Wall clock time and date at job start Tue Mar 31 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36937 * 120.00113 * 2 1 4 4 H 1.07996 * 120.00472 * 204.06583 * 3 2 1 5 5 C 1.38819 * 119.99684 * 24.07596 * 3 2 1 6 6 N 1.31620 * 120.00101 * 14.66635 * 5 3 2 7 7 Si 1.86803 * 119.99859 * 194.66683 * 5 3 2 8 8 H 1.48501 * 109.47017 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46842 * 119.99722 * 7 5 3 10 10 H 1.48495 * 109.46734 * 239.99922 * 7 5 3 11 11 C 1.46503 * 120.00376 * 180.02562 * 2 1 3 12 12 H 1.09000 * 109.50189 * 179.97438 * 11 2 1 13 13 C 1.53045 * 109.49415 * 300.00320 * 11 2 1 14 14 C 1.53042 * 109.53500 * 181.31411 * 13 11 2 15 15 C 1.53190 * 109.31311 * 298.63142 * 14 13 11 16 16 N 1.46929 * 108.77588 * 54.63873 * 15 14 13 17 17 C 1.34777 * 120.63258 * 126.36534 * 16 15 14 18 18 O 1.21629 * 119.99671 * 1.91295 * 17 16 15 19 19 C 1.47264 * 120.00131 * 181.91308 * 17 16 15 20 20 C 1.35201 * 123.14162 * 171.63400 * 19 17 16 21 21 S 1.70951 * 108.82632 * 179.97438 * 20 19 17 22 22 C 1.70774 * 91.12551 * 359.97438 * 21 20 19 23 23 C 1.50706 * 124.71335 * 179.97438 * 22 21 20 24 24 C 1.52995 * 117.50381 * 8.64916 * 23 22 21 25 25 C 1.53000 * 117.49736 * 300.02420 * 23 22 21 26 26 N 1.28643 * 110.56510 * 0.02562 * 22 21 20 27 27 C 1.46925 * 118.73511 * 306.64261 * 16 15 14 28 28 H 1.08999 * 109.47299 * 272.74536 * 1 2 3 29 29 H 1.08995 * 109.46963 * 32.74892 * 1 2 3 30 30 H 1.09009 * 109.46870 * 152.74734 * 1 2 3 31 31 H 0.96995 * 120.00148 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.46134 * 61.29266 * 13 11 2 33 33 H 1.08999 * 109.46066 * 301.32875 * 13 11 2 34 34 H 1.09001 * 109.49828 * 178.68092 * 14 13 11 35 35 H 1.09007 * 109.49901 * 58.58627 * 14 13 11 36 36 H 1.08998 * 109.59041 * 294.84823 * 15 14 13 37 37 H 1.09003 * 109.70336 * 174.48807 * 15 14 13 38 38 H 1.07998 * 125.59071 * 0.23917 * 20 19 17 39 39 H 1.09003 * 115.54270 * 154.36246 * 23 22 21 40 40 H 1.09004 * 117.49572 * 359.97438 * 24 23 22 41 41 H 1.08990 * 117.50057 * 145.02058 * 24 23 22 42 42 H 1.09005 * 117.49394 * 214.98372 * 25 23 22 43 43 H 1.08995 * 117.50348 * 0.02562 * 25 23 22 44 44 H 1.09002 * 109.58233 * 173.14017 * 27 16 15 45 45 H 1.08996 * 109.58895 * 293.56996 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1592 1.2266 -0.3814 5 6 1.5461 2.3358 0.4905 6 7 0.4485 2.2467 1.2114 7 14 2.2917 4.0096 0.1272 8 1 3.5151 3.8382 -0.6968 9 1 1.3078 4.8395 -0.6132 10 1 2.6452 4.6814 1.4035 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8282 -2.0723 1.2485 14 6 2.6176 -3.3833 1.2655 15 6 2.2496 -4.2123 0.0309 16 7 2.4654 -3.3937 -1.1699 17 6 3.2366 -3.8446 -2.1791 18 8 3.7334 -4.9530 -2.1162 19 6 3.4777 -2.9954 -3.3578 20 6 4.3660 -3.3110 -4.3269 21 16 4.3502 -2.0791 -5.5121 22 6 3.1589 -1.2147 -4.6462 23 6 2.5661 0.1005 -5.0821 24 6 2.9150 0.6025 -6.4846 25 6 3.5214 1.2829 -5.2557 26 7 2.8386 -1.8419 -3.5696 27 6 1.8294 -2.0714 -1.2471 28 1 -0.3634 0.0492 1.0265 29 1 -0.3633 0.8643 -0.5559 30 1 -0.3633 -0.9137 -0.4706 31 1 0.0266 3.0501 1.5537 32 1 0.7606 -2.2914 1.2367 33 1 2.0698 -1.4915 2.1386 34 1 2.3716 -3.9444 2.1670 35 1 3.6855 -3.1652 1.2522 36 1 1.2021 -4.5080 0.0882 37 1 2.8784 -5.1015 -0.0154 38 1 4.9813 -4.1983 -4.3509 39 1 1.5655 0.3129 -4.7056 40 1 3.5737 -0.0183 -7.0920 41 1 2.1439 1.1452 -7.0312 42 1 3.1490 2.2734 -4.9938 43 1 4.5786 1.1096 -5.0551 44 1 2.1828 -1.5473 -2.1350 45 1 0.7469 -2.1889 -1.2960 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027699387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:09 Heat of formation + Delta-G solvation = 61.641068 kcal Electronic energy + Delta-G solvation = -27755.517497 eV Core-core repulsion = 24094.489591 eV Total energy + Delta-G solvation = -3661.027906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96344 -40.21385 -38.95573 -37.97039 -36.63483 -33.90402 -33.15098 -31.59806 -30.40705 -28.01287 -27.58477 -26.44957 -25.22205 -24.37607 -23.31461 -22.61612 -21.69740 -20.98624 -20.11129 -19.35508 -18.68875 -17.62704 -17.31374 -16.96495 -16.71961 -16.54180 -15.72192 -15.69521 -15.55716 -15.18913 -14.94408 -14.91091 -14.56013 -14.43015 -14.03319 -13.75369 -13.67698 -13.22230 -12.98730 -12.88444 -12.77262 -12.53978 -12.39901 -12.30997 -12.14717 -12.01503 -11.89886 -11.84046 -11.68582 -11.51624 -11.47312 -11.27988 -10.66988 -10.61511 -10.01240 -9.87284 -9.62446 -8.68808 -7.80193 -5.28024 -0.55678 0.18836 0.51916 0.79109 1.45983 1.47158 1.57851 1.97088 2.18839 2.52549 2.69915 2.99963 3.32724 3.44839 3.71823 3.82211 3.93454 3.97819 4.03158 4.07932 4.12890 4.16811 4.27134 4.38849 4.41606 4.51457 4.60668 4.74638 4.74841 4.86021 4.90658 4.98805 5.00428 5.04346 5.09736 5.20393 5.20601 5.27043 5.43117 5.47853 5.64662 5.69824 5.84166 6.22928 6.36373 6.48745 7.00295 7.17677 7.88944 8.34965 9.23281 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.005618 C = 0.003665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.094809 B = 4982.469970 C = 7637.612039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.600 5.600 3 C -0.255 4.255 4 H 0.061 0.939 5 C -0.048 4.048 6 N -0.936 5.936 7 Si 0.963 3.037 8 H -0.266 1.266 9 H -0.287 1.287 10 H -0.295 1.295 11 C 0.172 3.828 12 H 0.039 0.961 13 C -0.126 4.126 14 C -0.118 4.118 15 C 0.109 3.891 16 N -0.586 5.586 17 C 0.586 3.414 18 O -0.572 6.572 19 C -0.014 4.014 20 C -0.236 4.236 21 S 0.309 5.691 22 C 0.042 3.958 23 C -0.115 4.115 24 C -0.138 4.138 25 C -0.162 4.162 26 N -0.460 5.460 27 C 0.054 3.946 28 H 0.001 0.999 29 H 0.017 0.983 30 H 0.025 0.975 31 H 0.247 0.753 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.202 0.798 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.162 0.838 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -8.273 -16.518 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.322 5.322 3 C -0.385 4.385 4 H 0.079 0.921 5 C -0.243 4.243 6 N -0.583 5.583 7 Si 0.791 3.209 8 H -0.190 1.190 9 H -0.214 1.214 10 H -0.223 1.223 11 C 0.064 3.936 12 H 0.057 0.943 13 C -0.166 4.166 14 C -0.156 4.156 15 C -0.013 4.013 16 N -0.316 5.316 17 C 0.373 3.627 18 O -0.453 6.453 19 C -0.148 4.148 20 C -0.379 4.379 21 S 0.568 5.432 22 C -0.234 4.234 23 C -0.137 4.137 24 C -0.176 4.176 25 C -0.201 4.201 26 N -0.175 5.175 27 C -0.070 4.070 28 H 0.020 0.980 29 H 0.036 0.964 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.219 0.781 39 H 0.138 0.862 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.177 0.823 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.065 -8.354 -16.994 20.212 hybrid contribution -0.415 0.518 1.723 1.846 sum 6.650 -7.836 -15.271 18.408 Atomic orbital electron populations 1.20433 0.82888 0.95793 0.97164 1.43953 1.01768 1.00724 1.85796 1.19427 0.98807 0.86743 1.33521 0.92111 1.25707 0.98890 1.01594 0.98146 1.70234 1.22714 1.27623 1.37726 0.85263 0.78082 0.80345 0.77162 1.19022 1.21410 1.22276 1.20557 0.94421 0.85618 0.93024 0.94309 1.21997 0.99784 0.95986 0.98801 1.21826 0.99880 0.95725 0.98183 1.21785 1.02238 0.94108 0.83179 1.48080 1.47220 1.18842 1.17478 1.17437 0.78167 0.85055 0.82046 1.90722 1.52986 1.20865 1.80772 1.20305 1.00689 0.94591 0.99176 1.26887 1.04333 1.07678 0.98987 1.82158 1.33127 1.07983 1.19939 1.26861 1.00533 1.01672 0.94379 1.20505 1.01007 0.88642 1.03541 1.23296 1.03605 1.02094 0.88597 1.23232 0.98713 0.96309 1.01855 1.66479 1.26756 1.06549 1.17717 1.23646 0.96956 0.81910 1.04522 0.98024 0.96398 0.95664 0.94337 0.92673 0.94006 0.88350 0.92518 0.90298 0.88891 0.78093 0.86211 0.86719 0.85424 0.87344 0.87899 0.82290 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 8.06 127.77 1.03 10.20 16 2 N -0.60 -30.61 2.81 -703.14 -1.97 -32.59 16 3 C -0.25 -14.17 9.56 84.04 0.80 -13.37 16 4 H 0.06 3.37 7.84 -2.91 -0.02 3.35 16 5 C -0.05 -2.71 5.04 84.86 0.43 -2.28 16 6 N -0.94 -55.62 10.89 21.65 0.24 -55.38 16 7 Si 0.96 44.89 29.58 68.60 2.03 46.92 16 8 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 9 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 11 C 0.17 7.47 2.73 44.93 0.12 7.59 16 12 H 0.04 1.82 7.87 -2.39 -0.02 1.80 16 13 C -0.13 -4.86 5.15 30.62 0.16 -4.70 16 14 C -0.12 -3.57 6.08 30.67 0.19 -3.39 16 15 C 0.11 3.30 6.43 86.36 0.56 3.85 16 16 N -0.59 -20.70 2.98 -823.78 -2.45 -23.15 16 17 C 0.59 20.92 7.67 86.62 0.66 21.59 16 18 O -0.57 -21.70 16.15 -4.12 -0.07 -21.77 16 19 C -0.01 -0.43 6.54 40.55 0.27 -0.16 16 20 C -0.24 -5.63 10.62 67.12 0.71 -4.92 16 21 S 0.31 5.29 21.65 -56.49 -1.22 4.07 16 22 C 0.04 1.06 6.99 88.58 0.62 1.68 16 23 C -0.12 -2.54 6.33 -11.54 -0.07 -2.62 16 24 C -0.14 -1.84 10.01 30.59 0.31 -1.54 16 25 C -0.16 -3.00 10.23 30.59 0.31 -2.68 16 26 N -0.46 -14.80 6.65 -180.83 -1.20 -16.00 16 27 C 0.05 2.10 5.56 86.22 0.48 2.58 16 28 H 0.00 0.08 7.45 -2.39 -0.02 0.06 16 29 H 0.02 0.95 7.30 -2.39 -0.02 0.93 16 30 H 0.02 1.11 6.34 -2.38 -0.02 1.09 16 31 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.05 2.12 7.72 -2.39 -0.02 2.10 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 2.74 7.01 -2.39 -0.02 2.72 16 38 H 0.20 4.09 8.04 -2.91 -0.02 4.07 16 39 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.11 1.09 7.21 -2.39 -0.02 1.08 16 41 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.16 6.45 3.56 -81.96 -0.29 6.15 16 45 H 0.05 1.97 6.47 -2.39 -0.02 1.96 16 Total: -1.00 -70.37 369.30 2.64 -67.74 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.72 Total: 18.33 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.57 Total: 11.84 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.39 Total: -127.12 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.07 Total: -21.77 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.22 Total: 4.07 kcal Total: -70.37 2.64 -67.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027699387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.378 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds