Wall clock time and date at job start Tue Mar 31 2020 18:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00151 * 2 1 4 4 O 1.21690 * 119.99849 * 178.51096 * 3 2 1 5 5 C 1.46676 * 120.00279 * 358.50556 * 3 2 1 6 6 S 1.76220 * 126.12994 * 8.66304 * 5 3 2 7 7 C 1.70952 * 90.31655 * 179.97438 * 6 5 3 8 8 N 1.29431 * 110.38840 * 0.34229 * 7 6 5 9 9 C 1.30949 * 117.36745 * 359.73257 * 8 7 6 10 10 C 1.50690 * 122.90541 * 179.97438 * 9 8 7 11 11 C 1.54265 * 110.03443 * 57.90454 * 10 9 8 12 12 C 1.54969 * 104.16019 * 217.13372 * 11 10 9 13 13 C 1.54890 * 102.77389 * 37.89147 * 12 11 10 14 14 C 1.53877 * 110.03270 * 300.68591 * 10 9 8 15 15 C 1.46504 * 119.99615 * 180.02562 * 2 1 3 16 16 C 1.53498 * 114.20486 * 299.99762 * 15 2 1 17 17 N 1.47066 * 87.98493 * 87.72133 * 16 15 2 18 18 C 1.36934 * 136.05652 * 207.09097 * 17 16 15 19 19 H 1.07999 * 120.00237 * 7.91819 * 18 17 16 20 20 C 1.38809 * 119.99901 * 187.93037 * 18 17 16 21 21 N 1.31623 * 120.00224 * 194.84501 * 20 18 17 22 22 Si 1.86799 * 120.00042 * 14.83889 * 20 18 17 23 23 H 1.48498 * 109.47264 * 269.99942 * 22 20 18 24 24 H 1.48501 * 109.47280 * 30.00695 * 22 20 18 25 25 H 1.48504 * 109.46767 * 150.00370 * 22 20 18 26 26 C 1.47062 * 87.88356 * 27.34148 * 17 16 15 27 27 H 1.09001 * 109.47297 * 276.31192 * 1 2 3 28 28 H 1.09001 * 109.46679 * 36.31065 * 1 2 3 29 29 H 1.08998 * 109.47484 * 156.30598 * 1 2 3 30 30 H 1.07994 * 124.80449 * 180.02562 * 7 6 5 31 31 H 1.08998 * 110.01801 * 179.29762 * 10 9 8 32 32 H 1.08997 * 110.48685 * 335.78596 * 11 10 9 33 33 H 1.08999 * 110.48342 * 98.42868 * 11 10 9 34 34 H 1.09000 * 110.72231 * 279.57904 * 12 11 10 35 35 H 1.09001 * 110.76332 * 156.21741 * 12 11 10 36 36 H 1.09004 * 110.48549 * 203.40446 * 13 12 11 37 37 H 1.08994 * 110.60443 * 80.81580 * 13 12 11 38 38 H 1.09006 * 110.03598 * 238.57239 * 14 10 9 39 39 H 1.09004 * 110.03268 * 359.95472 * 14 10 9 40 40 H 1.09003 * 113.28214 * 166.93597 * 15 2 1 41 41 H 1.09002 * 113.46832 * 332.93771 * 16 15 2 42 42 H 1.09000 * 113.46713 * 202.50100 * 16 15 2 43 43 H 0.97003 * 119.99439 * 354.92407 * 21 20 18 44 44 H 1.08999 * 113.46588 * 87.44155 * 26 17 16 45 45 H 1.09010 * 113.46720 * 217.87794 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3555 1.1673 0.0274 5 6 1.4060 2.4372 -0.0331 6 16 -0.3364 2.6362 0.1394 7 6 -0.1694 4.3292 -0.0289 8 7 1.0742 4.6448 -0.1999 9 6 1.9472 3.6688 -0.2090 10 6 3.4250 3.8940 -0.3989 11 6 3.9594 4.8440 0.6928 12 6 5.0128 5.7113 -0.0418 13 6 4.3659 5.9315 -1.4318 14 6 3.6837 4.5848 -1.7493 15 6 2.1974 -1.2688 -0.0006 16 6 1.9058 -2.1643 1.2115 17 7 0.7771 -2.7295 0.4569 18 6 -0.4243 -3.3091 0.7665 19 1 -0.7733 -3.3157 1.7885 20 6 -1.1934 -3.8884 -0.2333 21 7 -2.4565 -4.1808 -0.0059 22 14 -0.4361 -4.2530 -1.9015 23 1 -0.6107 -3.0775 -2.7919 24 1 1.0119 -4.5381 -1.7362 25 1 -1.1075 -5.4333 -2.5026 26 6 1.5093 -2.4041 -0.7762 27 1 -0.3634 0.1130 1.0214 28 1 -0.3633 0.8281 -0.6086 29 1 -0.3634 -0.9410 -0.4130 30 1 -0.9863 5.0349 -0.0019 31 1 3.9556 2.9428 -0.3585 32 1 3.1553 5.4687 1.0818 33 1 4.4260 4.2760 1.4976 34 1 5.9567 5.1743 -0.1358 35 1 5.1571 6.6617 0.4720 36 1 5.1293 6.1573 -2.1764 37 1 3.6277 6.7323 -1.3888 38 1 4.3405 3.9692 -2.3640 39 1 2.7403 4.7565 -2.2677 40 1 3.2575 -1.1542 -0.2268 41 1 1.6005 -1.6088 2.0983 42 1 2.6956 -2.8869 1.4174 43 1 -2.8301 -4.0601 0.8811 44 1 2.1945 -3.1898 -1.0944 45 1 0.8661 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043242425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:10 Heat of formation + Delta-G solvation = 82.861732 kcal Electronic energy + Delta-G solvation = -27390.041399 eV Core-core repulsion = 23729.933691 eV Total energy + Delta-G solvation = -3660.107709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.70169 -39.79657 -37.94681 -37.39597 -34.49039 -32.46997 -31.29220 -28.88731 -28.71325 -28.06299 -26.58170 -25.41482 -25.35846 -23.26777 -21.59241 -20.79473 -20.66674 -19.35710 -18.44956 -18.12770 -17.46442 -16.51206 -16.44331 -15.75196 -15.56267 -15.24198 -15.00853 -14.63349 -14.27949 -13.92899 -13.82359 -13.40839 -13.34033 -13.28131 -12.97427 -12.87034 -12.68974 -12.05560 -11.65419 -11.50991 -11.42416 -11.17522 -11.10581 -10.96205 -10.86299 -10.80386 -10.66515 -10.62867 -10.30642 -9.79344 -9.70176 -9.49494 -9.38693 -9.31367 -8.90831 -8.80815 -8.27771 -7.30483 -6.40754 -3.35051 0.24376 1.20910 1.61380 2.43890 3.05390 3.19755 3.31344 3.40278 3.53428 4.05822 4.47588 4.51704 4.61181 4.64559 4.67129 4.78336 5.03957 5.11648 5.12106 5.28188 5.29657 5.42132 5.52128 5.61047 5.63114 5.69314 5.72391 5.76975 5.80648 5.82147 5.85416 5.98565 6.11369 6.13054 6.15703 6.19373 6.22219 6.29180 6.31024 6.47352 6.52790 6.85813 6.98729 7.49991 7.64324 8.13486 8.19511 8.86190 9.37933 10.24867 11.08195 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.019422 B = 0.003422 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.326458 B = 8179.830273 C = 8827.353292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.572 5.572 3 C 0.595 3.405 4 O -0.532 6.532 5 C -0.296 4.296 6 S 0.206 5.794 7 C -0.010 4.010 8 N -0.474 5.474 9 C 0.152 3.848 10 C -0.044 4.044 11 C -0.109 4.109 12 C -0.122 4.122 13 C -0.120 4.120 14 C -0.109 4.109 15 C 0.100 3.900 16 C 0.106 3.894 17 N -0.622 5.622 18 C -0.305 4.305 19 H 0.083 0.917 20 C -0.021 4.021 21 N -0.929 5.929 22 Si 1.056 2.944 23 H -0.293 1.293 24 H -0.281 1.281 25 H -0.294 1.294 26 C 0.090 3.910 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.197 0.803 31 H 0.127 0.873 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.048 0.952 42 H 0.049 0.951 43 H 0.262 0.738 44 H 0.061 0.939 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.757 18.494 -1.360 20.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.302 5.302 3 C 0.382 3.618 4 O -0.412 6.412 5 C -0.419 4.419 6 S 0.464 5.536 7 C -0.304 4.304 8 N -0.187 5.187 9 C 0.014 3.986 10 C -0.065 4.065 11 C -0.147 4.147 12 C -0.160 4.160 13 C -0.157 4.157 14 C -0.147 4.147 15 C -0.005 4.005 16 C -0.021 4.021 17 N -0.351 5.351 18 C -0.431 4.431 19 H 0.101 0.899 20 C -0.221 4.221 21 N -0.570 5.570 22 Si 0.888 3.112 23 H -0.221 1.221 24 H -0.207 1.207 25 H -0.221 1.221 26 C -0.036 4.036 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.213 0.787 31 H 0.145 0.855 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.944 17.722 -2.689 19.606 hybrid contribution 0.738 0.556 1.513 1.773 sum 8.682 18.278 -1.176 20.269 Atomic orbital electron populations 1.22177 0.78733 1.04169 1.02424 1.47199 1.07295 1.04753 1.70958 1.16740 0.86520 0.81744 0.76776 1.90668 1.12487 1.86106 1.51930 1.25517 0.96832 0.99167 1.20425 1.84870 1.03399 1.01445 1.63894 1.29168 0.97579 1.02132 1.01489 1.66122 1.00640 1.35581 1.16380 1.20548 0.97431 0.85566 0.95078 1.21043 0.87193 1.02704 0.95557 1.22362 0.98264 0.97038 0.97080 1.22485 0.98223 0.99418 0.95844 1.22317 0.99201 0.97425 0.96786 1.22109 1.00523 0.96018 0.96078 1.22566 0.95771 0.82385 0.99756 1.22820 0.90767 0.93518 0.95037 1.46467 1.15028 1.72454 1.01175 1.20137 0.91336 1.34827 0.96849 0.89948 1.25731 0.95259 0.97566 1.03563 1.70909 1.10798 1.51812 1.23515 0.83862 0.75103 0.76743 0.75531 1.22089 1.20714 1.22145 1.23137 0.94370 0.93642 0.92435 0.91597 0.92434 0.85892 0.78659 0.85549 0.91220 0.91625 0.91462 0.91748 0.92003 0.91580 0.91637 0.91883 0.87204 0.93336 0.93353 0.92730 0.92123 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 8.19 59.85 0.49 1.64 16 2 N -0.57 -9.73 3.12 -175.10 -0.55 -10.28 16 3 C 0.59 9.93 7.62 -12.86 -0.10 9.83 16 4 O -0.53 -9.61 13.58 5.20 0.07 -9.54 16 5 C -0.30 -4.35 6.25 -37.10 -0.23 -4.58 16 6 S 0.21 2.42 18.17 -107.50 -1.95 0.47 16 7 C -0.01 -0.10 12.22 51.75 0.63 0.53 16 8 N -0.47 -6.18 9.98 -11.54 -0.12 -6.30 16 9 C 0.15 2.15 5.14 -83.89 -0.43 1.72 16 10 C -0.04 -0.59 3.18 -90.66 -0.29 -0.87 16 11 C -0.11 -1.27 6.35 -25.03 -0.16 -1.43 16 12 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 13 C -0.12 -1.17 6.83 -25.07 -0.17 -1.34 16 14 C -0.11 -1.27 6.42 -25.61 -0.16 -1.43 16 15 C 0.10 1.75 4.67 -67.68 -0.32 1.43 16 16 C 0.11 2.00 8.31 -8.52 -0.07 1.93 16 17 N -0.62 -13.92 2.31 -184.64 -0.43 -14.35 16 18 C -0.31 -8.04 10.44 -15.06 -0.16 -8.19 16 19 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 20 C -0.02 -0.59 5.50 -17.43 -0.10 -0.68 16 21 N -0.93 -27.54 13.70 55.49 0.76 -26.78 16 22 Si 1.06 24.98 25.50 -169.99 -4.34 20.64 16 23 H -0.29 -6.60 6.97 56.52 0.39 -6.21 16 24 H -0.28 -6.18 5.63 56.52 0.32 -5.86 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.09 1.77 4.63 -8.39 -0.04 1.73 16 27 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 28 H 0.06 0.84 4.49 -22.89 -0.10 0.74 16 29 H 0.12 2.44 5.04 -51.93 -0.26 2.18 16 30 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.90 5.02 -51.93 -0.26 1.64 16 32 H 0.07 0.85 7.56 -51.93 -0.39 0.46 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.78 7.59 -51.93 -0.39 0.39 16 40 H 0.11 1.79 7.30 -51.93 -0.38 1.42 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.26 7.70 8.73 -40.82 -0.36 7.35 16 44 H 0.06 1.15 7.01 -51.93 -0.36 0.79 16 45 H 0.06 1.13 5.47 -51.92 -0.28 0.84 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -30.36 356.08 -8.77 -39.13 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.32 Total: 2.71 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.27 Total: -1.08 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.33 Total: -57.70 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -4.34 Total: 20.64 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -1.95 Total: 0.47 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.36 -8.77 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043242425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.991 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds