Wall clock time and date at job start Tue Mar 31 2020 18:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34772 * 119.99836 * 2 1 4 4 O 1.21684 * 119.99956 * 182.28956 * 3 2 1 5 5 C 1.46687 * 120.00121 * 2.28810 * 3 2 1 6 6 C 1.35662 * 126.12659 * 174.02897 * 5 3 2 7 7 N 1.30945 * 114.18844 * 179.97438 * 6 5 3 8 8 C 1.29438 * 117.36432 * 359.97438 * 7 6 5 9 9 C 1.50691 * 124.80481 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.47040 * 90.02398 * 9 8 7 11 11 C 1.53002 * 117.49830 * 243.61991 * 10 9 8 12 12 C 1.52994 * 59.99932 * 252.51090 * 11 10 9 13 13 S 1.70957 * 110.38972 * 0.02562 * 8 7 6 14 14 C 1.46499 * 119.99635 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.63737 * 181.69051 * 14 2 1 16 16 C 1.55153 * 110.72213 * 305.02382 * 14 2 1 17 17 C 1.54916 * 101.57986 * 153.87115 * 16 14 2 18 18 N 1.47427 * 104.82729 * 322.98895 * 17 16 14 19 19 C 1.36939 * 125.64242 * 204.16541 * 18 17 16 20 20 H 1.08003 * 119.99452 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00410 * 359.96209 * 19 18 17 22 22 N 1.31616 * 119.99785 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47077 * 90.00182 * 23 21 19 25 25 H 1.48494 * 109.47024 * 209.99503 * 23 21 19 26 26 H 1.48495 * 109.47244 * 329.99976 * 23 21 19 27 27 C 1.47012 * 108.70535 * 24.13092 * 18 17 16 28 28 H 1.08992 * 109.46717 * 55.21764 * 1 2 3 29 29 H 1.09003 * 109.46491 * 175.21728 * 1 2 3 30 30 H 1.08998 * 109.46953 * 295.21789 * 1 2 3 31 31 H 1.07992 * 122.91099 * 0.24206 * 6 5 3 32 32 H 1.08998 * 109.47256 * 210.02018 * 9 8 7 33 33 H 1.08999 * 109.47493 * 330.02643 * 9 8 7 34 34 H 1.08995 * 115.54967 * 29.32992 * 10 9 8 35 35 H 1.09001 * 117.49856 * 0.02562 * 11 10 9 36 36 H 1.08996 * 117.49718 * 145.01661 * 11 10 9 37 37 H 1.09003 * 117.50063 * 252.50766 * 12 11 10 38 38 H 1.09004 * 117.49736 * 107.48935 * 12 11 10 39 39 H 1.08998 * 111.00509 * 271.93936 * 16 14 2 40 40 H 1.09001 * 111.00516 * 35.79568 * 16 14 2 41 41 H 1.09001 * 110.36285 * 204.15354 * 17 16 14 42 42 H 1.08997 * 110.46284 * 81.87624 * 17 16 14 43 43 H 0.96999 * 119.99804 * 180.02562 * 22 21 19 44 44 H 1.08999 * 109.88438 * 239.51887 * 27 18 17 45 45 H 1.09006 * 109.88308 * 118.35554 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3550 1.1676 -0.0421 5 6 1.4064 2.4370 0.0507 6 6 1.9543 3.6723 0.1705 7 7 1.0803 4.6472 0.1915 8 6 -0.1703 4.3271 0.0975 9 6 -1.3125 5.3100 0.1044 10 6 -1.6183 5.7467 -1.3298 11 6 -1.4116 7.2221 -1.6783 12 6 -2.8277 6.6580 -1.5481 13 16 -0.3430 2.6314 -0.0341 14 6 2.1975 -1.2688 0.0006 15 1 3.2727 -1.0917 0.0306 16 6 1.7507 -2.1601 1.1893 17 6 2.0639 -3.5780 0.6498 18 7 1.7325 -3.5173 -0.7855 19 6 1.3991 -4.5865 -1.5734 20 1 1.1718 -4.4369 -2.6186 21 6 1.3536 -5.8626 -1.0290 22 7 1.6314 -6.0449 0.2445 23 14 0.8996 -7.3211 -2.1042 24 1 2.1298 -7.8923 -2.7089 25 1 0.2284 -8.3558 -1.2771 26 1 -0.0202 -6.8749 -3.1812 27 6 1.8183 -2.1187 -1.2304 28 1 -0.3632 0.5862 -0.8440 29 1 -0.3632 -1.0241 -0.0857 30 1 -0.3633 0.4378 0.9297 31 1 3.0193 3.8377 0.2381 32 1 -2.1951 4.8384 0.5366 33 1 -1.0384 6.1815 0.6989 34 1 -1.3966 5.0108 -2.1026 35 1 -1.0573 7.8815 -0.8860 36 1 -1.0535 7.4570 -2.6806 37 1 -3.4015 6.5219 -2.4648 38 1 -3.4056 6.9464 -0.6700 39 1 2.3373 -1.9435 2.0821 40 1 0.6849 -2.0435 1.3861 41 1 1.4431 -4.3204 1.1514 42 1 3.1195 -3.8129 0.7858 43 1 1.6000 -6.9367 0.6249 44 1 0.8542 -1.7944 -1.6220 45 1 2.5849 -2.0206 -1.9991 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033291157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:13 Heat of formation + Delta-G solvation = 52.453781 kcal Electronic energy + Delta-G solvation = -26066.654297 eV Core-core repulsion = 22405.228000 eV Total energy + Delta-G solvation = -3661.426296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.49311 -40.61351 -38.97098 -38.29227 -36.43469 -34.20891 -32.85811 -31.22087 -30.02587 -29.06376 -28.03133 -26.55729 -25.45401 -23.34157 -23.17514 -22.13924 -21.74036 -21.05330 -19.85886 -19.61430 -18.98221 -17.82107 -17.59737 -16.87225 -16.75186 -16.45361 -15.98771 -15.89512 -15.71433 -15.28091 -14.69977 -14.64571 -14.43135 -14.35575 -14.16301 -13.84135 -13.66998 -13.49534 -13.38978 -12.99325 -12.72700 -12.58495 -12.53633 -12.48304 -12.30904 -12.20789 -12.01308 -11.84574 -11.41884 -11.35911 -11.22781 -10.87404 -10.76557 -10.53923 -10.50666 -10.13358 -9.63902 -8.93287 -7.78595 -5.24404 -0.81997 0.14713 0.57760 1.33098 1.48170 1.50068 1.58462 1.71683 2.04005 2.49880 2.88024 3.02573 3.31921 3.38463 3.68204 3.80064 3.82740 3.89385 3.91892 4.00348 4.04111 4.17109 4.19458 4.22070 4.34366 4.52255 4.54478 4.59842 4.67873 4.68968 4.76253 4.84195 4.86075 4.95263 5.01536 5.03740 5.09639 5.28915 5.31896 5.41204 5.45010 5.56397 5.76404 6.14629 6.27771 6.60647 6.86283 7.08364 7.73820 8.37127 9.23196 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021849 B = 0.002381 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.197992 B =11758.595053 C =12495.713853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.592 5.592 3 C 0.591 3.409 4 O -0.571 6.571 5 C -0.322 4.322 6 C 0.119 3.881 7 N -0.501 5.501 8 C 0.037 3.963 9 C -0.016 4.016 10 C -0.162 4.162 11 C -0.185 4.185 12 C -0.160 4.160 13 S 0.259 5.741 14 C 0.142 3.858 15 H 0.089 0.911 16 C -0.132 4.132 17 C 0.156 3.844 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.064 4.064 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.267 1.267 27 C 0.130 3.870 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.181 0.819 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.084 0.916 42 H -0.013 1.013 43 H 0.249 0.751 44 H 0.045 0.955 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 25.080 0.946 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.322 5.322 3 C 0.380 3.620 4 O -0.453 6.453 5 C -0.446 4.446 6 C -0.040 4.040 7 N -0.216 5.216 8 C -0.236 4.236 9 C -0.056 4.056 10 C -0.181 4.181 11 C -0.222 4.222 12 C -0.197 4.197 13 S 0.518 5.482 14 C 0.038 3.962 15 H 0.107 0.893 16 C -0.171 4.171 17 C 0.030 3.970 18 N -0.348 5.348 19 C -0.368 4.368 20 H 0.099 0.901 21 C -0.256 4.256 22 N -0.597 5.597 23 Si 0.810 3.190 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.192 1.192 27 C 0.004 3.996 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.110 0.890 31 H 0.198 0.802 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.005 0.995 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -12.652 24.762 0.881 27.821 hybrid contribution 1.603 -0.953 -0.550 1.944 sum -11.049 23.809 0.331 26.250 Atomic orbital electron populations 1.22144 0.77902 1.05292 1.03396 1.47648 1.08008 1.04720 1.71853 1.17105 0.86270 0.82673 0.75934 1.90798 1.14484 1.87301 1.52691 1.25545 0.98974 0.98119 1.21996 1.22189 1.01398 0.85452 0.94970 1.66350 1.01190 1.35768 1.18262 1.28359 0.96124 1.00704 0.98369 1.20067 0.92310 0.96561 0.96648 1.22156 1.05287 0.94423 0.96280 1.23116 1.00463 0.95463 1.03140 1.23098 0.90451 1.01779 1.04374 1.84099 0.99677 1.00545 1.63835 1.21901 0.96642 0.81672 0.95951 0.89298 1.23211 1.02125 0.95083 0.96659 1.21741 0.96669 0.94265 0.84295 1.44693 1.80922 1.01918 1.07238 1.19417 1.38691 0.85979 0.92701 0.90086 1.25626 1.02330 0.99953 0.97729 1.70010 1.56279 1.20979 1.12431 0.85037 0.77591 0.78770 0.77649 1.21792 1.21746 1.19210 1.21608 0.98405 0.84879 0.94722 0.89856 0.88017 0.88985 0.80178 0.86414 0.88172 0.88411 0.88277 0.89085 0.87906 0.87082 0.90249 0.89728 0.89789 0.99547 0.94152 0.93751 0.96736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.21 7.29 127.77 0.93 2.14 16 2 N -0.59 -17.64 2.88 -820.66 -2.37 -20.00 16 3 C 0.59 18.74 7.65 86.45 0.66 19.40 16 4 O -0.57 -22.43 16.24 -4.30 -0.07 -22.50 16 5 C -0.32 -8.06 6.33 23.88 0.15 -7.91 16 6 C 0.12 2.96 11.10 84.23 0.93 3.90 16 7 N -0.50 -11.36 10.51 -190.31 -2.00 -13.36 16 8 C 0.04 0.64 6.59 88.46 0.58 1.22 16 9 C -0.02 -0.17 6.07 29.85 0.18 0.02 16 10 C -0.16 -1.77 5.72 -10.79 -0.06 -1.83 16 11 C -0.18 -1.98 10.18 30.59 0.31 -1.67 16 12 C -0.16 -1.23 10.25 30.59 0.31 -0.91 16 13 S 0.26 4.18 17.81 -56.49 -1.01 3.17 16 14 C 0.14 5.20 3.32 46.18 0.15 5.36 16 15 H 0.09 3.61 6.99 -2.38 -0.02 3.59 16 16 C -0.13 -4.81 6.56 31.99 0.21 -4.60 16 17 C 0.16 7.56 5.89 86.86 0.51 8.08 16 18 N -0.62 -31.60 3.39 -691.99 -2.35 -33.95 16 19 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16 20 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 22 N -0.95 -55.30 10.09 21.65 0.22 -55.08 16 23 Si 0.98 44.78 29.55 68.60 2.03 46.81 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 C 0.13 5.44 6.72 86.73 0.58 6.02 16 28 H 0.08 1.50 5.99 -12.25 -0.07 1.42 16 29 H 0.10 2.39 6.32 -2.39 -0.02 2.37 16 30 H 0.09 1.55 6.91 -2.43 -0.02 1.53 16 31 H 0.18 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 34 H 0.10 1.24 8.07 -2.39 -0.02 1.22 16 35 H 0.10 1.01 8.03 -2.39 -0.02 1.00 16 36 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.08 2.78 6.70 -2.39 -0.02 2.76 16 41 H 0.08 4.56 5.87 -2.39 -0.01 4.55 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.04 1.72 6.76 -2.39 -0.02 1.70 16 45 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -70.63 371.95 2.19 -68.44 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.94 Total: 12.64 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.79 Total: 13.82 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -6.50 Total: -122.39 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.01 Total: 3.17 kcal Total: -70.63 2.19 -68.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033291157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.893 kcal (2) G-P(sol) polarization free energy of solvation -70.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds