Wall clock time and date at job start Tue Mar 31 2020 18:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00315 * 2 1 4 4 H 1.07990 * 120.00324 * 133.33684 * 3 2 1 5 5 C 1.38820 * 119.99454 * 313.34022 * 3 2 1 6 6 N 1.31615 * 119.99416 * 180.36722 * 5 3 2 7 7 Si 1.86800 * 120.00169 * 0.36855 * 5 3 2 8 8 H 1.48497 * 109.47174 * 86.16399 * 7 5 3 9 9 H 1.48496 * 109.46679 * 206.16294 * 7 5 3 10 10 H 1.48497 * 109.46750 * 326.16078 * 7 5 3 11 11 C 1.46498 * 119.99655 * 179.97438 * 2 1 3 12 12 H 1.09002 * 109.49242 * 180.02562 * 11 2 1 13 13 C 1.53034 * 109.50197 * 60.00083 * 11 2 1 14 14 C 1.53032 * 109.54264 * 178.68161 * 13 11 2 15 15 C 1.53192 * 109.33848 * 61.35033 * 14 13 11 16 16 N 1.46935 * 108.76917 * 305.41384 * 15 14 13 17 17 C 1.34785 * 120.60428 * 233.53124 * 16 15 14 18 18 O 1.21679 * 119.99722 * 185.63206 * 17 16 15 19 19 C 1.46679 * 119.99973 * 5.63413 * 17 16 15 20 20 C 1.35665 * 126.13074 * 137.92654 * 19 17 16 21 21 N 1.30941 * 114.18771 * 179.82379 * 20 19 17 22 22 C 1.29430 * 117.36695 * 0.48422 * 21 20 19 23 23 C 1.50704 * 124.80238 * 179.76781 * 22 21 20 24 24 C 1.53002 * 117.50068 * 8.70424 * 23 22 21 25 25 C 1.52991 * 117.50013 * 300.04517 * 23 22 21 26 26 S 1.70949 * 110.38987 * 359.72758 * 22 21 20 27 27 C 1.46927 * 118.76395 * 53.55978 * 16 15 14 28 28 H 1.09002 * 109.47618 * 267.82682 * 1 2 3 29 29 H 1.09002 * 109.47273 * 27.82533 * 1 2 3 30 30 H 1.09004 * 109.47483 * 147.82235 * 1 2 3 31 31 H 0.96999 * 119.99660 * 180.02562 * 6 5 3 32 32 H 1.09007 * 109.45659 * 58.65998 * 13 11 2 33 33 H 1.09004 * 109.46039 * 298.70417 * 13 11 2 34 34 H 1.08998 * 109.50322 * 181.31852 * 14 13 11 35 35 H 1.09005 * 109.50027 * 301.38462 * 14 13 11 36 36 H 1.08994 * 109.58686 * 65.16940 * 15 14 13 37 37 H 1.09008 * 109.58852 * 185.59664 * 15 14 13 38 38 H 1.07996 * 122.90309 * 359.97438 * 20 19 17 39 39 H 1.09001 * 115.54721 * 154.37585 * 23 22 21 40 40 H 1.08997 * 117.49679 * 0.02562 * 24 23 22 41 41 H 1.09000 * 117.49559 * 145.01634 * 24 23 22 42 42 H 1.09004 * 117.49980 * 214.98343 * 25 23 22 43 43 H 1.09005 * 117.49626 * 359.97438 * 25 23 22 44 44 H 1.09001 * 109.58449 * 186.62222 * 27 16 15 45 45 H 1.09002 * 109.70477 * 66.26529 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 2.9755 1.3326 0.6802 5 6 1.7821 2.1995 -0.8744 6 7 2.4449 3.3366 -0.8794 7 14 0.3470 1.9495 -2.0438 8 1 -0.9194 2.3103 -1.3574 9 1 0.5260 2.8131 -3.2385 10 1 0.2939 0.5265 -2.4650 11 6 2.1974 -1.2688 0.0006 12 1 3.2691 -1.0700 0.0009 13 6 1.8281 -2.0724 -1.2484 14 6 2.6174 -3.3833 -1.2654 15 6 2.2502 -4.2127 -0.0309 16 7 2.4651 -3.3936 1.1699 17 6 3.2352 -3.8453 2.1797 18 8 3.3236 -3.2050 3.2107 19 6 3.9667 -5.1085 2.0359 20 6 5.2430 -5.3433 2.4316 21 7 5.6637 -6.5599 2.1919 22 6 4.8386 -7.3714 1.6123 23 6 5.1480 -8.8023 1.2544 24 6 6.4568 -9.3950 1.7805 25 6 6.3128 -9.0545 0.2951 26 16 3.3479 -6.5907 1.3111 27 6 1.8246 -2.0738 1.2495 28 1 -0.3634 -0.0390 1.0269 29 1 -0.3634 0.9088 -0.4797 30 1 -0.3634 -0.8698 -0.5473 31 1 2.1878 4.0450 -1.4901 32 1 2.0698 -1.4914 -2.1385 33 1 0.7604 -2.2914 -1.2367 34 1 2.3715 -3.9445 -2.1669 35 1 3.6853 -3.1653 -1.2527 36 1 1.2028 -4.5088 -0.0880 37 1 2.8811 -5.1004 0.0139 38 1 5.8578 -4.5926 2.9056 39 1 4.2865 -9.4665 1.1857 40 1 7.0939 -8.7501 2.3858 41 1 6.4564 -10.4492 2.0575 42 1 6.2178 -9.8850 -0.4046 43 1 6.8551 -8.1855 -0.0775 44 1 2.1748 -1.5507 2.1394 45 1 0.7422 -2.1929 1.2979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027655629.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:48 Heat of formation + Delta-G solvation = 53.680994 kcal Electronic energy + Delta-G solvation = -26742.568928 eV Core-core repulsion = 23081.195847 eV Total energy + Delta-G solvation = -3661.373080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62164 -40.74228 -39.05931 -37.75315 -36.97129 -34.20363 -33.23158 -32.08743 -30.72821 -28.12324 -27.87368 -26.34021 -25.58575 -23.72073 -23.24666 -23.22196 -22.21473 -20.64010 -19.66343 -19.44706 -18.93200 -18.04748 -17.63245 -17.37938 -16.73617 -16.50553 -15.75520 -15.69701 -15.55364 -15.33878 -15.29217 -15.19942 -14.86281 -14.48558 -14.14735 -14.06099 -14.00614 -13.79418 -13.19534 -13.09585 -12.74691 -12.63491 -12.36217 -12.26057 -12.14794 -12.04802 -11.87944 -11.82399 -11.67385 -11.60060 -11.29130 -11.25939 -10.75264 -10.73258 -10.29435 -9.93857 -9.73576 -8.69169 -8.17966 -5.82267 -0.81728 -0.02336 0.42205 1.30753 1.31234 1.39662 1.53165 1.63393 1.96993 2.38675 2.83507 3.03286 3.08078 3.24816 3.37787 3.73588 3.86724 3.91210 3.91732 3.96141 4.06388 4.08305 4.18640 4.28796 4.31426 4.45175 4.46862 4.58312 4.68677 4.76189 4.81173 4.83147 4.88086 4.94980 4.95823 4.98294 5.08552 5.16864 5.30149 5.31640 5.36560 5.42771 5.93980 6.14778 6.15863 6.53367 6.83835 6.95587 7.52460 7.97004 8.96727 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.002720 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708406 B =10289.928768 C =10554.191132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.618 5.618 3 C -0.269 4.269 4 H 0.025 0.975 5 C -0.026 4.026 6 N -0.960 5.960 7 Si 0.982 3.018 8 H -0.274 1.274 9 H -0.315 1.315 10 H -0.242 1.242 11 C 0.169 3.831 12 H 0.040 0.960 13 C -0.129 4.129 14 C -0.121 4.121 15 C 0.093 3.907 16 N -0.596 5.596 17 C 0.590 3.410 18 O -0.573 6.573 19 C -0.320 4.320 20 C 0.111 3.889 21 N -0.499 5.499 22 C 0.072 3.928 23 C -0.114 4.114 24 C -0.151 4.151 25 C -0.143 4.143 26 S 0.259 5.741 27 C 0.115 3.885 28 H 0.025 0.975 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.087 0.913 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.085 0.915 44 H 0.056 0.944 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 -32.481 -2.325 32.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.343 5.343 3 C -0.399 4.399 4 H 0.043 0.957 5 C -0.222 4.222 6 N -0.603 5.603 7 Si 0.811 3.189 8 H -0.201 1.201 9 H -0.244 1.244 10 H -0.166 1.166 11 C 0.062 3.938 12 H 0.059 0.941 13 C -0.168 4.168 14 C -0.160 4.160 15 C -0.029 4.029 16 N -0.328 5.328 17 C 0.377 3.623 18 O -0.454 6.454 19 C -0.444 4.444 20 C -0.047 4.047 21 N -0.214 5.214 22 C -0.201 4.201 23 C -0.135 4.135 24 C -0.190 4.190 25 C -0.182 4.182 26 S 0.519 5.481 27 C -0.009 4.009 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.194 0.806 39 H 0.176 0.824 40 H 0.106 0.894 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.550 -32.502 -2.179 32.579 hybrid contribution 0.456 2.146 0.556 2.263 sum -0.094 -30.356 -1.623 30.399 Atomic orbital electron populations 1.21534 0.83789 0.99639 0.99247 1.44005 1.01333 1.01277 1.87665 1.18548 1.14116 0.92210 1.15012 0.95737 1.26486 1.01487 0.95916 0.98353 1.69939 1.43219 1.06574 1.40597 0.85355 0.78150 0.78701 0.76704 1.20117 1.24434 1.16568 1.20777 0.95022 0.84810 0.93234 0.94109 1.21994 1.01187 0.95972 0.97658 1.21868 1.00095 0.95536 0.98500 1.22476 1.03854 0.93509 0.83065 1.48091 1.47947 1.18460 1.18300 1.17196 0.78332 0.83733 0.83042 1.90821 1.65166 1.59735 1.29709 1.25513 1.01448 1.00567 1.16898 1.22065 0.92354 0.93404 0.96853 1.66172 1.35813 1.02576 1.16825 1.27256 0.94585 1.00660 0.97583 1.20918 0.96402 0.87381 1.08842 1.23089 0.96325 1.02431 0.97121 1.23157 0.97668 1.03978 0.93446 1.83494 1.15283 0.98349 1.50932 1.22023 0.97678 0.81674 0.99571 0.95651 0.95602 0.90955 0.92645 0.92824 0.90309 0.86794 0.92629 0.87697 0.88682 0.80586 0.82421 0.89419 0.85601 0.84954 0.89671 0.92521 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.04 8.08 127.77 1.03 5.07 16 2 N -0.62 -29.02 2.39 -702.36 -1.68 -30.69 16 3 C -0.27 -15.79 9.91 84.04 0.83 -14.96 16 4 H 0.02 1.67 8.06 -2.92 -0.02 1.65 16 5 C -0.03 -1.57 5.50 84.86 0.47 -1.10 16 6 N -0.96 -61.54 13.97 21.65 0.30 -61.24 16 7 Si 0.98 46.24 24.60 68.60 1.69 47.93 16 8 H -0.27 -12.24 6.75 99.48 0.67 -11.57 16 9 H -0.31 -15.12 7.11 99.48 0.71 -14.42 16 10 H -0.24 -10.19 6.77 99.48 0.67 -9.52 16 11 C 0.17 6.60 2.75 45.07 0.12 6.72 16 12 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 13 C -0.13 -3.82 5.11 30.62 0.16 -3.66 16 14 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 15 C 0.09 1.84 5.95 86.36 0.51 2.36 16 16 N -0.60 -17.50 2.97 -823.58 -2.45 -19.95 16 17 C 0.59 19.36 7.57 86.45 0.65 20.01 16 18 O -0.57 -24.05 16.52 -4.28 -0.07 -24.12 16 19 C -0.32 -8.24 5.66 23.88 0.14 -8.11 16 20 C 0.11 2.87 11.29 84.23 0.95 3.82 16 21 N -0.50 -11.50 9.98 -190.30 -1.90 -13.40 16 22 C 0.07 1.24 6.96 88.46 0.62 1.86 16 23 C -0.11 -1.17 6.28 -11.54 -0.07 -1.24 16 24 C -0.15 -1.49 10.12 30.62 0.31 -1.18 16 25 C -0.14 -1.22 10.24 30.61 0.31 -0.91 16 26 S 0.26 4.12 19.73 -56.49 -1.11 3.00 16 27 C 0.11 4.04 5.78 86.36 0.50 4.53 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.03 1.12 2.75 -2.39 -0.01 1.11 16 30 H 0.07 2.32 6.46 -2.39 -0.02 2.30 16 31 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 32 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.08 2.03 6.73 -2.39 -0.02 2.02 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.58 3.65 -18.91 -0.07 1.51 16 38 H 0.18 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.16 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 41 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.08 1.02 8.14 -2.38 -0.02 1.01 16 44 H 0.06 2.42 7.04 -2.39 -0.02 2.41 16 45 H 0.08 2.63 7.51 -2.39 -0.02 2.62 16 Total: -1.00 -79.10 365.62 2.38 -76.72 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.88 Total: 10.92 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 6.72 Total: 10.82 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -5.72 Total: -125.28 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.69 Total: 47.93 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.11 Total: 3.00 kcal Total: -79.10 2.38 -76.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027655629.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.402 kcal (2) G-P(sol) polarization free energy of solvation -79.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds