Wall clock time and date at job start Tue Mar 31 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99715 * 2 1 4 4 O 1.21688 * 120.00201 * 184.90653 * 3 2 1 5 5 C 1.46678 * 120.00395 * 4.91230 * 3 2 1 6 6 C 1.35667 * 126.13068 * 353.17897 * 5 3 2 7 7 N 1.30940 * 114.19265 * 180.02562 * 6 5 3 8 8 C 1.29425 * 117.36544 * 0.02562 * 7 6 5 9 9 C 1.50704 * 124.80597 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.46844 * 89.97904 * 9 8 7 11 11 C 1.53004 * 117.49372 * 243.62232 * 10 9 8 12 12 C 1.52999 * 60.00013 * 252.51187 * 11 10 9 13 13 S 1.70957 * 110.38967 * 359.72867 * 8 7 6 14 14 C 1.46496 * 119.99852 * 180.02562 * 2 1 3 15 15 H 1.09004 * 110.91586 * 189.73018 * 14 2 1 16 16 C 1.55161 * 111.00753 * 65.83113 * 14 2 1 17 17 C 1.54317 * 103.10053 * 277.51768 * 16 14 2 18 18 N 1.47024 * 107.27172 * 337.71447 * 17 16 14 19 19 C 1.36941 * 125.64694 * 178.98071 * 18 17 16 20 20 H 1.07998 * 119.99878 * 179.97438 * 19 18 17 21 21 C 1.38808 * 120.00160 * 359.97100 * 19 18 17 22 22 N 1.31622 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00368 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46770 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47262 * 120.00040 * 23 21 19 26 26 H 1.48495 * 109.47288 * 240.00817 * 23 21 19 27 27 C 1.47416 * 108.70271 * 358.94421 * 18 17 16 28 28 H 1.08999 * 109.46940 * 180.71059 * 1 2 3 29 29 H 1.08999 * 109.46926 * 300.70330 * 1 2 3 30 30 H 1.08993 * 109.47443 * 60.70111 * 1 2 3 31 31 H 1.07998 * 122.90166 * 359.97346 * 6 5 3 32 32 H 1.09000 * 109.46822 * 209.97999 * 9 8 7 33 33 H 1.08999 * 109.46592 * 329.98063 * 9 8 7 34 34 H 1.08996 * 115.55538 * 29.32946 * 10 9 8 35 35 H 1.08999 * 117.50218 * 359.97438 * 11 10 9 36 36 H 1.09004 * 117.49669 * 145.02382 * 11 10 9 37 37 H 1.09001 * 117.50277 * 252.51513 * 12 11 10 38 38 H 1.09004 * 117.51815 * 107.47789 * 12 11 10 39 39 H 1.08993 * 110.72158 * 159.06045 * 16 14 2 40 40 H 1.09000 * 110.71414 * 35.96521 * 16 14 2 41 41 H 1.09003 * 109.88418 * 97.13397 * 17 16 14 42 42 H 1.09001 * 109.88287 * 218.14234 * 17 16 14 43 43 H 0.97008 * 120.00106 * 179.97438 * 22 21 19 44 44 H 1.09004 * 110.36648 * 142.96634 * 27 18 17 45 45 H 1.09003 * 110.36705 * 265.28721 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3524 1.1692 -0.0901 5 6 1.4095 2.4351 0.1088 6 6 0.0616 2.5872 0.0850 7 7 -0.3405 3.8280 0.2000 8 6 0.5702 4.7399 0.3192 9 6 0.2969 6.2151 0.4623 10 6 0.1632 6.5673 1.9452 11 6 -1.1912 7.0910 2.4275 12 6 -0.0007 8.0446 2.3083 13 16 2.1268 4.0333 0.2994 14 6 2.1975 -1.2687 -0.0006 15 1 3.2612 -1.1040 0.1716 16 6 1.9620 -2.0464 -1.3224 17 6 0.6148 -2.7571 -1.0749 18 7 0.4306 -2.8487 0.3809 19 6 -0.6525 -3.3960 1.0154 20 1 -0.6930 -3.4159 2.0945 21 6 -1.6983 -3.9252 0.2718 22 7 -1.6487 -3.9014 -1.0433 23 14 -3.1761 -4.6711 1.1373 24 1 -2.9894 -4.5747 2.6074 25 1 -4.4038 -3.9334 0.7452 26 1 -3.3100 -6.0978 0.7475 27 6 1.6054 -2.2547 1.0443 28 1 -0.3633 -1.0276 0.0127 29 1 -0.3633 0.5247 0.8836 30 1 -0.3634 0.5029 -0.8961 31 1 -0.6207 1.7568 -0.0205 32 1 1.1206 6.7810 0.0272 33 1 -0.6292 6.4648 -0.0554 34 1 0.7339 5.9409 2.6307 35 1 -1.9867 7.1849 1.6883 36 1 -1.5116 6.8089 3.4304 37 1 0.4622 8.3899 3.2328 38 1 -0.0127 8.7655 1.4908 39 1 2.7567 -2.7734 -1.4890 40 1 1.8865 -1.3596 -2.1655 41 1 -0.1966 -2.1775 -1.5154 42 1 0.6366 -3.7555 -1.5117 43 1 -2.3794 -4.2715 -1.5630 44 1 1.3023 -1.7174 1.9430 45 1 2.3331 -3.0278 1.2909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033291154.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:09 Heat of formation + Delta-G solvation = 77.367418 kcal Electronic energy + Delta-G solvation = -26629.154036 eV Core-core repulsion = 22968.808076 eV Total energy + Delta-G solvation = -3660.345960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.72745 -40.53288 -39.05920 -38.33922 -36.01993 -34.29705 -32.79729 -31.23886 -30.02413 -29.17865 -28.03215 -26.37717 -25.28853 -23.35795 -23.16818 -22.00452 -21.87702 -21.31600 -20.37406 -18.99593 -18.87598 -17.92746 -17.35956 -16.76947 -16.65634 -16.33671 -16.03705 -15.79711 -15.68764 -15.56300 -14.74876 -14.57277 -14.38936 -14.27094 -13.86890 -13.65553 -13.58408 -13.43856 -13.05445 -12.86167 -12.81513 -12.55733 -12.44747 -12.36221 -12.31057 -11.97362 -11.89803 -11.82568 -11.55921 -11.32902 -11.16244 -10.87612 -10.71305 -10.63136 -10.55834 -9.96993 -9.76394 -8.84501 -7.82904 -5.18744 -0.84251 0.06874 0.59396 1.34354 1.49322 1.51290 1.59884 1.97774 2.01451 2.50853 2.86526 3.01907 3.37034 3.42617 3.63898 3.79236 3.85115 3.86531 3.95368 4.02679 4.11218 4.16603 4.21991 4.29734 4.49369 4.50979 4.58529 4.64067 4.69984 4.74110 4.85430 4.85517 4.92832 4.97550 5.02396 5.08534 5.18258 5.27632 5.31045 5.50475 5.52411 5.66074 5.78447 6.18858 6.27541 6.54470 6.92440 7.11538 7.76130 8.40109 9.26591 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.014703 B = 0.002973 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.866739 B = 9415.526412 C =10774.139111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.574 5.574 3 C 0.590 3.410 4 O -0.577 6.577 5 C -0.320 4.320 6 C 0.074 3.926 7 N -0.497 5.497 8 C 0.059 3.941 9 C -0.014 4.014 10 C -0.164 4.164 11 C -0.183 4.183 12 C -0.158 4.158 13 S 0.237 5.763 14 C 0.134 3.866 15 H 0.111 0.889 16 C -0.142 4.142 17 C 0.186 3.814 18 N -0.614 5.614 19 C -0.236 4.236 20 H 0.082 0.918 21 C -0.055 4.055 22 N -0.945 5.945 23 Si 0.971 3.029 24 H -0.269 1.269 25 H -0.292 1.292 26 H -0.298 1.298 27 C 0.127 3.873 28 H 0.114 0.886 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.210 0.790 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.027 0.973 42 H 0.009 0.991 43 H 0.247 0.753 44 H 0.048 0.952 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 22.650 3.495 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.303 5.303 3 C 0.379 3.621 4 O -0.460 6.460 5 C -0.444 4.444 6 C -0.084 4.084 7 N -0.211 5.211 8 C -0.215 4.215 9 C -0.055 4.055 10 C -0.183 4.183 11 C -0.220 4.220 12 C -0.195 4.195 13 S 0.495 5.505 14 C 0.029 3.971 15 H 0.129 0.871 16 C -0.181 4.181 17 C 0.061 3.939 18 N -0.340 5.340 19 C -0.365 4.365 20 H 0.100 0.900 21 C -0.249 4.249 22 N -0.593 5.593 23 Si 0.800 3.200 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.225 1.225 27 C 0.001 3.999 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.135 0.865 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.842 23.123 3.489 24.103 hybrid contribution -1.659 -1.900 0.067 2.523 sum 4.183 21.223 3.557 21.922 Atomic orbital electron populations 1.22825 0.78529 1.07778 1.00659 1.47473 1.07681 1.04650 1.70517 1.17010 0.86094 0.82726 0.76310 1.90763 1.14196 1.87667 1.53327 1.25616 0.98478 0.99338 1.21013 1.23873 0.93211 0.95451 0.95861 1.66334 1.36996 1.00257 1.17523 1.28076 0.92339 1.02000 0.99134 1.20097 1.05472 0.83648 0.96242 1.22143 1.02390 0.98818 0.94996 1.23122 0.91767 1.04225 1.02905 1.23103 1.01054 0.91204 1.04091 1.83785 1.08836 0.94448 1.63415 1.22299 0.96427 0.81952 0.96402 0.87123 1.23143 0.99028 0.99133 0.96811 1.20954 0.92397 0.96480 0.84046 1.44785 1.18034 1.69158 1.02069 1.19360 0.94759 1.31114 0.91240 0.90010 1.25485 1.01124 1.02068 0.96208 1.70160 1.32920 1.51574 1.04691 0.85126 0.79546 0.77189 0.78134 1.19302 1.21909 1.22533 1.22070 0.89588 0.93715 0.94564 0.86787 0.90868 0.91219 0.77373 0.86491 0.87667 0.88574 0.88214 0.89027 0.87791 0.86991 0.89548 0.91112 0.95468 0.97272 0.94376 0.93412 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 7.51 127.77 0.96 2.46 16 2 N -0.57 -19.86 2.91 -818.61 -2.38 -22.24 16 3 C 0.59 20.47 7.64 86.45 0.66 21.13 16 4 O -0.58 -22.53 16.40 -4.31 -0.07 -22.60 16 5 C -0.32 -9.54 6.43 23.88 0.15 -9.39 16 6 C 0.07 2.07 9.53 84.23 0.80 2.87 16 7 N -0.50 -13.09 10.51 -190.30 -2.00 -15.09 16 8 C 0.06 1.25 6.59 88.46 0.58 1.83 16 9 C -0.01 -0.19 6.07 29.85 0.18 -0.01 16 10 C -0.16 -2.19 5.72 -10.79 -0.06 -2.25 16 11 C -0.18 -2.33 10.18 30.60 0.31 -2.02 16 12 C -0.16 -1.47 10.25 30.59 0.31 -1.15 16 13 S 0.24 5.45 23.02 -56.49 -1.30 4.15 16 14 C 0.13 4.74 3.65 46.55 0.17 4.91 16 15 H 0.11 3.79 7.11 -2.38 -0.02 3.77 16 16 C -0.14 -5.19 6.54 31.78 0.21 -4.98 16 17 C 0.19 8.56 4.31 86.73 0.37 8.93 16 18 N -0.61 -28.78 1.90 -691.05 -1.32 -30.09 16 19 C -0.24 -12.20 9.91 84.03 0.83 -11.36 16 20 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 21 C -0.06 -2.93 5.49 84.86 0.47 -2.47 16 22 N -0.94 -53.28 10.31 21.65 0.22 -53.06 16 23 Si 0.97 43.68 29.55 68.60 2.03 45.71 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.13 4.91 6.41 87.02 0.56 5.47 16 28 H 0.11 4.77 3.51 -2.39 -0.01 4.76 16 29 H 0.07 2.26 6.36 -2.39 -0.02 2.24 16 30 H 0.07 2.16 6.63 -2.39 -0.02 2.15 16 31 H 0.21 5.72 3.59 -2.91 -0.01 5.71 16 32 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.35 7.88 -2.39 -0.02 1.33 16 34 H 0.10 1.49 8.07 -2.39 -0.02 1.47 16 35 H 0.10 1.22 8.03 -2.39 -0.02 1.21 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.03 1.37 6.41 -2.39 -0.02 1.36 16 42 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 43 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 44 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.17 368.53 2.71 -61.47 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.01 Total: 17.79 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 6.51 Total: 13.97 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.48 Total: -120.48 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.07 Total: -22.60 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.30 Total: 4.15 kcal Total: -64.17 2.71 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033291154.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.835 kcal (2) G-P(sol) polarization free energy of solvation -64.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds