Wall clock time and date at job start Tue Mar 31 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34772 * 119.99836 * 2 1 4 4 O 1.21684 * 119.99956 * 182.28956 * 3 2 1 5 5 C 1.46687 * 120.00121 * 2.28810 * 3 2 1 6 6 C 1.35662 * 126.12659 * 174.02897 * 5 3 2 7 7 N 1.30945 * 114.18844 * 179.97438 * 6 5 3 8 8 C 1.29438 * 117.36432 * 359.97438 * 7 6 5 9 9 C 1.50691 * 124.80481 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.47040 * 90.02398 * 9 8 7 11 11 C 1.53002 * 117.49830 * 243.61991 * 10 9 8 12 12 C 1.52994 * 59.99932 * 252.51090 * 11 10 9 13 13 S 1.70957 * 110.38972 * 0.02562 * 8 7 6 14 14 C 1.46499 * 119.99635 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.63737 * 181.69051 * 14 2 1 16 16 C 1.55153 * 110.72213 * 305.02382 * 14 2 1 17 17 C 1.54916 * 101.57986 * 153.87115 * 16 14 2 18 18 N 1.47427 * 104.82729 * 322.98895 * 17 16 14 19 19 C 1.36939 * 125.64242 * 204.16541 * 18 17 16 20 20 H 1.08003 * 119.99452 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00410 * 359.96209 * 19 18 17 22 22 N 1.31616 * 119.99785 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47077 * 90.00182 * 23 21 19 25 25 H 1.48494 * 109.47024 * 209.99503 * 23 21 19 26 26 H 1.48495 * 109.47244 * 329.99976 * 23 21 19 27 27 C 1.47012 * 108.70535 * 24.13092 * 18 17 16 28 28 H 1.08992 * 109.46717 * 55.21764 * 1 2 3 29 29 H 1.09003 * 109.46491 * 175.21728 * 1 2 3 30 30 H 1.08998 * 109.46953 * 295.21789 * 1 2 3 31 31 H 1.07992 * 122.91099 * 0.24206 * 6 5 3 32 32 H 1.08998 * 109.47256 * 210.02018 * 9 8 7 33 33 H 1.08999 * 109.47493 * 330.02643 * 9 8 7 34 34 H 1.08995 * 115.54967 * 29.32992 * 10 9 8 35 35 H 1.09001 * 117.49856 * 0.02562 * 11 10 9 36 36 H 1.08996 * 117.49718 * 145.01661 * 11 10 9 37 37 H 1.09003 * 117.50063 * 252.50766 * 12 11 10 38 38 H 1.09004 * 117.49736 * 107.48935 * 12 11 10 39 39 H 1.08998 * 111.00509 * 271.93936 * 16 14 2 40 40 H 1.09001 * 111.00516 * 35.79568 * 16 14 2 41 41 H 1.09001 * 110.36285 * 204.15354 * 17 16 14 42 42 H 1.08997 * 110.46284 * 81.87624 * 17 16 14 43 43 H 0.96999 * 119.99804 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.88438 * 239.51887 * 27 18 17 45 45 H 1.09006 * 109.88308 * 118.35554 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3550 1.1676 -0.0421 5 6 1.4064 2.4370 0.0507 6 6 1.9543 3.6723 0.1705 7 7 1.0803 4.6472 0.1915 8 6 -0.1703 4.3271 0.0975 9 6 -1.3125 5.3100 0.1044 10 6 -1.6183 5.7467 -1.3298 11 6 -1.4116 7.2221 -1.6783 12 6 -2.8277 6.6580 -1.5481 13 16 -0.3430 2.6314 -0.0341 14 6 2.1975 -1.2688 0.0006 15 1 3.2727 -1.0917 0.0306 16 6 1.7507 -2.1601 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3991 -4.5865 -1.5734 20 1 1.1718 -4.4369 -2.6186 21 6 1.3536 -5.8626 -1.0290 22 7 1.6314 -6.0449 0.2445 23 14 0.8996 -7.3211 -2.1042 24 1 2.1298 -7.8923 -2.7089 25 1 0.2284 -8.3558 -1.2771 26 1 -0.0202 -6.8749 -3.1812 27 6 1.8183 -2.1187 -1.2304 28 1 -0.3632 0.5862 -0.8440 29 1 -0.3632 -1.0241 -0.0857 30 1 -0.3633 0.4378 0.9297 31 1 3.0193 3.8377 0.2381 32 1 -2.1951 4.8384 0.5366 33 1 -1.0384 6.1815 0.6989 34 1 -1.3966 5.0108 -2.1026 35 1 -1.0573 7.8815 -0.8860 36 1 -1.0535 7.4570 -2.6806 37 1 -3.4015 6.5219 -2.4648 38 1 -3.4056 6.9464 -0.6700 39 1 2.3373 -1.9435 2.0821 40 1 0.6849 -2.0435 1.3861 41 1 1.4431 -4.3204 1.1514 42 1 3.1195 -3.8129 0.7858 43 1 1.6000 -6.9367 0.6249 44 1 0.8542 -1.7944 -1.6220 45 1 2.5849 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033291157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:14 Heat of formation + Delta-G solvation = 71.098616 kcal Electronic energy + Delta-G solvation = -26065.845796 eV Core-core repulsion = 22405.228000 eV Total energy + Delta-G solvation = -3660.617796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.35313 -39.55507 -37.86553 -37.29430 -34.95693 -32.49776 -31.87397 -29.54759 -28.86428 -27.69607 -26.74787 -24.97044 -24.28318 -22.76928 -22.13336 -21.19541 -20.26808 -19.70037 -18.90525 -18.51758 -17.06859 -16.65666 -16.48362 -15.79830 -15.73125 -15.07326 -14.98009 -14.67529 -14.19231 -13.95959 -13.89651 -13.64569 -13.24061 -13.16388 -13.03826 -12.52867 -12.47181 -11.99984 -11.91332 -11.90806 -11.64737 -11.60901 -11.14677 -10.97740 -10.85322 -10.83504 -10.53045 -10.42121 -10.15821 -9.97311 -9.88738 -9.67119 -9.62310 -9.60340 -9.14204 -8.70947 -8.46073 -6.90819 -5.70799 -3.13449 0.08881 1.00782 1.43821 2.32806 2.95291 3.14565 3.35260 3.37130 3.42293 3.43939 3.74771 4.32234 4.43891 4.45573 4.47817 4.55842 4.73627 4.99687 5.03003 5.14214 5.16362 5.22421 5.22659 5.27414 5.37434 5.44025 5.49148 5.50908 5.61052 5.64401 5.71359 5.78205 5.80151 5.92950 6.13658 6.25837 6.44876 6.49407 6.63084 6.86507 7.34591 7.44624 7.48938 7.56770 7.78354 8.09675 8.29170 9.15749 9.76170 10.39842 11.32996 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.002381 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.197992 B =11758.595053 C =12495.713853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.592 5.592 3 C 0.591 3.409 4 O -0.529 6.529 5 C -0.289 4.289 6 C 0.116 3.884 7 N -0.478 5.478 8 C 0.030 3.970 9 C -0.015 4.015 10 C -0.151 4.151 11 C -0.173 4.173 12 C -0.176 4.176 13 S 0.197 5.803 14 C 0.127 3.873 15 H 0.107 0.893 16 C -0.152 4.152 17 C 0.153 3.847 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.129 3.871 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.186 0.814 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.016 0.984 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 23.432 1.135 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.323 5.323 3 C 0.378 3.622 4 O -0.408 6.408 5 C -0.413 4.413 6 C -0.041 4.041 7 N -0.192 5.192 8 C -0.244 4.244 9 C -0.055 4.055 10 C -0.171 4.171 11 C -0.210 4.210 12 C -0.213 4.213 13 S 0.455 5.545 14 C 0.024 3.976 15 H 0.125 0.875 16 C -0.191 4.191 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.203 0.797 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.128 0.872 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.797 23.084 1.082 25.101 hybrid contribution 0.774 -0.554 -0.572 1.111 sum -9.023 22.530 0.509 24.275 Atomic orbital electron populations 1.21906 0.80209 1.04932 1.01244 1.47705 1.06708 1.05979 1.71953 1.16774 0.86601 0.81848 0.76980 1.90828 1.12520 1.86605 1.50819 1.25824 0.96395 0.99633 1.19447 1.22136 1.01095 0.85204 0.95683 1.66272 1.00375 1.35868 1.16681 1.27761 0.96036 0.99679 1.00877 1.19864 0.92618 0.96812 0.96249 1.22182 1.03764 0.94422 0.96716 1.23047 0.99193 0.95590 1.03176 1.23015 0.91026 1.03696 1.03553 1.84484 1.03436 1.01426 1.65128 1.22361 0.97187 0.80626 0.97398 0.87494 1.23417 1.00693 0.98681 0.96341 1.21960 0.99085 0.91703 0.84490 1.44442 1.81069 1.00684 1.06703 1.19063 1.38992 0.84947 0.92151 0.90433 1.24797 1.01912 0.97423 0.96434 1.69774 1.55349 1.20893 1.11011 0.86054 0.78006 0.82249 0.79063 1.21572 1.21615 1.20684 1.21536 0.98062 0.86312 0.93872 0.91657 0.87442 0.91478 0.79727 0.89012 0.88663 0.87576 0.88441 0.88741 0.88500 0.88483 0.91854 0.91638 0.87157 0.96559 0.93623 0.95440 0.95495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 7.29 59.85 0.44 1.19 16 2 N -0.59 -9.19 2.88 -173.37 -0.50 -9.69 16 3 C 0.59 9.51 7.65 -12.85 -0.10 9.42 16 4 O -0.53 -10.17 16.24 5.20 0.08 -10.08 16 5 C -0.29 -3.80 6.33 -37.09 -0.23 -4.03 16 6 C 0.12 1.49 11.10 -18.85 -0.21 1.28 16 7 N -0.48 -5.77 10.51 -11.50 -0.12 -5.89 16 8 C 0.03 0.30 6.59 -13.29 -0.09 0.21 16 9 C -0.01 -0.10 6.07 -27.88 -0.17 -0.27 16 10 C -0.15 -1.02 5.72 -90.62 -0.52 -1.54 16 11 C -0.17 -1.10 10.18 -26.73 -0.27 -1.37 16 12 C -0.18 -0.94 10.25 -26.74 -0.27 -1.21 16 13 S 0.20 1.89 17.81 -107.50 -1.91 -0.02 16 14 C 0.13 2.33 3.32 -66.10 -0.22 2.11 16 15 H 0.11 2.12 6.99 -51.93 -0.36 1.75 16 16 C -0.15 -2.82 6.56 -24.58 -0.16 -2.98 16 17 C 0.15 3.62 5.89 -2.52 -0.01 3.60 16 18 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 19 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 20 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.30 10.09 55.49 0.56 -25.74 16 23 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.13 2.70 6.72 -3.07 -0.02 2.68 16 28 H 0.07 0.70 5.99 -36.43 -0.22 0.48 16 29 H 0.11 1.41 6.32 -51.93 -0.33 1.08 16 30 H 0.07 0.69 6.91 -51.87 -0.36 0.33 16 31 H 0.19 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.64 7.87 -51.93 -0.41 0.23 16 34 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.14 6.70 -51.93 -0.35 0.79 16 41 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.03 0.55 6.76 -51.93 -0.35 0.20 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -31.83 371.95 -10.43 -42.25 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -6.45 Total: 0.14 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -2.09 Total: 2.44 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.64 Total: -57.00 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.91 Total: -0.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.83 -10.43 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033291157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.352 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds