Wall clock time and date at job start Tue Mar 31 2020 18:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00445 * 2 1 4 4 O 1.21271 * 120.00192 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99687 * 359.97438 * 3 2 1 6 6 C 1.50699 * 109.47032 * 180.02562 * 5 3 2 7 7 C 1.33647 * 122.75219 * 85.02360 * 6 5 3 8 8 S 1.76197 * 107.92656 * 180.02562 * 7 6 5 9 9 C 1.70980 * 90.27988 * 0.02562 * 8 7 6 10 10 C 1.50702 * 124.91228 * 180.02562 * 9 8 7 11 11 C 1.53007 * 117.50068 * 8.59657 * 10 9 8 12 12 C 1.52998 * 59.99873 * 252.51360 * 11 10 9 13 13 N 1.29023 * 110.17035 * 359.73213 * 9 8 7 14 14 C 1.46508 * 119.99424 * 179.97438 * 2 1 3 15 15 H 1.09001 * 110.63655 * 178.30915 * 14 2 1 16 16 C 1.55160 * 110.87109 * 55.06289 * 14 2 1 17 17 C 1.55127 * 101.48112 * 205.89551 * 16 14 2 18 18 N 1.47424 * 104.72584 * 37.29911 * 17 16 14 19 19 C 1.36934 * 125.64925 * 155.81781 * 18 17 16 20 20 H 1.08001 * 119.99715 * 199.41355 * 19 18 17 21 21 C 1.38808 * 120.00167 * 19.40524 * 19 18 17 22 22 N 1.31615 * 119.99901 * 28.45315 * 21 19 18 23 23 Si 1.86798 * 119.99961 * 208.45051 * 21 19 18 24 24 H 1.48496 * 109.47178 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47151 * 60.00278 * 23 21 19 26 26 H 1.48504 * 109.47376 * 300.00320 * 23 21 19 27 27 C 1.47027 * 108.70017 * 335.55014 * 18 17 16 28 28 H 1.09006 * 109.47421 * 270.00234 * 1 2 3 29 29 H 1.09004 * 109.46945 * 29.99621 * 1 2 3 30 30 H 1.08999 * 109.47591 * 149.99916 * 1 2 3 31 31 H 1.09004 * 109.47088 * 300.00234 * 5 3 2 32 32 H 1.08995 * 109.47344 * 60.00198 * 5 3 2 33 33 H 1.08001 * 126.03110 * 359.97438 * 7 6 5 34 34 H 1.08997 * 115.54620 * 154.30321 * 10 9 8 35 35 H 1.09004 * 117.49591 * 0.02562 * 11 10 9 36 36 H 1.09000 * 117.49842 * 145.01815 * 11 10 9 37 37 H 1.09001 * 117.49453 * 252.50913 * 12 11 10 38 38 H 1.08999 * 117.50448 * 107.49173 * 12 11 10 39 39 H 1.08997 * 111.00302 * 324.13494 * 16 14 2 40 40 H 1.09003 * 111.00183 * 87.98836 * 16 14 2 41 41 H 1.09004 * 110.49760 * 278.45118 * 17 16 14 42 42 H 1.09003 * 110.33666 * 156.05955 * 17 16 14 43 43 H 0.97002 * 119.99894 * 5.65247 * 22 21 19 44 44 H 1.08999 * 109.88441 * 120.70357 * 27 18 17 45 45 H 1.09001 * 109.87882 * 241.71758 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3648 3.6176 -0.0011 7 6 2.9088 4.1033 -1.1211 8 16 3.9865 5.4231 -0.6724 9 6 3.5991 5.1901 0.9765 10 6 4.1606 5.9993 2.1171 11 6 4.9899 7.2360 1.7649 12 6 5.6777 5.9846 2.3141 13 7 2.7519 4.2252 1.1024 14 6 2.1974 -1.2689 0.0006 15 1 3.2725 -1.0919 -0.0296 16 6 1.7547 -2.1632 -1.1875 17 6 2.0757 -3.5802 -0.6438 18 7 1.7363 -3.5173 0.7895 19 6 1.4056 -4.5861 1.5790 20 1 0.8784 -4.4284 2.5083 21 6 1.7478 -5.8723 1.1848 22 7 2.8062 -6.0689 0.4275 23 14 0.7063 -7.3243 1.7294 24 1 1.2799 -8.5788 1.1795 25 1 -0.6815 -7.1532 1.2293 26 1 0.6928 -7.3952 3.2127 27 6 1.8181 -2.1177 1.2323 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 0.7591 2.5298 -0.8908 32 1 0.7585 2.5302 0.8891 33 1 2.7215 3.7488 -2.1239 34 1 3.5375 6.0484 3.0101 35 1 5.1290 7.4645 0.7082 36 1 4.9123 8.0990 2.4262 37 1 6.0528 6.0243 3.3368 38 1 6.2698 5.3895 1.6188 39 1 0.6890 -2.0495 -1.3863 40 1 2.3423 -1.9466 -2.0797 41 1 3.1336 -3.8082 -0.7736 42 1 1.4613 -4.3271 -1.1467 43 1 3.3932 -5.3271 0.2125 44 1 0.8525 -1.7950 1.6217 45 1 2.5813 -2.0170 2.0040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033477040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:16 Heat of formation + Delta-G solvation = 45.465448 kcal Electronic energy + Delta-G solvation = -26086.407658 eV Core-core repulsion = 22424.678325 eV Total energy + Delta-G solvation = -3661.729333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61000 -40.63874 -39.13501 -38.10314 -36.43036 -34.36411 -33.00434 -31.09796 -29.90373 -28.78313 -27.69261 -26.70442 -26.18033 -23.40182 -23.01349 -22.24664 -21.86294 -20.82390 -20.02619 -19.61047 -18.72907 -18.44703 -17.41690 -17.17825 -16.50025 -16.29408 -16.09992 -15.75289 -15.41259 -15.30943 -15.17061 -14.90239 -14.44555 -14.35067 -14.20286 -13.85889 -13.50602 -13.44188 -13.18822 -12.98875 -12.66724 -12.63480 -12.54825 -12.53606 -12.44476 -12.23912 -11.90222 -11.84987 -11.72730 -11.62293 -11.53884 -11.01010 -10.68003 -10.55963 -10.34040 -9.73228 -9.62766 -9.08596 -8.38062 -5.42266 -0.32327 0.35618 0.69572 1.48027 1.53361 1.57130 1.65079 1.84577 2.03163 2.62781 2.74986 3.01132 3.13703 3.43373 3.56235 3.65160 3.72219 3.77476 3.84057 3.96313 4.04865 4.10659 4.19286 4.21573 4.31735 4.36741 4.39419 4.45963 4.60013 4.67953 4.71841 4.72684 4.84424 4.88161 4.92816 4.96336 4.98457 5.00592 5.11672 5.12965 5.18768 5.45089 5.63655 6.25140 6.33620 6.75122 6.82102 7.06775 7.63685 8.21624 8.92410 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.025046 B = 0.002183 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.660952 B =12823.259717 C =13172.728811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.515 3.485 4 O -0.585 6.585 5 C -0.055 4.055 6 C 0.067 3.933 7 C -0.256 4.256 8 S 0.157 5.843 9 C 0.065 3.935 10 C -0.110 4.110 11 C -0.145 4.145 12 C -0.163 4.163 13 N -0.500 5.500 14 C 0.143 3.857 15 H 0.078 0.922 16 C -0.121 4.121 17 C 0.147 3.853 18 N -0.620 5.620 19 C -0.350 4.350 20 H 0.059 0.941 21 C -0.077 4.077 22 N -0.941 5.941 23 Si 1.121 2.879 24 H -0.291 1.291 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.129 3.871 28 H 0.063 0.937 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.152 0.848 32 H 0.124 0.876 33 H 0.196 0.804 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.002 0.998 42 H 0.033 0.967 43 H 0.253 0.747 44 H 0.045 0.955 45 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 29.851 -3.947 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.331 5.331 3 C 0.304 3.696 4 O -0.465 6.465 5 C -0.097 4.097 6 C -0.065 4.065 7 C -0.395 4.395 8 S 0.413 5.587 9 C -0.212 4.212 10 C -0.132 4.132 11 C -0.183 4.183 12 C -0.202 4.202 13 N -0.215 5.215 14 C 0.038 3.962 15 H 0.096 0.904 16 C -0.159 4.159 17 C 0.021 3.979 18 N -0.347 5.347 19 C -0.479 4.479 20 H 0.077 0.923 21 C -0.273 4.273 22 N -0.583 5.583 23 Si 0.944 3.056 24 H -0.217 1.217 25 H -0.200 1.200 26 H -0.201 1.201 27 C 0.003 3.997 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.170 0.830 32 H 0.142 0.858 33 H 0.213 0.787 34 H 0.151 0.849 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.105 0.895 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -2.624 28.717 -4.061 29.122 hybrid contribution 0.168 0.228 0.497 0.572 sum -2.456 28.945 -3.564 29.267 Atomic orbital electron populations 1.22153 0.76818 1.05315 1.03270 1.47826 1.08535 1.04195 1.72527 1.21083 0.87640 0.85952 0.74909 1.90685 1.16322 1.87864 1.51614 1.20299 0.95852 0.85353 1.08221 1.19740 1.01067 0.98654 0.87010 1.27105 1.04459 1.03173 1.04764 1.83484 1.42457 1.31048 1.01717 1.26505 0.98328 0.97744 0.98608 1.20568 0.95360 1.00896 0.96392 1.23265 0.99968 0.91864 1.03218 1.23233 0.91435 1.01251 1.04274 1.65918 1.14453 1.08680 1.32419 1.21678 0.96484 0.83003 0.95027 0.90409 1.23069 1.02961 0.93063 0.96844 1.21479 0.96183 0.95589 0.84611 1.44786 1.81811 1.02496 1.05609 1.19992 1.34120 0.87172 1.06578 0.92293 1.27340 0.98383 1.01595 1.00028 1.70909 1.11746 1.33818 1.41783 0.82801 0.74431 0.72316 0.76066 1.21705 1.20018 1.20116 1.21634 0.97910 0.85291 0.94893 0.91887 0.86754 0.90412 0.83005 0.85762 0.78693 0.84879 0.88001 0.84880 0.85974 0.89261 0.88598 0.89514 0.98066 0.94902 0.93721 0.93723 0.98440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.27 9.13 127.77 1.17 2.43 16 2 N -0.60 -17.11 2.89 -815.94 -2.35 -19.46 16 3 C 0.51 15.26 7.67 87.66 0.67 15.94 16 4 O -0.58 -23.22 15.40 -3.00 -0.05 -23.27 16 5 C -0.06 -1.12 4.67 29.10 0.14 -0.98 16 6 C 0.07 1.65 5.23 41.52 0.22 1.87 16 7 C -0.26 -5.35 11.14 66.78 0.74 -4.60 16 8 S 0.16 2.88 21.94 -56.49 -1.24 1.64 16 9 C 0.07 1.48 7.04 88.52 0.62 2.10 16 10 C -0.11 -1.86 6.33 -11.54 -0.07 -1.93 16 11 C -0.15 -1.48 10.01 30.60 0.31 -1.17 16 12 C -0.16 -2.23 10.23 30.59 0.31 -1.91 16 13 N -0.50 -13.80 10.53 -179.40 -1.89 -15.68 16 14 C 0.14 5.35 3.35 46.18 0.15 5.50 16 15 H 0.08 3.33 6.99 -2.39 -0.02 3.32 16 16 C -0.12 -4.27 6.63 32.06 0.21 -4.05 16 17 C 0.15 7.09 5.39 86.93 0.47 7.56 16 18 N -0.62 -32.84 3.26 -691.54 -2.26 -35.09 16 19 C -0.35 -20.46 10.00 84.03 0.84 -19.62 16 20 H 0.06 3.42 7.97 -2.91 -0.02 3.40 16 21 C -0.08 -4.54 5.10 84.86 0.43 -4.11 16 22 N -0.94 -59.37 13.01 21.65 0.28 -59.09 16 23 Si 1.12 51.61 30.00 68.60 2.06 53.67 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 C 0.13 5.78 6.88 86.73 0.60 6.38 16 28 H 0.06 1.20 7.89 -2.38 -0.02 1.19 16 29 H 0.11 1.19 6.44 -2.38 -0.02 1.17 16 30 H 0.08 1.59 6.09 -2.39 -0.01 1.58 16 31 H 0.15 1.70 7.40 -2.38 -0.02 1.68 16 32 H 0.12 2.21 8.11 -2.39 -0.02 2.19 16 33 H 0.20 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.10 0.97 7.22 -2.39 -0.02 0.95 16 36 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.10 2.94 6.11 -2.39 -0.01 2.92 16 40 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.00 0.08 6.81 -2.39 -0.02 0.07 16 42 H 0.03 1.69 8.08 -2.39 -0.02 1.67 16 43 H 0.25 16.38 6.19 -92.71 -0.57 15.81 16 44 H 0.04 1.87 6.94 -2.39 -0.02 1.85 16 45 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -82.53 376.30 2.56 -79.97 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 1.20 Total: 13.91 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 6.81 Total: 3.40 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -6.22 Total: -129.32 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.27 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.67 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -1.24 Total: 1.64 kcal Total: -82.53 2.56 -79.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033477040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.437 kcal (2) G-P(sol) polarization free energy of solvation -82.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds