Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99715 * 2 1 4 4 O 1.21688 * 120.00201 * 184.90653 * 3 2 1 5 5 C 1.46678 * 120.00395 * 4.91230 * 3 2 1 6 6 C 1.35667 * 126.13068 * 353.17897 * 5 3 2 7 7 N 1.30940 * 114.19265 * 180.02562 * 6 5 3 8 8 C 1.29425 * 117.36544 * 0.02562 * 7 6 5 9 9 C 1.50704 * 124.80597 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46844 * 89.97904 * 9 8 7 11 11 C 1.53004 * 117.49372 * 243.62232 * 10 9 8 12 12 C 1.52999 * 60.00013 * 252.51187 * 11 10 9 13 13 S 1.70957 * 110.38967 * 359.72867 * 8 7 6 14 14 C 1.46496 * 119.99852 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.91586 * 189.73018 * 14 2 1 16 16 C 1.55161 * 111.00753 * 65.83113 * 14 2 1 17 17 C 1.54317 * 103.10053 * 277.51768 * 16 14 2 18 18 N 1.47024 * 107.27172 * 337.71447 * 17 16 14 19 19 C 1.36941 * 125.64694 * 178.98071 * 18 17 16 20 20 H 1.07998 * 119.99878 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00160 * 359.97100 * 19 18 17 22 22 N 1.31622 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00368 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46770 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47262 * 120.00040 * 23 21 19 26 26 H 1.48495 * 109.47288 * 240.00817 * 23 21 19 27 27 C 1.47416 * 108.70271 * 358.94421 * 18 17 16 28 28 H 1.08999 * 109.46940 * 180.71059 * 1 2 3 29 29 H 1.08999 * 109.46926 * 300.70330 * 1 2 3 30 30 H 1.08993 * 109.47443 * 60.70111 * 1 2 3 31 31 H 1.07998 * 122.90166 * 359.97346 * 6 5 3 32 32 H 1.09000 * 109.46822 * 209.97999 * 9 8 7 33 33 H 1.08999 * 109.46592 * 329.98063 * 9 8 7 34 34 H 1.08996 * 115.55538 * 29.32946 * 10 9 8 35 35 H 1.08999 * 117.50218 * 359.97438 * 11 10 9 36 36 H 1.09004 * 117.49669 * 145.02382 * 11 10 9 37 37 H 1.09001 * 117.50277 * 252.51513 * 12 11 10 38 38 H 1.09004 * 117.51815 * 107.47789 * 12 11 10 39 39 H 1.08993 * 110.72158 * 159.06045 * 16 14 2 40 40 H 1.09000 * 110.71414 * 35.96521 * 16 14 2 41 41 H 1.09003 * 109.88418 * 97.13397 * 17 16 14 42 42 H 1.09001 * 109.88287 * 218.14234 * 17 16 14 43 43 H 0.97008 * 120.00106 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36648 * 142.96634 * 27 18 17 45 45 H 1.09003 * 110.36705 * 265.28721 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3524 1.1692 -0.0901 5 6 1.4095 2.4351 0.1088 6 6 0.0616 2.5872 0.0850 7 7 -0.3405 3.8280 0.2000 8 6 0.5702 4.7399 0.3192 9 6 0.2969 6.2151 0.4623 10 6 0.1632 6.5673 1.9452 11 6 -1.1912 7.0910 2.4275 12 6 -0.0007 8.0446 2.3083 13 16 2.1268 4.0333 0.2994 14 6 2.1975 -1.2687 -0.0006 15 1 3.2612 -1.1040 0.1716 16 6 1.9620 -2.0464 -1.3224 17 6 0.6148 -2.7571 -1.0749 18 7 0.4306 -2.8487 0.3809 19 6 -0.6525 -3.3960 1.0154 20 1 -0.6930 -3.4159 2.0945 21 6 -1.6983 -3.9252 0.2718 22 7 -1.6487 -3.9014 -1.0433 23 14 -3.1761 -4.6711 1.1373 24 1 -2.9894 -4.5747 2.6074 25 1 -4.4038 -3.9334 0.7452 26 1 -3.3100 -6.0978 0.7475 27 6 1.6054 -2.2547 1.0443 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 0.5029 -0.8961 31 1 -0.6207 1.7568 -0.0205 32 1 1.1206 6.7810 0.0272 33 1 -0.6292 6.4648 -0.0554 34 1 0.7339 5.9409 2.6307 35 1 -1.9867 7.1849 1.6883 36 1 -1.5116 6.8089 3.4304 37 1 0.4622 8.3899 3.2328 38 1 -0.0127 8.7655 1.4908 39 1 2.7567 -2.7734 -1.4890 40 1 1.8865 -1.3596 -2.1655 41 1 -0.1966 -2.1775 -1.5154 42 1 0.6366 -3.7555 -1.5117 43 1 -2.3794 -4.2715 -1.5630 44 1 1.3023 -1.7174 1.9430 45 1 2.3331 -3.0278 1.2909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033291154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = 92.890960 kcal Electronic energy + Delta-G solvation = -26628.480884 eV Core-core repulsion = 22968.808076 eV Total energy + Delta-G solvation = -3659.672809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.45872 -39.32876 -37.78703 -37.41760 -34.48063 -32.65407 -31.64289 -29.61595 -28.74860 -27.74501 -26.56539 -24.71570 -24.09882 -22.69657 -21.99771 -21.19072 -20.23603 -20.09868 -19.03577 -17.85480 -17.06027 -16.76506 -15.92912 -15.60550 -15.48998 -14.94451 -14.87036 -14.72158 -14.15087 -13.91600 -13.78599 -13.64519 -13.12699 -12.87010 -12.65469 -12.19980 -12.03388 -11.91923 -11.84069 -11.81738 -11.76251 -11.17506 -11.00326 -10.89725 -10.82857 -10.75614 -10.41567 -10.33938 -10.17447 -10.00989 -9.80069 -9.73857 -9.50004 -9.43374 -8.94959 -8.75708 -8.30339 -6.93971 -5.82831 -3.18342 0.22458 1.09510 1.61983 2.47730 3.28032 3.32906 3.34517 3.40577 3.42290 3.43072 3.86598 4.40538 4.40687 4.55094 4.60905 4.70531 4.82075 5.11915 5.23264 5.28109 5.29805 5.30752 5.34833 5.37999 5.43483 5.58626 5.58778 5.60941 5.78589 5.81941 5.86219 5.86482 6.01155 6.12959 6.28414 6.41469 6.48717 6.57100 6.69185 6.99432 7.46379 7.49736 7.57599 7.66936 7.73105 8.11752 8.30136 9.09753 9.68850 10.33281 11.27831 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002973 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.866739 B = 9415.526412 C =10774.139111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.570 5.570 3 C 0.587 3.413 4 O -0.551 6.551 5 C -0.283 4.283 6 C 0.063 3.937 7 N -0.472 5.472 8 C 0.041 3.959 9 C -0.013 4.013 10 C -0.151 4.151 11 C -0.172 4.172 12 C -0.177 4.177 13 S 0.208 5.792 14 C 0.124 3.876 15 H 0.101 0.899 16 C -0.156 4.156 17 C 0.172 3.828 18 N -0.602 5.602 19 C -0.234 4.234 20 H 0.080 0.920 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.125 3.875 28 H 0.147 0.853 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.046 0.954 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.489 20.237 2.711 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.300 5.300 3 C 0.374 3.626 4 O -0.431 6.431 5 C -0.408 4.408 6 C -0.093 4.093 7 N -0.186 5.186 8 C -0.234 4.234 9 C -0.054 4.054 10 C -0.171 4.171 11 C -0.209 4.209 12 C -0.214 4.214 13 S 0.465 5.535 14 C 0.020 3.980 15 H 0.119 0.881 16 C -0.195 4.195 17 C 0.047 3.953 18 N -0.329 5.329 19 C -0.362 4.362 20 H 0.097 0.903 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.002 4.002 28 H 0.164 0.836 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.228 0.772 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.405 20.689 2.679 21.550 hybrid contribution -1.539 -1.275 0.264 2.016 sum 3.866 19.414 2.943 20.012 Atomic orbital electron populations 1.22965 0.78793 1.09701 0.99359 1.47453 1.07582 1.04631 1.70380 1.16800 0.86359 0.82210 0.77222 1.90789 1.13143 1.87237 1.51940 1.25771 0.97954 0.98917 1.18116 1.23900 0.93516 0.94952 0.96945 1.66260 1.36328 1.00233 1.15814 1.27409 0.92909 1.00821 1.02296 1.19859 1.04027 0.85907 0.95607 1.22190 1.01935 0.97348 0.95612 1.23052 0.91558 1.03316 1.02967 1.23012 1.02833 0.92165 1.03362 1.83917 1.09012 0.96485 1.64073 1.22425 0.96054 0.81961 0.97543 0.88074 1.23275 1.00981 0.98999 0.96248 1.21256 0.90943 0.98513 0.84541 1.44661 1.17522 1.69218 1.01549 1.19086 0.94107 1.32070 0.90957 0.90251 1.24806 0.98705 1.00965 0.95622 1.69975 1.32555 1.50425 1.03588 0.86060 0.82532 0.78708 0.78538 1.20487 1.21649 1.21743 1.21986 0.90585 0.93300 0.94295 0.83559 0.92168 0.92420 0.77226 0.89075 0.88433 0.87585 0.88376 0.88706 0.88576 0.88519 0.91194 0.91815 0.93094 0.93677 0.93625 0.93557 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 7.51 59.85 0.45 1.02 16 2 N -0.57 -10.03 2.91 -172.73 -0.50 -10.53 16 3 C 0.59 10.42 7.64 -12.86 -0.10 10.32 16 4 O -0.55 -10.99 16.40 5.20 0.09 -10.90 16 5 C -0.28 -4.36 6.43 -37.10 -0.24 -4.60 16 6 C 0.06 0.92 9.53 -18.85 -0.18 0.74 16 7 N -0.47 -6.57 10.51 -11.50 -0.12 -6.69 16 8 C 0.04 0.47 6.59 -13.29 -0.09 0.38 16 9 C -0.01 -0.11 6.07 -27.88 -0.17 -0.28 16 10 C -0.15 -1.19 5.72 -90.62 -0.52 -1.71 16 11 C -0.17 -1.26 10.18 -26.73 -0.27 -1.54 16 12 C -0.18 -1.08 10.25 -26.73 -0.27 -1.36 16 13 S 0.21 2.58 23.02 -107.50 -2.47 0.10 16 14 C 0.12 2.25 3.65 -65.52 -0.24 2.01 16 15 H 0.10 1.80 7.11 -51.93 -0.37 1.43 16 16 C -0.16 -2.88 6.54 -24.90 -0.16 -3.04 16 17 C 0.17 3.86 4.31 -3.07 -0.01 3.85 16 18 N -0.60 -13.98 1.90 -169.77 -0.32 -14.30 16 19 C -0.23 -6.00 9.91 -15.06 -0.15 -6.15 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C 0.00 -0.11 5.49 -17.43 -0.10 -0.20 16 22 N -0.92 -25.17 10.31 55.49 0.57 -24.60 16 23 Si 0.91 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.13 2.46 6.41 -2.27 -0.01 2.45 16 28 H 0.15 3.02 3.51 -51.93 -0.18 2.83 16 29 H 0.06 0.94 6.36 -51.93 -0.33 0.61 16 30 H 0.06 0.90 6.63 -51.93 -0.34 0.55 16 31 H 0.21 2.94 3.59 -52.49 -0.19 2.75 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.77 7.88 -51.93 -0.41 0.36 16 34 H 0.11 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.10 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 1.24 6.41 -51.93 -0.33 0.91 16 42 H 0.05 1.14 7.50 -51.93 -0.39 0.76 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -29.70 368.53 -10.61 -40.31 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.31 Total: 3.19 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -2.06 Total: 1.90 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.37 Total: -56.12 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -2.47 Total: 0.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.70 -10.61 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033291154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.197 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds