Wall clock time and date at job start Tue Mar 31 2020 18:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00224 * 2 1 4 4 C 1.46904 * 110.99694 * 123.95290 * 2 1 3 5 5 C 1.50703 * 109.46808 * 163.92410 * 4 2 1 6 6 C 1.37471 * 123.35647 * 105.26140 * 5 4 2 7 7 C 1.33809 * 115.10464 * 180.27135 * 6 5 4 8 8 S 1.70615 * 110.95650 * 359.74075 * 7 6 5 9 9 C 1.36651 * 123.34724 * 285.05380 * 5 4 2 10 10 C 1.46575 * 125.46145 * 0.02562 * 9 5 4 11 11 O 1.21706 * 120.00157 * 356.69187 * 10 9 5 12 12 N 1.34778 * 120.00027 * 176.69203 * 10 9 5 13 13 C 1.47870 * 126.94507 * 359.97438 * 12 10 9 14 14 C 1.58429 * 104.82928 * 182.30307 * 13 12 10 15 15 H 1.09010 * 116.62260 * 159.51751 * 14 13 12 16 16 C 1.57428 * 99.62506 * 32.32655 * 14 13 12 17 17 C 1.49292 * 126.94533 * 180.02562 * 12 10 9 18 18 H 1.09005 * 116.15328 * 15.83779 * 17 12 10 19 19 C 1.56020 * 104.09352 * 246.69722 * 17 12 10 20 20 N 1.47859 * 105.10525 * 287.92010 * 19 17 12 21 21 C 1.36932 * 126.94758 * 181.97874 * 20 19 17 22 22 H 1.07997 * 120.00622 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99774 * 0.02562 * 21 20 19 24 24 N 1.31613 * 120.00319 * 359.72307 * 23 21 20 25 25 Si 1.86806 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46858 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47320 * 119.99990 * 25 23 21 28 28 H 1.48492 * 109.47178 * 240.00003 * 25 23 21 29 29 H 1.09001 * 109.47344 * 296.04786 * 1 2 3 30 30 H 1.09006 * 109.46857 * 56.04368 * 1 2 3 31 31 H 1.08996 * 109.47569 * 176.04583 * 1 2 3 32 32 H 1.09003 * 109.47578 * 181.80122 * 3 2 1 33 33 H 1.09005 * 109.47414 * 301.79985 * 3 2 1 34 34 H 1.09003 * 109.47199 * 61.80475 * 3 2 1 35 35 H 1.08995 * 109.47517 * 43.92441 * 4 2 1 36 36 H 1.09004 * 109.47010 * 283.91871 * 4 2 1 37 37 H 1.08003 * 122.44819 * 0.03693 * 6 5 4 38 38 H 1.08003 * 124.52742 * 179.76928 * 7 6 5 39 39 H 1.08996 * 110.31589 * 300.91250 * 13 12 10 40 40 H 1.08998 * 110.31207 * 62.99599 * 13 12 10 41 41 H 1.09005 * 112.53685 * 192.40162 * 16 14 13 42 42 H 1.09002 * 112.31503 * 64.86822 * 16 14 13 43 43 H 1.08996 * 110.31536 * 169.00738 * 19 17 12 44 44 H 1.09006 * 110.31491 * 46.82882 * 19 17 12 45 45 H 0.97000 * 120.00361 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4500 -1.0810 0.9011 6 6 4.4777 -0.4395 1.5508 7 6 5.7062 -0.8461 1.2102 8 16 5.6362 -2.0844 0.0386 9 6 3.8785 -2.0357 0.0223 10 6 3.0122 -2.8796 -0.8058 11 8 1.8025 -2.8005 -0.6980 12 7 3.5551 -3.7431 -1.6867 13 6 4.9946 -3.9637 -1.9430 14 6 5.0394 -5.0357 -3.1087 15 1 5.9630 -5.0927 -3.6848 16 6 3.7294 -4.6356 -3.8846 17 6 2.8247 -4.6695 -2.6017 18 1 1.7646 -4.4629 -2.7485 19 6 3.1833 -6.0912 -2.0684 20 7 4.5978 -6.2987 -2.4454 21 6 5.3522 -7.4202 -2.2257 22 1 6.3819 -7.4506 -2.5499 23 6 4.7933 -8.5182 -1.5861 24 7 3.5401 -8.4793 -1.1860 25 14 5.8225 -10.0479 -1.2856 26 1 7.1916 -9.8362 -1.8203 27 1 5.8973 -10.3156 0.1732 28 1 5.1971 -11.2077 -1.9702 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0846 1.3425 -0.0323 33 1 1.6201 1.9047 -0.8734 34 1 1.6724 1.8846 0.9057 35 1 1.4346 -1.6949 1.2409 36 1 1.8948 -0.1775 2.0496 37 1 4.3062 0.3386 2.2799 38 1 6.6201 -0.4445 1.6223 39 1 5.4680 -3.0366 -2.2660 40 1 5.4842 -4.3457 -1.0472 41 1 3.4345 -5.3839 -4.6203 42 1 3.7943 -3.6382 -4.3196 43 1 2.5513 -6.8431 -2.5410 44 1 3.0710 -6.1283 -0.9848 45 1 3.1497 -9.2464 -0.7387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032428565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:51 Heat of formation + Delta-G solvation = 75.353080 kcal Electronic energy + Delta-G solvation = -27707.827240 eV Core-core repulsion = 24047.393932 eV Total energy + Delta-G solvation = -3660.433308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00061 -38.92738 -37.18326 -36.21460 -33.61110 -31.65996 -30.22811 -29.06489 -28.47965 -27.54140 -27.34345 -25.22005 -24.22482 -23.32441 -21.54957 -21.46341 -19.88641 -19.12969 -18.12874 -17.85297 -16.62787 -15.80067 -15.70541 -15.49004 -15.20988 -14.89948 -14.66577 -14.26283 -14.18044 -13.80283 -13.29017 -13.17996 -12.82453 -12.58426 -12.38461 -12.20546 -12.08120 -11.87309 -11.70360 -11.58054 -11.53743 -11.37875 -11.30071 -11.00328 -10.94570 -10.84814 -10.61306 -10.49549 -10.15315 -10.04948 -9.64049 -9.37509 -8.70876 -8.66703 -8.43570 -8.19320 -7.89087 -6.92547 -5.77161 -3.11676 0.71957 1.67494 2.09072 2.48132 3.36891 3.41976 3.42310 3.45257 3.65438 4.18897 4.41625 4.85721 4.91800 5.07380 5.13194 5.15373 5.22837 5.32401 5.34323 5.39453 5.46769 5.54106 5.59066 5.62598 5.63018 5.79642 5.84162 5.86111 5.89677 6.01576 6.05429 6.14388 6.29250 6.36985 6.39884 6.41901 6.52945 6.59699 6.73041 7.10533 7.16713 7.42810 7.51092 7.72815 8.08683 8.13658 8.68376 9.09743 9.70624 10.39587 11.34799 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003694 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.651567 B = 7577.634243 C = 8164.273271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.527 5.527 3 C 0.024 3.976 4 C 0.119 3.881 5 C -0.038 4.038 6 C -0.144 4.144 7 C -0.262 4.262 8 S 0.223 5.777 9 C -0.226 4.226 10 C 0.602 3.398 11 O -0.526 6.526 12 N -0.605 5.605 13 C 0.069 3.931 14 C 0.148 3.852 15 H 0.109 0.891 16 C -0.150 4.150 17 C 0.104 3.896 18 H 0.114 0.886 19 C 0.173 3.827 20 N -0.596 5.596 21 C -0.232 4.232 22 H 0.082 0.918 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.017 0.983 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.020 0.980 35 H 0.099 0.901 36 H 0.036 0.964 37 H 0.134 0.866 38 H 0.161 0.839 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 18.144 1.631 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.250 5.250 3 C -0.124 4.124 4 C -0.010 4.010 5 C -0.054 4.054 6 C -0.176 4.176 7 C -0.399 4.399 8 S 0.493 5.507 9 C -0.347 4.347 10 C 0.390 3.610 11 O -0.404 6.404 12 N -0.338 5.338 13 C -0.058 4.058 14 C 0.038 3.962 15 H 0.127 0.873 16 C -0.190 4.190 17 C 0.002 3.998 18 H 0.132 0.868 19 C 0.048 3.952 20 N -0.320 5.320 21 C -0.360 4.360 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.564 5.564 25 Si 0.742 3.258 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.036 0.964 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.117 0.883 36 H 0.054 0.946 37 H 0.152 0.848 38 H 0.179 0.821 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.782 16.889 0.698 16.997 hybrid contribution -0.558 0.587 2.058 2.212 sum 1.224 17.476 2.757 17.734 Atomic orbital electron populations 1.22316 0.86896 1.02892 0.99423 1.61758 1.07847 1.12545 1.42858 1.22422 1.00890 0.89222 0.99896 1.20701 0.90596 0.99184 0.90561 1.19190 0.96382 0.94523 0.95282 1.19776 0.91163 1.03167 1.03477 1.25492 1.02147 1.05762 1.06513 1.83645 1.01072 1.31205 1.34768 1.24567 0.96786 1.05999 1.07372 1.16400 0.86800 0.78684 0.79076 1.90756 1.13295 1.68476 1.67923 1.48996 1.08308 1.38339 1.38187 1.23877 0.81099 0.99139 1.01662 1.23663 0.96003 0.85840 0.90654 0.87328 1.24177 0.97745 1.00628 0.96405 1.24265 0.96284 0.90750 0.88539 0.86805 1.21948 0.85429 0.89097 0.98697 1.45285 1.08749 1.10913 1.67022 1.19094 0.94080 0.90101 1.32736 0.90054 1.24818 0.96406 0.98372 1.00565 1.69926 1.12086 1.30163 1.44248 0.86057 0.79126 0.83037 0.77568 1.20434 1.21796 1.21738 0.96413 0.91815 0.90533 0.91570 0.91752 0.96193 0.88332 0.94584 0.84832 0.82095 0.92536 0.90643 0.89557 0.91582 0.92550 0.93447 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.54 60.06 0.57 0.97 16 2 N -0.53 -7.27 4.54 -252.72 -1.15 -8.42 16 3 C 0.02 0.27 9.40 60.06 0.56 0.84 16 4 C 0.12 1.68 4.34 -4.97 -0.02 1.65 16 5 C -0.04 -0.56 4.66 -105.47 -0.49 -1.05 16 6 C -0.14 -1.76 9.54 -41.42 -0.39 -2.15 16 7 C -0.26 -3.03 10.92 29.18 0.32 -2.71 16 8 S 0.22 3.02 18.69 -107.50 -2.01 1.01 16 9 C -0.23 -3.73 6.39 -36.79 -0.24 -3.96 16 10 C 0.60 11.63 7.85 -12.90 -0.10 11.53 16 11 O -0.53 -11.06 14.58 5.18 0.08 -10.98 16 12 N -0.60 -11.50 2.95 -156.79 -0.46 -11.97 16 13 C 0.07 1.21 4.69 -0.29 0.00 1.21 16 14 C 0.15 2.72 5.63 -60.95 -0.34 2.38 16 15 H 0.11 1.77 8.14 -51.92 -0.42 1.34 16 16 C -0.15 -2.53 6.85 -22.14 -0.15 -2.68 16 17 C 0.10 2.02 5.19 -62.59 -0.32 1.70 16 18 H 0.11 2.15 8.05 -51.93 -0.42 1.74 16 19 C 0.17 4.14 4.75 -1.68 -0.01 4.13 16 20 N -0.60 -14.17 3.02 -154.60 -0.47 -14.64 16 21 C -0.23 -6.10 10.38 -15.06 -0.16 -6.25 16 22 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 23 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -26.57 10.56 55.49 0.59 -25.98 16 25 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 32 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.10 1.59 6.71 -51.93 -0.35 1.24 16 36 H 0.04 0.44 7.99 -51.93 -0.41 0.02 16 37 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 38 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.06 0.84 7.03 -51.93 -0.37 0.48 16 40 H 0.08 1.43 7.09 -51.93 -0.37 1.07 16 41 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.06 1.48 7.47 -51.93 -0.39 1.09 16 44 H 0.05 1.31 7.67 -51.93 -0.40 0.91 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 367.26 15.07 5.53 5.53 Total: -1.00 -31.10 367.26 -10.62 -41.73 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -6.84 Total: 1.83 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.87 Total: 5.37 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -1.49 Total: -61.01 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.01 Total: 1.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.10 -10.62 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032428565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.079 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds