Wall clock time and date at job start Tue Mar 31 2020 18:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00315 * 2 1 4 4 H 1.07990 * 120.00324 * 133.33684 * 3 2 1 5 5 C 1.38820 * 119.99454 * 313.34022 * 3 2 1 6 6 N 1.31615 * 119.99416 * 180.36722 * 5 3 2 7 7 Si 1.86800 * 120.00169 * 0.36855 * 5 3 2 8 8 H 1.48497 * 109.47174 * 86.16399 * 7 5 3 9 9 H 1.48496 * 109.46679 * 206.16294 * 7 5 3 10 10 H 1.48497 * 109.46750 * 326.16078 * 7 5 3 11 11 C 1.46498 * 119.99655 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49242 * 180.02562 * 11 2 1 13 13 C 1.53034 * 109.50197 * 60.00083 * 11 2 1 14 14 C 1.53032 * 109.54264 * 178.68161 * 13 11 2 15 15 C 1.53192 * 109.33848 * 61.35033 * 14 13 11 16 16 N 1.46935 * 108.76917 * 305.41384 * 15 14 13 17 17 C 1.34785 * 120.60428 * 233.53124 * 16 15 14 18 18 O 1.21679 * 119.99722 * 185.63206 * 17 16 15 19 19 C 1.46679 * 119.99973 * 5.63413 * 17 16 15 20 20 C 1.35665 * 126.13074 * 137.92654 * 19 17 16 21 21 N 1.30941 * 114.18771 * 179.82379 * 20 19 17 22 22 C 1.29430 * 117.36695 * 0.48422 * 21 20 19 23 23 C 1.50704 * 124.80238 * 179.76781 * 22 21 20 24 24 C 1.53002 * 117.50068 * 8.70424 * 23 22 21 25 25 C 1.52991 * 117.50013 * 300.04517 * 23 22 21 26 26 S 1.70949 * 110.38987 * 359.72758 * 22 21 20 27 27 C 1.46927 * 118.76395 * 53.55978 * 16 15 14 28 28 H 1.09002 * 109.47618 * 267.82682 * 1 2 3 29 29 H 1.09002 * 109.47273 * 27.82533 * 1 2 3 30 30 H 1.09004 * 109.47483 * 147.82235 * 1 2 3 31 31 H 0.96999 * 119.99660 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.45659 * 58.65998 * 13 11 2 33 33 H 1.09004 * 109.46039 * 298.70417 * 13 11 2 34 34 H 1.08998 * 109.50322 * 181.31852 * 14 13 11 35 35 H 1.09005 * 109.50027 * 301.38462 * 14 13 11 36 36 H 1.08994 * 109.58686 * 65.16940 * 15 14 13 37 37 H 1.09008 * 109.58852 * 185.59664 * 15 14 13 38 38 H 1.07996 * 122.90309 * 359.97438 * 20 19 17 39 39 H 1.09001 * 115.54721 * 154.37585 * 23 22 21 40 40 H 1.08997 * 117.49679 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.49559 * 145.01634 * 24 23 22 42 42 H 1.09004 * 117.49980 * 214.98343 * 25 23 22 43 43 H 1.09005 * 117.49626 * 359.97438 * 25 23 22 44 44 H 1.09001 * 109.58449 * 186.62222 * 27 16 15 45 45 H 1.09002 * 109.70477 * 66.26529 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 2.9755 1.3326 0.6802 5 6 1.7821 2.1995 -0.8744 6 7 2.4449 3.3366 -0.8794 7 14 0.3470 1.9495 -2.0438 8 1 -0.9194 2.3103 -1.3574 9 1 0.5260 2.8131 -3.2385 10 1 0.2939 0.5265 -2.4650 11 6 2.1974 -1.2688 0.0006 12 1 3.2691 -1.0700 0.0009 13 6 1.8281 -2.0724 -1.2484 14 6 2.6174 -3.3833 -1.2654 15 6 2.2502 -4.2127 -0.0309 16 7 2.4651 -3.3936 1.1699 17 6 3.2352 -3.8453 2.1797 18 8 3.3236 -3.2050 3.2107 19 6 3.9667 -5.1085 2.0359 20 6 5.2430 -5.3433 2.4316 21 7 5.6637 -6.5599 2.1919 22 6 4.8386 -7.3714 1.6123 23 6 5.1480 -8.8023 1.2544 24 6 6.4568 -9.3950 1.7805 25 6 6.3128 -9.0545 0.2951 26 16 3.3479 -6.5907 1.3111 27 6 1.8246 -2.0738 1.2495 28 1 -0.3634 -0.0390 1.0269 29 1 -0.3634 0.9088 -0.4797 30 1 -0.3634 -0.8698 -0.5473 31 1 2.1878 4.0450 -1.4901 32 1 2.0698 -1.4914 -2.1385 33 1 0.7604 -2.2914 -1.2367 34 1 2.3715 -3.9445 -2.1669 35 1 3.6853 -3.1653 -1.2527 36 1 1.2028 -4.5088 -0.0880 37 1 2.8811 -5.1004 0.0139 38 1 5.8578 -4.5926 2.9056 39 1 4.2865 -9.4665 1.1857 40 1 7.0939 -8.7501 2.3858 41 1 6.4564 -10.4492 2.0575 42 1 6.2178 -9.8850 -0.4046 43 1 6.8551 -8.1855 -0.0775 44 1 2.1748 -1.5507 2.1394 45 1 0.7422 -2.1929 1.2979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027655629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:49 Heat of formation + Delta-G solvation = 75.417568 kcal Electronic energy + Delta-G solvation = -26741.626359 eV Core-core repulsion = 23081.195847 eV Total energy + Delta-G solvation = -3660.430512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.52127 -39.72173 -37.69382 -37.11066 -35.36530 -32.48502 -31.65170 -30.91358 -29.40446 -26.99137 -26.22648 -25.19184 -23.97853 -22.87726 -22.75258 -21.90829 -21.06205 -19.24422 -18.78361 -18.39917 -17.03773 -16.85810 -16.48567 -15.90448 -15.58606 -15.32466 -14.75383 -14.61677 -14.46774 -14.27332 -14.02686 -13.74970 -13.49024 -12.84848 -12.70704 -12.60133 -12.56262 -12.47461 -12.13313 -11.93768 -11.82526 -11.46952 -11.25435 -11.12068 -11.05062 -10.86320 -10.60952 -10.48316 -10.17924 -10.10732 -9.91602 -9.84658 -9.50274 -9.38714 -9.01722 -8.69461 -8.48578 -6.76033 -5.97899 -3.61093 0.07318 0.83134 1.28570 2.29733 2.80635 3.10871 3.26282 3.38625 3.40555 3.44430 3.70938 4.33001 4.38422 4.42933 4.45457 4.53977 4.69635 4.94820 4.98991 5.09932 5.10390 5.17331 5.22960 5.30342 5.36320 5.41096 5.55468 5.58330 5.70653 5.76206 5.78804 5.87167 5.95170 6.03691 6.15914 6.26427 6.31721 6.40728 6.48373 6.61534 6.79190 6.84952 7.32033 7.42407 8.06769 8.10860 8.40373 8.92122 9.63841 10.06301 11.14510 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.002720 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708406 B =10289.928768 C =10554.191132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.605 5.605 3 C -0.274 4.274 4 H 0.079 0.921 5 C 0.035 3.965 6 N -0.908 5.908 7 Si 0.911 3.089 8 H -0.287 1.287 9 H -0.307 1.307 10 H -0.270 1.270 11 C 0.170 3.830 12 H 0.077 0.923 13 C -0.137 4.137 14 C -0.129 4.129 15 C 0.096 3.904 16 N -0.597 5.597 17 C 0.592 3.408 18 O -0.522 6.522 19 C -0.284 4.284 20 C 0.112 3.888 21 N -0.476 5.476 22 C 0.070 3.930 23 C -0.103 4.103 24 C -0.148 4.148 25 C -0.153 4.153 26 S 0.188 5.812 27 C 0.101 3.899 28 H 0.016 0.984 29 H 0.040 0.960 30 H 0.033 0.967 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.186 0.814 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -27.618 0.051 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.328 5.328 3 C -0.403 4.403 4 H 0.096 0.904 5 C -0.166 4.166 6 N -0.549 5.549 7 Si 0.743 3.257 8 H -0.215 1.215 9 H -0.236 1.236 10 H -0.195 1.195 11 C 0.062 3.938 12 H 0.095 0.905 13 C -0.177 4.177 14 C -0.168 4.168 15 C -0.028 4.028 16 N -0.330 5.330 17 C 0.377 3.623 18 O -0.399 6.399 19 C -0.408 4.408 20 C -0.044 4.044 21 N -0.190 5.190 22 C -0.204 4.204 23 C -0.124 4.124 24 C -0.187 4.187 25 C -0.192 4.192 26 S 0.446 5.554 27 C -0.022 4.022 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.203 0.797 39 H 0.146 0.854 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.113 0.887 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.894 -27.561 0.214 27.627 hybrid contribution -0.439 0.732 -0.289 0.901 sum 1.455 -26.829 -0.075 26.869 Atomic orbital electron populations 1.21424 0.85721 0.98693 0.98088 1.43936 1.00110 1.01631 1.87135 1.18784 1.15223 0.89905 1.16378 0.90380 1.25651 0.98042 0.96562 0.96311 1.69763 1.40664 1.05324 1.39110 0.86506 0.81847 0.77532 0.79768 1.21517 1.23580 1.19549 1.20747 0.97293 0.85484 0.90306 0.90452 1.22134 0.99417 0.95031 1.01095 1.21889 1.01438 0.97056 0.96389 1.22156 1.01593 0.93765 0.85252 1.48039 1.48482 1.19235 1.17233 1.16793 0.78779 0.83068 0.83647 1.90859 1.63526 1.57891 1.27622 1.25779 1.01070 0.99847 1.14083 1.22046 0.92240 0.92898 0.97211 1.66099 1.34921 1.02755 1.15257 1.26582 0.94621 0.99620 0.99560 1.20564 0.94924 0.88907 1.08033 1.23038 0.97199 1.01580 0.96927 1.23080 0.99099 1.03776 0.93285 1.83951 1.16931 1.01763 1.52710 1.22431 0.96784 0.80680 1.02325 0.96601 0.94169 0.94886 0.92590 0.91120 0.92404 0.90899 0.91341 0.90792 0.90317 0.79726 0.85364 0.87241 0.87970 0.87696 0.88111 0.88694 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.22 8.08 59.84 0.48 2.70 16 2 N -0.60 -14.08 2.39 -173.35 -0.41 -14.50 16 3 C -0.27 -7.66 9.91 -15.06 -0.15 -7.80 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 5 C 0.04 1.01 5.50 -17.43 -0.10 0.92 16 6 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 7 Si 0.91 22.44 24.60 -169.99 -4.18 18.25 16 8 H -0.29 -6.90 6.75 56.52 0.38 -6.51 16 9 H -0.31 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.31 6.77 56.52 0.38 -5.93 16 11 C 0.17 3.30 2.75 -67.81 -0.19 3.11 16 12 H 0.08 1.64 7.89 -51.93 -0.41 1.23 16 13 C -0.14 -2.22 5.11 -26.70 -0.14 -2.36 16 14 C -0.13 -1.60 6.08 -26.62 -0.16 -1.76 16 15 C 0.10 1.13 5.95 -3.71 -0.02 1.11 16 16 N -0.60 -9.00 2.97 -174.30 -0.52 -9.52 16 17 C 0.59 9.51 7.57 -12.85 -0.10 9.42 16 18 O -0.52 -10.27 16.52 5.21 0.09 -10.18 16 19 C -0.28 -3.71 5.66 -37.10 -0.21 -3.92 16 20 C 0.11 1.42 11.29 -18.85 -0.21 1.21 16 21 N -0.48 -5.63 9.98 -11.50 -0.11 -5.74 16 22 C 0.07 0.69 6.96 -13.29 -0.09 0.60 16 23 C -0.10 -0.71 6.28 -91.77 -0.58 -1.28 16 24 C -0.15 -0.93 10.12 -26.70 -0.27 -1.20 16 25 C -0.15 -0.90 10.24 -26.70 -0.27 -1.18 16 26 S 0.19 1.79 19.73 -107.50 -2.12 -0.34 16 27 C 0.10 1.77 5.78 -3.71 -0.02 1.75 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.04 0.92 2.75 -51.93 -0.14 0.78 16 30 H 0.03 0.61 6.46 -51.93 -0.34 0.27 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.90 6.73 -51.93 -0.35 0.55 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.81 3.65 -25.93 -0.09 0.72 16 38 H 0.19 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.13 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.11 0.86 7.84 -51.93 -0.41 0.45 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 1.90 7.04 -51.93 -0.37 1.54 16 45 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 LS Contribution 365.62 15.07 5.51 5.51 Total: -1.00 -33.03 365.62 -9.32 -42.35 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.32 Total: -0.10 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -2.02 Total: 1.29 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.27 Total: -56.78 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.18 Total: 18.25 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.12 Total: -0.34 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.03 -9.32 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027655629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.764 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds