Wall clock time and date at job start Tue Mar 31 2020 18:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36938 * 119.99898 * 2 1 4 4 H 1.08003 * 119.99648 * 201.66211 * 3 2 1 5 5 C 1.38809 * 119.99986 * 21.66578 * 3 2 1 6 6 N 1.31617 * 120.00072 * 13.50919 * 5 3 2 7 7 Si 1.86805 * 119.99825 * 193.50668 * 5 3 2 8 8 H 1.48495 * 109.47162 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.46797 * 120.00308 * 7 5 3 10 10 H 1.48499 * 109.47110 * 239.99975 * 7 5 3 11 11 C 1.46500 * 120.00175 * 180.02562 * 2 1 3 12 12 H 1.08995 * 109.49805 * 180.02562 * 11 2 1 13 13 C 1.53046 * 109.49550 * 300.15969 * 11 2 1 14 14 C 1.53044 * 109.53816 * 181.31675 * 13 11 2 15 15 C 1.53623 * 109.24166 * 298.50992 * 14 13 11 16 16 N 1.46929 * 108.54193 * 54.85679 * 15 14 13 17 17 C 1.34779 * 120.63139 * 126.37210 * 16 15 14 18 18 O 1.21688 * 119.99862 * 3.36100 * 17 16 15 19 19 C 1.46679 * 119.99902 * 183.36669 * 17 16 15 20 20 S 1.76208 * 126.13372 * 309.99424 * 19 17 16 21 21 C 1.70947 * 90.31643 * 180.02562 * 20 19 17 22 22 N 1.29430 * 110.39256 * 359.73668 * 21 20 19 23 23 C 1.30946 * 117.36178 * 0.49517 * 22 21 20 24 24 C 1.50692 * 122.90416 * 179.75258 * 23 22 21 25 25 C 1.53001 * 117.50057 * 299.70477 * 24 23 22 26 26 C 1.53001 * 60.02985 * 107.50484 * 25 24 23 27 27 C 1.46934 * 118.73959 * 306.09181 * 16 15 14 28 28 H 1.09005 * 109.47168 * 267.61762 * 1 2 3 29 29 H 1.08994 * 109.47431 * 27.61717 * 1 2 3 30 30 H 1.08998 * 109.47199 * 147.62113 * 1 2 3 31 31 H 0.97008 * 119.99945 * 180.02562 * 6 5 3 32 32 H 1.08997 * 109.45912 * 301.33811 * 13 11 2 33 33 H 1.08997 * 109.45893 * 61.29228 * 13 11 2 34 34 H 1.08997 * 109.49410 * 58.58356 * 14 13 11 35 35 H 1.08997 * 109.49613 * 178.68230 * 14 13 11 36 36 H 1.08999 * 109.74226 * 295.12334 * 15 14 13 37 37 H 1.08993 * 109.66714 * 174.54907 * 15 14 13 38 38 H 1.08005 * 124.81014 * 179.97438 * 21 20 19 39 39 H 1.09004 * 115.54894 * 154.03810 * 24 23 22 40 40 H 1.09005 * 117.50020 * 215.00112 * 25 24 23 41 41 H 1.08991 * 117.49716 * 0.02562 * 25 24 23 42 42 H 1.09006 * 117.49913 * 107.50367 * 26 25 24 43 43 H 1.09005 * 117.50063 * 252.52251 * 26 25 24 44 44 H 1.08996 * 109.58659 * 173.64916 * 27 16 15 45 45 H 1.09000 * 109.58607 * 293.93121 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1725 1.2189 -0.3453 5 6 1.5292 2.3456 0.4438 6 7 0.3942 2.2725 1.1063 7 14 2.3050 4.0099 0.1009 8 1 3.5686 3.8206 -0.6558 9 1 1.3678 4.8371 -0.7007 10 1 2.5949 4.6951 1.3860 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8252 -2.0740 1.2465 14 6 2.6146 -3.3851 1.2636 15 6 2.2451 -4.2148 0.0246 16 7 2.4682 -3.3921 -1.1721 17 6 3.2411 -3.8421 -2.1805 18 8 3.7118 -4.9632 -2.1326 19 6 3.5147 -2.9804 -3.3355 20 16 2.3172 -2.0999 -4.2819 21 6 3.5539 -1.4761 -5.2838 22 7 4.7100 -1.9109 -4.8971 23 6 4.7353 -2.7190 -3.8671 24 6 6.0104 -3.3030 -3.3159 25 6 6.8498 -4.1758 -4.2511 26 6 7.3319 -2.7726 -3.8775 27 6 1.8278 -2.0720 -1.2515 28 1 -0.3634 -0.0427 1.0268 29 1 -0.3634 0.9105 -0.4763 30 1 -0.3633 -0.8679 -0.5503 31 1 -0.0396 3.0829 1.4161 32 1 2.0646 -1.4943 2.1379 33 1 0.7576 -2.2930 1.2319 34 1 3.6824 -3.1669 1.2532 35 1 2.3664 -3.9474 2.1638 36 1 1.1963 -4.5071 0.0766 37 1 2.8727 -5.1046 -0.0215 38 1 3.3937 -0.8100 -6.1188 39 1 5.9850 -3.5757 -2.2608 40 1 7.3768 -5.0226 -3.8113 41 1 6.4800 -4.3272 -5.2651 42 1 8.1759 -2.6962 -3.1919 43 1 7.2786 -2.0010 -4.6456 44 1 2.1802 -1.5478 -2.1397 45 1 0.7459 -2.1933 -1.3039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027608387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:45 Heat of formation + Delta-G solvation = 52.977899 kcal Electronic energy + Delta-G solvation = -27646.605140 eV Core-core repulsion = 23985.201571 eV Total energy + Delta-G solvation = -3661.403569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72927 -40.69497 -38.90633 -37.47100 -36.65571 -34.05783 -33.32760 -31.62372 -30.35306 -28.03322 -27.58138 -26.09735 -25.32541 -24.12017 -23.30171 -23.19004 -22.00049 -20.75023 -19.56147 -19.25724 -18.72647 -17.95695 -17.58594 -17.02660 -16.59036 -16.18409 -15.79803 -15.69531 -15.47464 -15.30189 -15.22202 -15.02804 -14.62471 -14.47545 -13.96850 -13.72714 -13.69849 -13.42370 -12.91603 -12.85537 -12.57853 -12.52695 -12.41632 -12.29967 -12.15019 -11.99398 -11.91939 -11.77345 -11.66301 -11.51359 -11.36979 -11.31041 -10.75978 -10.64195 -10.34908 -9.86293 -9.66713 -8.76003 -7.84430 -5.29166 -0.70516 0.08897 0.52953 1.38408 1.45182 1.48035 1.56779 1.64833 1.97550 2.50480 2.93313 3.12914 3.30582 3.31752 3.63729 3.74677 3.85474 3.89746 3.97014 4.07692 4.09526 4.19486 4.20314 4.32424 4.44245 4.50954 4.64316 4.73437 4.73606 4.81627 4.85225 4.92015 4.95141 5.00631 5.06414 5.12360 5.25636 5.28265 5.41160 5.43567 5.44964 5.63514 5.75438 6.14559 6.34136 6.54572 6.89933 7.15766 7.86245 8.28837 9.19949 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.011107 B = 0.004441 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.376791 B = 6303.950463 C = 7408.982305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.605 5.605 3 C -0.259 4.259 4 H 0.063 0.937 5 C -0.044 4.044 6 N -0.933 5.933 7 Si 0.960 3.040 8 H -0.271 1.271 9 H -0.288 1.288 10 H -0.294 1.294 11 C 0.168 3.832 12 H 0.045 0.955 13 C -0.123 4.123 14 C -0.119 4.119 15 C 0.113 3.887 16 N -0.596 5.596 17 C 0.599 3.401 18 O -0.555 6.555 19 C -0.318 4.318 20 S 0.211 5.789 21 C 0.035 3.965 22 N -0.491 5.491 23 C 0.155 3.845 24 C -0.118 4.118 25 C -0.142 4.142 26 C -0.147 4.147 27 C 0.096 3.904 28 H -0.004 1.004 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.248 0.752 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.244 0.756 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.092 0.908 42 H 0.114 0.886 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.148 -12.066 -10.315 16.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.327 5.327 3 C -0.389 4.389 4 H 0.081 0.919 5 C -0.239 4.239 6 N -0.580 5.580 7 Si 0.789 3.211 8 H -0.196 1.196 9 H -0.214 1.214 10 H -0.222 1.222 11 C 0.060 3.940 12 H 0.064 0.936 13 C -0.163 4.163 14 C -0.158 4.158 15 C -0.008 4.008 16 N -0.327 5.327 17 C 0.386 3.614 18 O -0.435 6.435 19 C -0.442 4.442 20 S 0.468 5.532 21 C -0.260 4.260 22 N -0.204 5.204 23 C 0.018 3.982 24 C -0.139 4.139 25 C -0.180 4.180 26 C -0.185 4.185 27 C -0.029 4.029 28 H 0.015 0.985 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.260 0.740 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.597 -12.169 -10.549 16.748 hybrid contribution 0.718 1.105 0.580 1.440 sum 5.315 -11.063 -9.969 15.812 Atomic orbital electron populations 1.20534 0.82317 0.97014 0.96842 1.44068 1.02141 1.00612 1.85897 1.19464 0.97480 0.86355 1.35627 0.91894 1.25589 0.98490 1.01210 0.98650 1.70224 1.19963 1.27267 1.40547 0.85314 0.78025 0.80693 0.77079 1.19585 1.21450 1.22158 1.20649 0.94983 0.85509 0.92843 0.93620 1.21951 1.00228 0.95794 0.98337 1.21926 0.99962 0.95681 0.98222 1.21899 1.02684 0.93788 0.82427 1.48109 1.47868 1.18477 1.18296 1.16886 0.77997 0.85170 0.81362 1.90767 1.52864 1.19811 1.80037 1.25331 0.98531 1.12643 1.07652 1.84076 1.11031 1.37588 1.20494 1.29404 0.89944 1.02483 1.04156 1.65975 1.27476 1.12765 1.14207 1.19753 0.93660 0.93865 0.90930 1.20539 0.87885 1.06836 0.98659 1.22961 1.01015 0.94859 0.99131 1.23046 0.94797 0.97379 1.03257 1.22534 0.98021 0.81797 1.00576 0.98543 0.95061 0.95207 0.94225 0.93746 0.91958 0.92466 0.88224 0.89466 0.88849 0.73965 0.87517 0.86727 0.88940 0.86784 0.88047 0.90134 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.15 8.09 127.77 1.03 9.18 16 2 N -0.60 -28.41 2.82 -702.35 -1.98 -30.39 16 3 C -0.26 -13.70 9.60 84.03 0.81 -12.89 16 4 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 5 C -0.04 -2.37 5.05 84.86 0.43 -1.95 16 6 N -0.93 -53.10 10.70 21.65 0.23 -52.87 16 7 Si 0.96 43.94 29.58 68.60 2.03 45.97 16 8 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 9 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 C 0.17 6.48 2.75 45.07 0.12 6.61 16 12 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 13 C -0.12 -4.16 5.14 30.62 0.16 -4.00 16 14 C -0.12 -3.11 6.10 30.82 0.19 -2.92 16 15 C 0.11 2.90 6.45 86.51 0.56 3.46 16 16 N -0.60 -17.96 2.97 -822.77 -2.44 -20.40 16 17 C 0.60 19.46 7.01 86.45 0.61 20.07 16 18 O -0.55 -20.06 16.00 -4.31 -0.07 -20.12 16 19 C -0.32 -9.62 5.32 23.88 0.13 -9.49 16 20 S 0.21 5.03 20.48 -56.49 -1.16 3.87 16 21 C 0.03 0.74 12.22 130.60 1.60 2.33 16 22 N -0.49 -13.19 9.80 -190.40 -1.87 -15.06 16 23 C 0.16 4.61 6.42 42.09 0.27 4.88 16 24 C -0.12 -3.24 5.51 -11.52 -0.06 -3.30 16 25 C -0.14 -3.12 10.23 30.59 0.31 -2.81 16 26 C -0.15 -3.23 10.09 30.62 0.31 -2.92 16 27 C 0.10 3.11 5.32 86.36 0.46 3.57 16 28 H 0.00 -0.19 7.79 -2.38 -0.02 -0.21 16 29 H 0.03 1.58 6.74 -2.39 -0.02 1.56 16 30 H 0.03 1.14 6.35 -2.39 -0.02 1.12 16 31 H 0.25 13.78 8.31 -92.70 -0.77 13.00 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 2.05 7.71 -2.39 -0.02 2.03 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 38 H 0.24 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.11 3.16 7.72 -2.39 -0.02 3.14 16 40 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.10 2.32 7.74 -2.38 -0.02 2.30 16 44 H 0.08 2.68 4.32 -11.37 -0.05 2.63 16 45 H 0.08 2.46 6.49 -2.39 -0.02 2.45 16 Total: -1.00 -66.38 369.86 2.62 -63.76 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.96 Total: 15.43 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.91 Total: 9.81 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -6.05 Total: -118.72 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.07 Total: -20.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 5.03 SS G_CDS: -1.16 Total: 3.87 kcal Total: -66.38 2.62 -63.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027608387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.733 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds