Wall clock time and date at job start Tue Mar 31 2020 18:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00445 * 2 1 4 4 O 1.21271 * 120.00192 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99687 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47032 * 180.02562 * 5 3 2 7 7 C 1.33647 * 122.75219 * 85.02360 * 6 5 3 8 8 S 1.76197 * 107.92656 * 180.02562 * 7 6 5 9 9 C 1.70980 * 90.27988 * 0.02562 * 8 7 6 10 10 C 1.50702 * 124.91228 * 180.02562 * 9 8 7 11 11 C 1.53007 * 117.50068 * 8.59657 * 10 9 8 12 12 C 1.52998 * 59.99873 * 252.51360 * 11 10 9 13 13 N 1.29023 * 110.17035 * 359.73213 * 9 8 7 14 14 C 1.46508 * 119.99424 * 179.97438 * 2 1 3 15 15 H 1.09001 * 110.63655 * 178.30915 * 14 2 1 16 16 C 1.55160 * 110.87109 * 55.06289 * 14 2 1 17 17 C 1.55127 * 101.48112 * 205.89551 * 16 14 2 18 18 N 1.47424 * 104.72584 * 37.29911 * 17 16 14 19 19 C 1.36934 * 125.64925 * 155.81781 * 18 17 16 20 20 H 1.08001 * 119.99715 * 199.41355 * 19 18 17 21 21 C 1.38808 * 120.00167 * 19.40524 * 19 18 17 22 22 N 1.31615 * 119.99901 * 28.45315 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 208.45051 * 21 19 18 24 24 H 1.48496 * 109.47178 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47151 * 60.00278 * 23 21 19 26 26 H 1.48504 * 109.47376 * 300.00320 * 23 21 19 27 27 C 1.47027 * 108.70017 * 335.55014 * 18 17 16 28 28 H 1.09006 * 109.47421 * 270.00234 * 1 2 3 29 29 H 1.09004 * 109.46945 * 29.99621 * 1 2 3 30 30 H 1.08999 * 109.47591 * 149.99916 * 1 2 3 31 31 H 1.09004 * 109.47088 * 300.00234 * 5 3 2 32 32 H 1.08995 * 109.47344 * 60.00198 * 5 3 2 33 33 H 1.08001 * 126.03110 * 359.97438 * 7 6 5 34 34 H 1.08997 * 115.54620 * 154.30321 * 10 9 8 35 35 H 1.09004 * 117.49591 * 0.02562 * 11 10 9 36 36 H 1.09000 * 117.49842 * 145.01815 * 11 10 9 37 37 H 1.09001 * 117.49453 * 252.50913 * 12 11 10 38 38 H 1.08999 * 117.50448 * 107.49173 * 12 11 10 39 39 H 1.08997 * 111.00302 * 324.13494 * 16 14 2 40 40 H 1.09003 * 111.00183 * 87.98836 * 16 14 2 41 41 H 1.09004 * 110.49760 * 278.45118 * 17 16 14 42 42 H 1.09003 * 110.33666 * 156.05955 * 17 16 14 43 43 H 0.97002 * 119.99894 * 5.65247 * 22 21 19 44 44 H 1.08999 * 109.88441 * 120.70357 * 27 18 17 45 45 H 1.09001 * 109.87882 * 241.71758 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3648 3.6176 -0.0011 7 6 2.9088 4.1033 -1.1211 8 16 3.9865 5.4231 -0.6724 9 6 3.5991 5.1901 0.9765 10 6 4.1606 5.9993 2.1171 11 6 4.9899 7.2360 1.7649 12 6 5.6777 5.9846 2.3141 13 7 2.7519 4.2252 1.1024 14 6 2.1974 -1.2689 0.0006 15 1 3.2725 -1.0919 -0.0296 16 6 1.7547 -2.1632 -1.1875 17 6 2.0757 -3.5802 -0.6438 18 7 1.7363 -3.5173 0.7895 19 6 1.4056 -4.5861 1.5790 20 1 0.8784 -4.4284 2.5083 21 6 1.7478 -5.8723 1.1848 22 7 2.8062 -6.0689 0.4275 23 14 0.7063 -7.3243 1.7294 24 1 1.2799 -8.5788 1.1795 25 1 -0.6815 -7.1532 1.2293 26 1 0.6928 -7.3952 3.2127 27 6 1.8181 -2.1177 1.2323 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 2.7215 3.7488 -2.1239 34 1 3.5375 6.0484 3.0101 35 1 5.1290 7.4645 0.7082 36 1 4.9123 8.0990 2.4262 37 1 6.0528 6.0243 3.3368 38 1 6.2698 5.3895 1.6188 39 1 0.6890 -2.0495 -1.3863 40 1 2.3423 -1.9466 -2.0797 41 1 3.1336 -3.8082 -0.7736 42 1 1.4613 -4.3271 -1.1467 43 1 3.3932 -5.3271 0.2125 44 1 0.8525 -1.7950 1.6217 45 1 2.5813 -2.0170 2.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033477040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:17 Heat of formation + Delta-G solvation = 68.534359 kcal Electronic energy + Delta-G solvation = -26085.407315 eV Core-core repulsion = 22424.678325 eV Total energy + Delta-G solvation = -3660.728990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55691 -39.53129 -37.71111 -37.28049 -34.93081 -32.64352 -31.85190 -29.29631 -28.61910 -27.53305 -26.48092 -25.82491 -24.22787 -22.88254 -22.00671 -20.78269 -20.30395 -19.83898 -18.79743 -17.88382 -17.51931 -17.25127 -16.49035 -16.08830 -15.39581 -15.11608 -14.64339 -14.42239 -14.22869 -13.96631 -13.67939 -13.48121 -13.28576 -13.09096 -12.95332 -12.66198 -12.35561 -12.33948 -12.09317 -12.04121 -11.59080 -11.48730 -11.19706 -11.04274 -10.98437 -10.74539 -10.69786 -10.54591 -10.09178 -10.01535 -9.84197 -9.74747 -9.53725 -9.51614 -8.83020 -8.46962 -8.36893 -6.93077 -6.10291 -3.16540 0.49096 1.13115 1.50991 2.44436 2.69092 3.12860 3.40434 3.50304 3.53561 3.66596 3.71960 4.33424 4.47127 4.49016 4.57707 4.60592 4.80846 4.89935 5.06707 5.08750 5.16383 5.20742 5.21443 5.28037 5.37280 5.38922 5.47062 5.52496 5.58717 5.62383 5.63435 5.64821 5.81175 5.91560 5.99757 6.13473 6.33946 6.46881 6.63709 6.86812 6.91905 7.02118 7.51327 7.57886 7.81222 8.25646 8.49018 9.01709 9.81020 10.36748 11.21768 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.002183 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.660952 B =12823.259717 C =13172.728811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.517 3.483 4 O -0.535 6.535 5 C -0.066 4.066 6 C 0.093 3.907 7 C -0.245 4.245 8 S 0.118 5.882 9 C 0.082 3.918 10 C -0.086 4.086 11 C -0.169 4.169 12 C -0.159 4.159 13 N -0.461 5.461 14 C 0.128 3.872 15 H 0.103 0.897 16 C -0.144 4.144 17 C 0.146 3.854 18 N -0.600 5.600 19 C -0.338 4.338 20 H 0.064 0.936 21 C -0.025 4.025 22 N -0.914 5.914 23 Si 1.066 2.934 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.128 3.872 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.176 0.824 34 H 0.133 0.867 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.269 0.731 44 H 0.030 0.970 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 27.680 -3.272 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.334 5.334 3 C 0.304 3.696 4 O -0.412 6.412 5 C -0.109 4.109 6 C -0.039 4.039 7 C -0.384 4.384 8 S 0.374 5.626 9 C -0.196 4.196 10 C -0.108 4.108 11 C -0.207 4.207 12 C -0.198 4.198 13 N -0.175 5.175 14 C 0.025 3.975 15 H 0.121 0.879 16 C -0.183 4.183 17 C 0.020 3.980 18 N -0.327 5.327 19 C -0.465 4.465 20 H 0.081 0.919 21 C -0.227 4.227 22 N -0.554 5.554 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.002 3.998 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.194 0.806 34 H 0.151 0.849 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.668 26.492 -3.388 26.716 hybrid contribution -0.508 0.807 0.244 0.985 sum -1.176 27.299 -3.144 27.505 Atomic orbital electron populations 1.21835 0.79633 1.03210 1.02302 1.47808 1.07008 1.05741 1.72861 1.20301 0.88012 0.84832 0.76435 1.90705 1.13880 1.87155 1.49451 1.20239 0.96297 0.88648 1.05698 1.19444 0.99917 0.97812 0.86678 1.26737 1.04675 1.02913 1.04103 1.83721 1.43504 1.32106 1.03305 1.25997 0.98733 0.97977 0.96908 1.20408 0.94661 0.99020 0.96672 1.23146 1.02886 0.92155 1.02550 1.23157 0.92648 1.00419 1.03547 1.65884 1.12894 1.07389 1.31290 1.22185 0.97272 0.81455 0.96615 0.87853 1.23223 1.01044 0.97287 0.96767 1.21555 0.98271 0.92716 0.85490 1.44513 1.82018 1.01627 1.04579 1.19704 1.34663 0.85929 1.06248 0.91867 1.25807 0.98127 0.98561 1.00228 1.70779 1.10497 1.34471 1.39629 0.83513 0.75444 0.76032 0.75473 1.21077 1.22079 1.21980 1.21573 0.98137 0.86261 0.93878 0.92241 0.91300 0.90087 0.87188 0.86991 0.80632 0.84890 0.88362 0.87232 0.87345 0.88123 0.91143 0.91625 0.95332 0.92875 0.91994 0.95238 0.95667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.13 59.85 0.55 1.38 16 2 N -0.60 -9.12 2.89 -171.83 -0.50 -9.62 16 3 C 0.52 8.02 7.67 -10.99 -0.08 7.93 16 4 O -0.54 -10.54 15.40 5.56 0.09 -10.46 16 5 C -0.07 -0.75 4.67 -29.04 -0.14 -0.89 16 6 C 0.09 1.21 5.23 -84.22 -0.44 0.77 16 7 C -0.25 -2.77 11.14 29.12 0.32 -2.44 16 8 S 0.12 1.16 21.94 -107.50 -2.36 -1.20 16 9 C 0.08 0.95 7.04 -13.46 -0.09 0.85 16 10 C -0.09 -0.75 6.33 -91.77 -0.58 -1.33 16 11 C -0.17 -1.03 10.01 -26.73 -0.27 -1.29 16 12 C -0.16 -1.16 10.23 -26.73 -0.27 -1.43 16 13 N -0.46 -6.45 10.53 -8.05 -0.08 -6.54 16 14 C 0.13 2.40 3.35 -66.09 -0.22 2.18 16 15 H 0.10 2.14 6.99 -51.93 -0.36 1.78 16 16 C -0.14 -2.62 6.63 -24.46 -0.16 -2.78 16 17 C 0.15 3.41 5.39 -2.41 -0.01 3.40 16 18 N -0.60 -15.52 3.26 -169.93 -0.55 -16.07 16 19 C -0.34 -9.68 10.00 -15.06 -0.15 -9.83 16 20 H 0.06 1.81 7.97 -52.49 -0.42 1.39 16 21 C -0.03 -0.72 5.10 -17.43 -0.09 -0.81 16 22 N -0.91 -27.96 13.01 55.49 0.72 -27.24 16 23 Si 1.07 25.50 30.00 -169.99 -5.10 20.40 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.13 2.82 6.88 -3.06 -0.02 2.80 16 28 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 29 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 30 H 0.08 0.98 6.09 -51.93 -0.32 0.66 16 31 H 0.11 0.87 7.40 -51.93 -0.38 0.49 16 32 H 0.11 1.15 8.11 -51.93 -0.42 0.73 16 33 H 0.18 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 0.57 7.22 -51.93 -0.38 0.20 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.17 6.11 -51.93 -0.32 0.86 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.03 0.72 6.81 -51.93 -0.35 0.37 16 42 H 0.05 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.27 8.30 6.19 -40.82 -0.25 8.05 16 44 H 0.03 0.63 6.94 -51.93 -0.36 0.27 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -35.96 376.30 -10.26 -46.22 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.48 Total: 0.32 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.66 Total: -1.50 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.41 Total: -59.46 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.10 Total: 20.40 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.36 Total: -1.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.96 -10.26 -46.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033477040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.751 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds