Wall clock time and date at job start Tue Mar 31 2020 18:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00224 * 2 1 4 4 C 1.46904 * 110.99694 * 123.95290 * 2 1 3 5 5 C 1.50703 * 109.46808 * 163.92410 * 4 2 1 6 6 C 1.37471 * 123.35647 * 105.26140 * 5 4 2 7 7 C 1.33809 * 115.10464 * 180.27135 * 6 5 4 8 8 S 1.70615 * 110.95650 * 359.74075 * 7 6 5 9 9 C 1.36651 * 123.34724 * 285.05380 * 5 4 2 10 10 C 1.46575 * 125.46145 * 0.02562 * 9 5 4 11 11 O 1.21706 * 120.00157 * 356.69187 * 10 9 5 12 12 N 1.34778 * 120.00027 * 176.69203 * 10 9 5 13 13 C 1.47870 * 126.94507 * 359.97438 * 12 10 9 14 14 C 1.58429 * 104.82928 * 182.30307 * 13 12 10 15 15 H 1.09010 * 116.62260 * 159.51751 * 14 13 12 16 16 C 1.57428 * 99.62506 * 32.32655 * 14 13 12 17 17 C 1.49292 * 126.94533 * 180.02562 * 12 10 9 18 18 H 1.09005 * 116.15328 * 15.83779 * 17 12 10 19 19 C 1.56020 * 104.09352 * 246.69722 * 17 12 10 20 20 N 1.47859 * 105.10525 * 287.92010 * 19 17 12 21 21 C 1.36932 * 126.94758 * 181.97874 * 20 19 17 22 22 H 1.07997 * 120.00622 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99774 * 0.02562 * 21 20 19 24 24 N 1.31613 * 120.00319 * 359.72307 * 23 21 20 25 25 Si 1.86806 * 120.00084 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46858 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47320 * 119.99990 * 25 23 21 28 28 H 1.48492 * 109.47178 * 240.00003 * 25 23 21 29 29 H 1.09001 * 109.47344 * 296.04786 * 1 2 3 30 30 H 1.09006 * 109.46857 * 56.04368 * 1 2 3 31 31 H 1.08996 * 109.47569 * 176.04583 * 1 2 3 32 32 H 1.09003 * 109.47578 * 181.80122 * 3 2 1 33 33 H 1.09005 * 109.47414 * 301.79985 * 3 2 1 34 34 H 1.09003 * 109.47199 * 61.80475 * 3 2 1 35 35 H 1.08995 * 109.47517 * 43.92441 * 4 2 1 36 36 H 1.09004 * 109.47010 * 283.91871 * 4 2 1 37 37 H 1.08003 * 122.44819 * 0.03693 * 6 5 4 38 38 H 1.08003 * 124.52742 * 179.76928 * 7 6 5 39 39 H 1.08996 * 110.31589 * 300.91250 * 13 12 10 40 40 H 1.08998 * 110.31207 * 62.99599 * 13 12 10 41 41 H 1.09005 * 112.53685 * 192.40162 * 16 14 13 42 42 H 1.09002 * 112.31503 * 64.86822 * 16 14 13 43 43 H 1.08996 * 110.31536 * 169.00738 * 19 17 12 44 44 H 1.09006 * 110.31491 * 46.82882 * 19 17 12 45 45 H 0.97000 * 120.00361 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.4500 -1.0810 0.9011 6 6 4.4777 -0.4395 1.5508 7 6 5.7062 -0.8461 1.2102 8 16 5.6362 -2.0844 0.0386 9 6 3.8785 -2.0357 0.0223 10 6 3.0122 -2.8796 -0.8058 11 8 1.8025 -2.8005 -0.6980 12 7 3.5551 -3.7431 -1.6867 13 6 4.9946 -3.9637 -1.9430 14 6 5.0394 -5.0357 -3.1087 15 1 5.9630 -5.0927 -3.6848 16 6 3.7294 -4.6356 -3.8846 17 6 2.8247 -4.6695 -2.6017 18 1 1.7646 -4.4629 -2.7485 19 6 3.1833 -6.0912 -2.0684 20 7 4.5978 -6.2987 -2.4454 21 6 5.3522 -7.4202 -2.2257 22 1 6.3819 -7.4506 -2.5499 23 6 4.7933 -8.5182 -1.5861 24 7 3.5401 -8.4793 -1.1860 25 14 5.8225 -10.0479 -1.2856 26 1 7.1916 -9.8362 -1.8203 27 1 5.8973 -10.3156 0.1732 28 1 5.1971 -11.2077 -1.9702 29 1 -0.3634 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0846 1.3425 -0.0323 33 1 1.6201 1.9047 -0.8734 34 1 1.6724 1.8846 0.9057 35 1 1.4346 -1.6949 1.2409 36 1 1.8948 -0.1775 2.0496 37 1 4.3062 0.3386 2.2799 38 1 6.6201 -0.4445 1.6223 39 1 5.4680 -3.0366 -2.2660 40 1 5.4842 -4.3457 -1.0472 41 1 3.4345 -5.3839 -4.6203 42 1 3.7943 -3.6382 -4.3196 43 1 2.5513 -6.8431 -2.5410 44 1 3.0710 -6.1283 -0.9848 45 1 3.1497 -9.2464 -0.7387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032428565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:50 Heat of formation + Delta-G solvation = 55.688880 kcal Electronic energy + Delta-G solvation = -27708.679944 eV Core-core repulsion = 24047.393932 eV Total energy + Delta-G solvation = -3661.286012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50439 -40.13741 -38.57919 -37.21970 -35.43557 -33.38956 -31.47246 -30.59086 -30.14805 -28.60523 -28.37302 -26.98627 -25.56487 -24.72903 -22.90584 -22.53084 -21.45097 -20.68766 -19.42569 -19.20319 -18.32883 -17.31950 -17.05010 -16.66918 -16.52922 -16.08910 -15.89712 -15.85131 -15.43967 -15.09634 -14.78658 -14.69941 -13.93487 -13.77491 -13.68168 -13.52180 -13.37936 -13.27414 -13.09146 -13.02479 -12.82385 -12.73414 -12.55924 -12.53261 -12.41121 -12.31830 -12.14426 -12.02573 -11.91530 -11.56429 -11.48556 -10.88848 -10.68615 -9.82268 -9.53597 -9.32876 -9.14858 -8.89129 -7.82975 -5.18956 -0.38497 0.59260 1.07102 1.44626 1.48253 1.48651 1.58966 1.98871 2.27916 2.49625 3.21571 3.33746 3.37909 3.64076 3.82150 3.85445 3.96668 4.02775 4.09172 4.21226 4.28509 4.37756 4.48138 4.50554 4.54080 4.61531 4.66452 4.73425 4.79491 4.85115 4.89863 5.00589 5.02426 5.04263 5.06011 5.13391 5.23172 5.36294 5.39120 5.46082 5.59267 5.67507 6.10453 6.11204 6.23725 6.67026 7.04046 7.22807 7.71935 8.42528 9.28328 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.003694 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.651567 B = 7577.634243 C = 8164.273271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.551 5.551 3 C 0.028 3.972 4 C 0.121 3.879 5 C -0.030 4.030 6 C -0.152 4.152 7 C -0.236 4.236 8 S 0.229 5.771 9 C -0.275 4.275 10 C 0.594 3.406 11 O -0.557 6.557 12 N -0.612 5.612 13 C 0.079 3.921 14 C 0.143 3.857 15 H 0.141 0.859 16 C -0.127 4.127 17 C 0.107 3.893 18 H 0.113 0.887 19 C 0.189 3.811 20 N -0.615 5.615 21 C -0.228 4.228 22 H 0.098 0.902 23 C -0.070 4.070 24 N -0.957 5.957 25 Si 0.976 3.024 26 H -0.257 1.257 27 H -0.301 1.301 28 H -0.297 1.297 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.164 0.836 38 H 0.198 0.802 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.020 0.980 44 H -0.006 1.006 45 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.975 21.170 1.371 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.275 5.275 3 C -0.120 4.120 4 C -0.009 4.009 5 C -0.047 4.047 6 C -0.182 4.182 7 C -0.373 4.373 8 S 0.499 5.501 9 C -0.395 4.395 10 C 0.385 3.615 11 O -0.438 6.438 12 N -0.345 5.345 13 C -0.047 4.047 14 C 0.036 3.964 15 H 0.158 0.842 16 C -0.166 4.166 17 C 0.004 3.996 18 H 0.131 0.869 19 C 0.063 3.937 20 N -0.339 5.339 21 C -0.357 4.357 22 H 0.116 0.884 23 C -0.263 4.263 24 N -0.607 5.607 25 Si 0.805 3.195 26 H -0.180 1.180 27 H -0.229 1.229 28 H -0.224 1.224 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.181 0.819 38 H 0.215 0.785 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.038 0.962 44 H 0.013 0.987 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 4.614 19.959 0.403 20.489 hybrid contribution -1.405 -0.240 2.198 2.619 sum 3.209 19.719 2.600 20.147 Atomic orbital electron populations 1.22247 0.86419 1.01624 1.00770 1.61711 1.08566 1.14172 1.43022 1.22418 1.00647 0.87842 1.01072 1.20620 0.90191 0.98293 0.91785 1.19506 0.97208 0.93649 0.94298 1.19987 0.90486 1.03818 1.03955 1.25895 1.03382 1.03556 1.04469 1.83471 0.98615 1.32126 1.35873 1.24397 0.98406 1.07544 1.09187 1.16903 0.86997 0.78743 0.78900 1.90728 1.14775 1.69579 1.68721 1.49060 1.08878 1.38182 1.38352 1.23733 0.80291 1.00181 1.00454 1.24097 0.97853 0.83387 0.91025 0.84174 1.24078 0.95311 1.02453 0.94805 1.24085 0.97164 0.88149 0.90221 0.86911 1.21513 0.85792 0.91166 0.95234 1.45524 1.08561 1.12333 1.67446 1.19593 0.94786 0.90568 1.30766 0.88435 1.25654 0.97437 1.01606 1.01593 1.70172 1.14025 1.30397 1.46059 0.85036 0.78651 0.79299 0.76522 1.18043 1.22886 1.22434 0.94726 0.90683 0.93130 0.91766 0.90983 0.94558 0.91555 0.92378 0.81895 0.78486 0.89019 0.92408 0.89549 0.88176 0.96222 0.98729 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 9.54 127.69 1.22 2.12 16 2 N -0.55 -14.78 4.54 -953.45 -4.33 -19.11 16 3 C 0.03 0.56 9.40 127.69 1.20 1.76 16 4 C 0.12 3.34 4.34 85.56 0.37 3.72 16 5 C -0.03 -0.84 4.66 -20.42 -0.10 -0.93 16 6 C -0.15 -3.18 9.54 21.08 0.20 -2.98 16 7 C -0.24 -4.50 10.92 66.81 0.73 -3.77 16 8 S 0.23 5.69 18.69 -56.49 -1.06 4.63 16 9 C -0.27 -8.92 6.39 24.07 0.15 -8.76 16 10 C 0.59 23.54 7.85 86.42 0.68 24.22 16 11 O -0.56 -24.68 14.58 -4.37 -0.06 -24.74 16 12 N -0.61 -23.50 2.95 -768.18 -2.27 -25.77 16 13 C 0.08 2.66 4.69 88.06 0.41 3.07 16 14 C 0.14 5.01 5.63 47.95 0.27 5.28 16 15 H 0.14 4.03 8.14 -2.38 -0.02 4.01 16 16 C -0.13 -4.09 6.85 33.57 0.23 -3.86 16 17 C 0.11 4.27 5.19 46.91 0.24 4.52 16 18 H 0.11 4.49 8.05 -2.38 -0.02 4.47 16 19 C 0.19 9.58 4.75 87.17 0.41 9.99 16 20 N -0.61 -29.60 3.02 -643.05 -1.94 -31.54 16 21 C -0.23 -12.04 10.38 84.03 0.87 -11.17 16 22 H 0.10 4.72 7.83 -2.91 -0.02 4.70 16 23 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 24 N -0.96 -58.65 10.56 21.65 0.23 -58.42 16 25 Si 0.98 45.21 29.55 68.60 2.03 47.24 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 1.46 8.08 -2.39 -0.02 1.44 16 32 H 0.06 1.30 7.11 -2.39 -0.02 1.28 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 2.26 6.71 -2.39 -0.02 2.24 16 36 H 0.06 1.30 7.99 -2.39 -0.02 1.28 16 37 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.20 2.35 8.06 -2.91 -0.02 2.32 16 39 H 0.09 2.45 7.03 -2.39 -0.02 2.43 16 40 H 0.06 2.17 7.09 -2.39 -0.02 2.15 16 41 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 42 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.02 1.12 7.47 -2.39 -0.02 1.10 16 44 H -0.01 -0.33 7.67 -2.38 -0.02 -0.35 16 45 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.94 367.26 0.95 -71.99 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.98 Total: 16.01 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 7.37 Total: 19.72 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -8.31 Total: -134.84 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 5.69 SS G_CDS: -1.06 Total: 4.63 kcal Total: -72.94 0.95 -71.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032428565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.677 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds