Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 119.99898 * 2 1 4 4 H 1.08003 * 119.99648 * 201.66211 * 3 2 1 5 5 C 1.38809 * 119.99986 * 21.66578 * 3 2 1 6 6 N 1.31617 * 120.00072 * 13.50919 * 5 3 2 7 7 Si 1.86805 * 119.99825 * 193.50668 * 5 3 2 8 8 H 1.48495 * 109.47162 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.46797 * 120.00308 * 7 5 3 10 10 H 1.48499 * 109.47110 * 239.99975 * 7 5 3 11 11 C 1.46500 * 120.00175 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.49805 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49550 * 300.15969 * 11 2 1 14 14 C 1.53044 * 109.53816 * 181.31675 * 13 11 2 15 15 C 1.53623 * 109.24166 * 298.50992 * 14 13 11 16 16 N 1.46929 * 108.54193 * 54.85679 * 15 14 13 17 17 C 1.34779 * 120.63139 * 126.37210 * 16 15 14 18 18 O 1.21688 * 119.99862 * 3.36100 * 17 16 15 19 19 C 1.46679 * 119.99902 * 183.36669 * 17 16 15 20 20 S 1.76208 * 126.13372 * 309.99424 * 19 17 16 21 21 C 1.70947 * 90.31643 * 180.02562 * 20 19 17 22 22 N 1.29430 * 110.39256 * 359.73668 * 21 20 19 23 23 C 1.30946 * 117.36178 * 0.49517 * 22 21 20 24 24 C 1.50692 * 122.90416 * 179.75258 * 23 22 21 25 25 C 1.53001 * 117.50057 * 299.70477 * 24 23 22 26 26 C 1.53001 * 60.02985 * 107.50484 * 25 24 23 27 27 C 1.46934 * 118.73959 * 306.09181 * 16 15 14 28 28 H 1.09005 * 109.47168 * 267.61762 * 1 2 3 29 29 H 1.08994 * 109.47431 * 27.61717 * 1 2 3 30 30 H 1.08998 * 109.47199 * 147.62113 * 1 2 3 31 31 H 0.97008 * 119.99945 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45912 * 301.33811 * 13 11 2 33 33 H 1.08997 * 109.45893 * 61.29228 * 13 11 2 34 34 H 1.08997 * 109.49410 * 58.58356 * 14 13 11 35 35 H 1.08997 * 109.49613 * 178.68230 * 14 13 11 36 36 H 1.08999 * 109.74226 * 295.12334 * 15 14 13 37 37 H 1.08993 * 109.66714 * 174.54907 * 15 14 13 38 38 H 1.08005 * 124.81014 * 179.97438 * 21 20 19 39 39 H 1.09004 * 115.54894 * 154.03810 * 24 23 22 40 40 H 1.09005 * 117.50020 * 215.00112 * 25 24 23 41 41 H 1.08991 * 117.49716 * 0.02562 * 25 24 23 42 42 H 1.09006 * 117.49913 * 107.50367 * 26 25 24 43 43 H 1.09005 * 117.50063 * 252.52251 * 26 25 24 44 44 H 1.08996 * 109.58659 * 173.64916 * 27 16 15 45 45 H 1.09000 * 109.58607 * 293.93121 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1725 1.2189 -0.3453 5 6 1.5292 2.3456 0.4438 6 7 0.3942 2.2725 1.1063 7 14 2.3050 4.0099 0.1009 8 1 3.5686 3.8206 -0.6558 9 1 1.3678 4.8371 -0.7007 10 1 2.5949 4.6951 1.3860 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8252 -2.0740 1.2465 14 6 2.6146 -3.3851 1.2636 15 6 2.2451 -4.2148 0.0246 16 7 2.4682 -3.3921 -1.1721 17 6 3.2411 -3.8421 -2.1805 18 8 3.7118 -4.9632 -2.1326 19 6 3.5147 -2.9804 -3.3355 20 16 2.3172 -2.0999 -4.2819 21 6 3.5539 -1.4761 -5.2838 22 7 4.7100 -1.9109 -4.8971 23 6 4.7353 -2.7190 -3.8671 24 6 6.0104 -3.3030 -3.3159 25 6 6.8498 -4.1758 -4.2511 26 6 7.3319 -2.7726 -3.8775 27 6 1.8278 -2.0720 -1.2515 28 1 -0.3634 -0.0427 1.0268 29 1 -0.3634 0.9105 -0.4763 30 1 -0.3633 -0.8679 -0.5503 31 1 -0.0396 3.0829 1.4161 32 1 2.0646 -1.4943 2.1379 33 1 0.7576 -2.2930 1.2319 34 1 3.6824 -3.1669 1.2532 35 1 2.3664 -3.9474 2.1638 36 1 1.1963 -4.5071 0.0766 37 1 2.8727 -5.1046 -0.0215 38 1 3.3937 -0.8100 -6.1188 39 1 5.9850 -3.5757 -2.2608 40 1 7.3768 -5.0226 -3.8113 41 1 6.4800 -4.3272 -5.2651 42 1 8.1759 -2.6962 -3.1919 43 1 7.2786 -2.0010 -4.6456 44 1 2.1802 -1.5478 -2.1397 45 1 0.7459 -2.1933 -1.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027608387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = 69.948649 kcal Electronic energy + Delta-G solvation = -27645.869233 eV Core-core repulsion = 23985.201571 eV Total energy + Delta-G solvation = -3660.667662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.58091 -39.50617 -37.45186 -36.50457 -34.99028 -32.67626 -31.63481 -30.46343 -28.75960 -26.47503 -26.09134 -24.87328 -23.68542 -23.03484 -22.35257 -21.94163 -20.62395 -19.36226 -18.32057 -18.19086 -16.93692 -16.67492 -16.37920 -15.58724 -15.21251 -14.80197 -14.70242 -14.42720 -14.21242 -14.04309 -13.88571 -13.54032 -13.26935 -12.75801 -12.66227 -12.43324 -12.38680 -12.04354 -11.53539 -11.52207 -11.14752 -11.01841 -10.93388 -10.85110 -10.66494 -10.49795 -10.43004 -10.40918 -10.27102 -10.07070 -9.97103 -9.84075 -9.68879 -9.22930 -8.75354 -8.62923 -8.42267 -6.84709 -5.81327 -3.24980 0.33587 1.12353 1.54063 2.46752 2.84584 3.18734 3.33046 3.41413 3.43043 3.90036 4.09326 4.39790 4.54592 4.70541 4.84600 5.00198 5.11897 5.13221 5.21300 5.24255 5.36791 5.47056 5.48137 5.55953 5.62356 5.63868 5.75165 5.83503 5.95295 5.99346 6.02923 6.08136 6.16374 6.17703 6.30328 6.35766 6.62724 6.69256 6.82257 6.92057 7.30991 7.42122 7.58805 7.62486 7.75094 8.14792 8.32436 9.15854 9.78121 10.26232 11.24980 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004441 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.376791 B = 6303.950463 C = 7408.982305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.115 3.885 16 N -0.596 5.596 17 C 0.597 3.403 18 O -0.532 6.532 19 C -0.279 4.279 20 S 0.194 5.806 21 C 0.020 3.980 22 N -0.470 5.470 23 C 0.159 3.841 24 C -0.090 4.090 25 C -0.154 4.154 26 C -0.161 4.161 27 C 0.080 3.920 28 H 0.020 0.980 29 H 0.058 0.942 30 H -0.005 1.005 31 H 0.252 0.748 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.205 0.795 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -11.443 -9.098 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.313 5.313 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.061 3.939 12 H 0.084 0.916 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.007 4.007 16 N -0.328 5.328 17 C 0.383 3.617 18 O -0.410 6.410 19 C -0.403 4.403 20 S 0.450 5.550 21 C -0.276 4.276 22 N -0.184 5.184 23 C 0.022 3.978 24 C -0.111 4.111 25 C -0.192 4.192 26 C -0.198 4.198 27 C -0.045 4.045 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.013 0.987 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.108 0.892 38 H 0.221 0.779 39 H 0.139 0.861 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.124 0.876 44 H 0.101 0.899 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.144 -11.513 -9.330 15.388 hybrid contribution 0.817 0.937 0.249 1.268 sum 4.961 -10.576 -9.081 14.797 Atomic orbital electron populations 1.20799 0.82495 0.96906 0.98137 1.43921 1.01848 0.99905 1.85643 1.19253 0.97574 0.85016 1.36622 0.91390 1.24952 0.97807 0.98385 0.98236 1.70086 1.18741 1.26958 1.39257 0.86222 0.78622 0.84332 0.77620 1.20313 1.21535 1.21691 1.20544 0.96503 0.86336 0.90529 0.91646 1.22112 0.99534 0.94776 1.00773 1.22012 1.01050 0.97260 0.96699 1.21743 1.01390 0.94097 0.83469 1.48089 1.48053 1.18921 1.17760 1.16752 0.78574 0.85341 0.81050 1.90796 1.52050 1.18777 1.79421 1.25313 0.97323 1.10912 1.06793 1.84222 1.11638 1.38176 1.20924 1.28664 0.90951 1.03675 1.04274 1.65910 1.26512 1.12016 1.13917 1.19492 0.93296 0.94104 0.90899 1.20480 0.87067 1.04631 0.98879 1.22901 1.02173 0.94348 0.99766 1.23003 0.95660 0.97542 1.03592 1.22861 0.97731 0.81577 1.02314 0.96165 0.92374 0.98677 0.93734 0.91321 0.92351 0.91755 0.91112 0.91394 0.89238 0.77890 0.86117 0.88251 0.88772 0.88464 0.87602 0.89909 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 8.09 59.85 0.48 4.18 16 2 N -0.59 -13.84 2.82 -173.35 -0.49 -14.33 16 3 C -0.26 -6.70 9.60 -15.06 -0.14 -6.84 16 4 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 5 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 6 N -0.91 -25.34 10.70 55.49 0.59 -24.75 16 7 Si 0.90 21.25 29.58 -169.99 -5.03 16.22 16 8 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.17 3.30 2.75 -67.81 -0.19 3.11 16 12 H 0.07 1.36 7.86 -51.93 -0.41 0.95 16 13 C -0.13 -2.27 5.14 -26.68 -0.14 -2.41 16 14 C -0.13 -1.82 6.10 -26.38 -0.16 -1.98 16 15 C 0.11 1.58 6.45 -3.48 -0.02 1.56 16 16 N -0.60 -9.31 2.97 -174.04 -0.52 -9.83 16 17 C 0.60 9.86 7.01 -12.85 -0.09 9.77 16 18 O -0.53 -9.71 16.00 5.20 0.08 -9.63 16 19 C -0.28 -4.31 5.32 -37.09 -0.20 -4.51 16 20 S 0.19 2.46 20.48 -107.50 -2.20 0.26 16 21 C 0.02 0.23 12.22 51.75 0.63 0.86 16 22 N -0.47 -6.66 9.80 -11.53 -0.11 -6.77 16 23 C 0.16 2.41 6.42 -83.89 -0.54 1.87 16 24 C -0.09 -1.25 5.51 -91.74 -0.51 -1.75 16 25 C -0.15 -1.78 10.23 -26.73 -0.27 -2.06 16 26 C -0.16 -1.86 10.09 -26.69 -0.27 -2.13 16 27 C 0.08 1.34 5.32 -3.71 -0.02 1.32 16 28 H 0.02 0.50 7.79 -51.93 -0.40 0.09 16 29 H 0.06 1.46 6.74 -51.93 -0.35 1.11 16 30 H -0.01 -0.10 6.35 -51.93 -0.33 -0.43 16 31 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.22 7.02 -51.93 -0.36 0.86 16 38 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.12 1.75 7.72 -51.93 -0.40 1.35 16 40 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.11 1.28 7.74 -51.93 -0.40 0.88 16 44 H 0.08 1.41 4.32 -37.80 -0.16 1.25 16 45 H 0.07 1.19 6.49 -51.93 -0.34 0.85 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -30.47 369.86 -10.10 -40.57 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.49 Total: 1.65 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.52 Total: 1.04 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.52 Total: -55.68 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 16 Polarization: 2.46 SS G_CDS: -2.20 Total: 0.26 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.47 -10.10 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027608387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.520 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds