.01 0.54 7.40 -2.38 -0.02 0.52 16 29 H 0.01 0.63 7.37 -2.39 -0.02 0.61 16 30 H 0.04 1.48 6.47 -2.39 -0.02 1.46 16 31 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.07 1.97 6.72 -2.39 -0.02 1.95 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.28 7.07 -2.39 -0.02 2.26 16 38 H 0.24 3.96 8.06 -2.91 -0.02 3.94 16 39 H 0.13 4.02 6.05 -2.39 -0.01 4.00 16 40 H 0.10 2.30 7.74 -2.39 -0.02 2.28 16 41 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 2.68 3.78 -21.51 -0.08 2.60 16 45 H 0.08 2.51 7.51 -2.39 -0.02 2.49 16 Total: -1.00 -63.37 365.11 2.67 -60.70 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.93 Total: 16.61 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.88 Total: 9.21 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -6.05 Total: -117.40 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.06 Total: -20.05 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.06 Total: 5.46 kcal Total: -63.37 2.67 -60.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027608386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.171 kcal (2) G-P(sol) polarization free energy of solvation -63.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds