Wall clock time and date at job start Tue Mar 31 2020 18:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36937 * 120.00113 * 2 1 4 4 H 1.07996 * 120.00472 * 204.06583 * 3 2 1 5 5 C 1.38819 * 119.99684 * 24.07596 * 3 2 1 6 6 N 1.31620 * 120.00101 * 14.66635 * 5 3 2 7 7 Si 1.86803 * 119.99859 * 194.66683 * 5 3 2 8 8 H 1.48501 * 109.47017 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46842 * 119.99722 * 7 5 3 10 10 H 1.48495 * 109.46734 * 239.99922 * 7 5 3 11 11 C 1.46503 * 120.00376 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.50189 * 179.97438 * 11 2 1 13 13 C 1.53045 * 109.49415 * 300.00320 * 11 2 1 14 14 C 1.53042 * 109.53500 * 181.31411 * 13 11 2 15 15 C 1.53190 * 109.31311 * 298.63142 * 14 13 11 16 16 N 1.46929 * 108.77588 * 54.63873 * 15 14 13 17 17 C 1.34777 * 120.63258 * 126.36534 * 16 15 14 18 18 O 1.21629 * 119.99671 * 1.91295 * 17 16 15 19 19 C 1.47264 * 120.00131 * 181.91308 * 17 16 15 20 20 C 1.35201 * 123.14162 * 171.63400 * 19 17 16 21 21 S 1.70951 * 108.82632 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12551 * 359.97438 * 21 20 19 23 23 C 1.50706 * 124.71335 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.50381 * 8.64916 * 23 22 21 25 25 C 1.53000 * 117.49736 * 300.02420 * 23 22 21 26 26 N 1.28643 * 110.56510 * 0.02562 * 22 21 20 27 27 C 1.46925 * 118.73511 * 306.64261 * 16 15 14 28 28 H 1.08999 * 109.47299 * 272.74536 * 1 2 3 29 29 H 1.08995 * 109.46963 * 32.74892 * 1 2 3 30 30 H 1.09009 * 109.46870 * 152.74734 * 1 2 3 31 31 H 0.96995 * 120.00148 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.46134 * 61.29266 * 13 11 2 33 33 H 1.08999 * 109.46066 * 301.32875 * 13 11 2 34 34 H 1.09001 * 109.49828 * 178.68092 * 14 13 11 35 35 H 1.09007 * 109.49901 * 58.58627 * 14 13 11 36 36 H 1.08998 * 109.59041 * 294.84823 * 15 14 13 37 37 H 1.09003 * 109.70336 * 174.48807 * 15 14 13 38 38 H 1.07998 * 125.59071 * 0.23917 * 20 19 17 39 39 H 1.09003 * 115.54270 * 154.36246 * 23 22 21 40 40 H 1.09004 * 117.49572 * 359.97438 * 24 23 22 41 41 H 1.08990 * 117.50057 * 145.02058 * 24 23 22 42 42 H 1.09005 * 117.49394 * 214.98372 * 25 23 22 43 43 H 1.08995 * 117.50348 * 0.02562 * 25 23 22 44 44 H 1.09002 * 109.58233 * 173.14017 * 27 16 15 45 45 H 1.08996 * 109.58895 * 293.56996 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1592 1.2266 -0.3814 5 6 1.5461 2.3358 0.4905 6 7 0.4485 2.2467 1.2114 7 14 2.2917 4.0096 0.1272 8 1 3.5151 3.8382 -0.6968 9 1 1.3078 4.8395 -0.6132 10 1 2.6452 4.6814 1.4035 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8282 -2.0723 1.2485 14 6 2.6176 -3.3833 1.2655 15 6 2.2496 -4.2123 0.0309 16 7 2.4654 -3.3937 -1.1699 17 6 3.2366 -3.8446 -2.1791 18 8 3.7334 -4.9530 -2.1162 19 6 3.4777 -2.9954 -3.3578 20 6 4.3660 -3.3110 -4.3269 21 16 4.3502 -2.0791 -5.5121 22 6 3.1589 -1.2147 -4.6462 23 6 2.5661 0.1005 -5.0821 24 6 2.9150 0.6025 -6.4846 25 6 3.5214 1.2829 -5.2557 26 7 2.8386 -1.8419 -3.5696 27 6 1.8294 -2.0714 -1.2471 28 1 -0.3634 0.0492 1.0265 29 1 -0.3633 0.8643 -0.5559 30 1 -0.3633 -0.9137 -0.4706 31 1 0.0266 3.0501 1.5537 32 1 0.7606 -2.2914 1.2367 33 1 2.0698 -1.4915 2.1386 34 1 2.3716 -3.9444 2.1670 35 1 3.6855 -3.1652 1.2522 36 1 1.2021 -4.5080 0.0882 37 1 2.8784 -5.1015 -0.0154 38 1 4.9813 -4.1983 -4.3509 39 1 1.5655 0.3129 -4.7056 40 1 3.5737 -0.0183 -7.0920 41 1 2.1439 1.1452 -7.0312 42 1 3.1490 2.2734 -4.9938 43 1 4.5786 1.1096 -5.0551 44 1 2.1828 -1.5473 -2.1350 45 1 0.7469 -2.1889 -1.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027699387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:10 Heat of formation + Delta-G solvation = 79.413524 kcal Electronic energy + Delta-G solvation = -27754.746825 eV Core-core repulsion = 24094.489591 eV Total energy + Delta-G solvation = -3660.257234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.75568 -38.98657 -37.48673 -37.04942 -34.85129 -32.33031 -31.37318 -30.55241 -28.66974 -26.43257 -25.95024 -25.19385 -23.50599 -23.06605 -22.60842 -21.19466 -20.61597 -19.56298 -18.79169 -18.10497 -16.72382 -16.54443 -16.01082 -15.65548 -15.40431 -14.84390 -14.70226 -14.18331 -14.08609 -13.83389 -13.68930 -13.42173 -13.23891 -12.64875 -12.59052 -12.41966 -12.23031 -12.06240 -11.78192 -11.65701 -11.05428 -10.99423 -10.88363 -10.79937 -10.74141 -10.62839 -10.45311 -10.33460 -10.15607 -9.97777 -9.84868 -9.71436 -9.67292 -8.90708 -8.76556 -8.50401 -8.21856 -6.66469 -5.69463 -3.14509 0.44629 1.10413 1.50659 1.94339 3.25519 3.37212 3.39844 3.44913 3.46766 3.65636 3.85646 4.49570 4.58181 4.68052 4.75656 4.95413 5.08448 5.22871 5.30240 5.36004 5.40224 5.44475 5.52077 5.60301 5.69028 5.73728 5.84914 5.87701 5.88133 5.95892 6.06265 6.21065 6.32385 6.47963 6.52145 6.66693 6.81441 6.95954 7.08009 7.23467 7.38082 7.45125 7.75040 7.75965 7.84855 8.33081 8.45243 9.27446 9.91201 10.41789 11.35725 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.005618 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.094809 B = 4982.469970 C = 7637.612039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.588 5.588 3 C -0.247 4.247 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.899 3.101 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.292 1.292 11 C 0.172 3.828 12 H 0.058 0.942 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.111 3.889 16 N -0.581 5.581 17 C 0.590 3.410 18 O -0.553 6.553 19 C 0.023 3.977 20 C -0.233 4.233 21 S 0.198 5.802 22 C 0.066 3.934 23 C -0.086 4.086 24 C -0.171 4.171 25 C -0.154 4.154 26 N -0.421 5.421 27 C 0.040 3.960 28 H 0.026 0.974 29 H 0.041 0.959 30 H -0.001 1.001 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.188 0.812 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.099 0.901 44 H 0.161 0.839 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.345 -7.819 -14.129 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.310 5.310 3 C -0.377 4.377 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.730 3.270 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.063 3.937 12 H 0.077 0.923 13 C -0.174 4.174 14 C -0.169 4.169 15 C -0.012 4.012 16 N -0.311 5.311 17 C 0.375 3.625 18 O -0.433 6.433 19 C -0.111 4.111 20 C -0.375 4.375 21 S 0.456 5.544 22 C -0.212 4.212 23 C -0.108 4.108 24 C -0.209 4.209 25 C -0.193 4.193 26 N -0.136 5.136 27 C -0.084 4.084 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.205 0.795 39 H 0.158 0.842 40 H 0.114 0.886 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.117 0.883 44 H 0.177 0.823 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.610 -7.878 -14.582 17.498 hybrid contribution -0.045 0.414 1.094 1.171 sum 5.565 -7.464 -13.488 16.389 Atomic orbital electron populations 1.20732 0.82882 0.95668 0.98912 1.43806 1.01594 0.99949 1.85618 1.19207 0.98850 0.85510 1.34148 0.91671 1.24985 0.98248 0.98333 0.98019 1.70081 1.21348 1.27086 1.36541 0.86261 0.78447 0.84745 0.77587 1.20341 1.21671 1.21893 1.20479 0.96005 0.86349 0.90905 0.92323 1.22158 0.99326 0.94780 1.01151 1.21913 1.00931 0.97408 0.96630 1.21655 1.01213 0.94263 0.84035 1.48050 1.47111 1.19334 1.16654 1.17116 0.78827 0.85013 0.81551 1.90754 1.52280 1.20097 1.80154 1.20474 0.98362 0.93785 0.98515 1.26506 1.05649 1.06459 0.98905 1.82635 1.36709 1.11517 1.23499 1.26594 0.99301 1.01081 0.94200 1.20466 1.01446 0.88474 1.00391 1.23153 1.03998 1.03729 0.90062 1.23150 0.98861 0.96979 1.00307 1.66700 1.25224 1.05910 1.15728 1.23936 0.97529 0.81255 1.05705 0.95533 0.94033 0.98277 0.93922 0.92610 0.91688 0.91371 0.91987 0.91661 0.89573 0.79471 0.84239 0.88573 0.87196 0.87027 0.88253 0.82341 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.06 59.84 0.48 4.45 16 2 N -0.59 -14.54 2.81 -173.60 -0.49 -15.03 16 3 C -0.25 -6.71 9.56 -15.06 -0.14 -6.85 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.00 0.07 5.04 -17.43 -0.09 -0.02 16 6 N -0.91 -26.17 10.89 55.49 0.60 -25.57 16 7 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 C 0.17 3.64 2.73 -68.03 -0.19 3.45 16 12 H 0.06 1.33 7.87 -51.93 -0.41 0.92 16 13 C -0.13 -2.56 5.15 -26.69 -0.14 -2.70 16 14 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 15 C 0.11 1.73 6.43 -3.71 -0.02 1.71 16 16 N -0.58 -10.26 2.98 -174.36 -0.52 -10.78 16 17 C 0.59 10.56 7.67 -12.59 -0.10 10.47 16 18 O -0.55 -10.63 16.15 5.25 0.08 -10.54 16 19 C 0.02 0.37 6.54 -84.53 -0.55 -0.19 16 20 C -0.23 -3.00 10.62 29.65 0.31 -2.69 16 21 S 0.20 2.00 21.65 -107.50 -2.33 -0.32 16 22 C 0.07 0.87 6.99 -13.61 -0.10 0.77 16 23 C -0.09 -0.99 6.33 -91.77 -0.58 -1.57 16 24 C -0.17 -1.39 10.01 -26.73 -0.27 -1.66 16 25 C -0.15 -1.54 10.23 -26.73 -0.27 -1.82 16 26 N -0.42 -6.78 6.65 -8.51 -0.06 -6.84 16 27 C 0.04 0.75 5.56 -3.93 -0.02 0.73 16 28 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.04 1.08 7.30 -51.93 -0.38 0.70 16 30 H 0.00 -0.03 6.34 -51.92 -0.33 -0.36 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 32 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 33 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 38 H 0.19 2.12 8.04 -52.49 -0.42 1.70 16 39 H 0.14 1.72 8.14 -51.93 -0.42 1.30 16 40 H 0.10 0.67 7.21 -51.93 -0.37 0.29 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.16 3.13 3.56 -92.23 -0.33 2.80 16 45 H 0.06 1.13 6.47 -51.93 -0.34 0.79 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -31.56 369.30 -10.65 -42.22 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.66 Total: 2.90 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -1.83 Total: 1.89 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.46 Total: -58.21 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -2.33 Total: -0.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.56 -10.65 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027699387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.633 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds