Wall clock time and date at job start Tue Mar 31 2020 18:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99627 * 2 1 4 4 N 1.34772 * 120.00385 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99731 * 5.13653 * 4 2 1 6 6 C 1.50697 * 109.47146 * 271.66457 * 5 4 2 7 7 N 1.29025 * 124.92151 * 89.95928 * 6 5 4 8 8 C 1.31776 * 117.12910 * 180.02562 * 7 6 5 9 9 C 1.33637 * 114.50200 * 359.97438 * 8 7 6 10 10 S 1.70978 * 124.91510 * 270.00032 * 6 5 4 11 11 C 1.46498 * 120.00345 * 185.13024 * 4 2 1 12 12 H 1.08996 * 115.55007 * 152.25515 * 11 4 2 13 13 C 1.53033 * 117.50026 * 6.57703 * 11 4 2 14 14 C 1.52808 * 117.50279 * 297.99140 * 11 4 2 15 15 C 1.53182 * 117.71756 * 359.85725 * 14 11 4 16 16 C 1.53344 * 108.77277 * 158.89279 * 15 14 11 17 17 N 1.46840 * 108.82050 * 51.30323 * 16 15 14 18 18 C 1.36942 * 120.38148 * 123.11842 * 17 16 15 19 19 H 1.07997 * 120.00408 * 330.90006 * 18 17 16 20 20 C 1.38813 * 119.99451 * 150.89084 * 18 17 16 21 21 N 1.31619 * 119.99618 * 166.29816 * 20 18 17 22 22 Si 1.86800 * 120.00426 * 346.30695 * 20 18 17 23 23 H 1.48498 * 109.47049 * 90.35066 * 22 20 18 24 24 H 1.48495 * 109.46940 * 210.35311 * 22 20 18 25 25 H 1.48507 * 109.46827 * 330.35030 * 22 20 18 26 26 C 1.46843 * 119.23316 * 303.10545 * 17 16 15 27 27 C 1.53190 * 117.71384 * 215.09668 * 14 11 4 28 28 H 1.08996 * 109.47204 * 183.92966 * 1 2 3 29 29 H 1.09006 * 109.47366 * 303.92708 * 1 2 3 30 30 H 1.08995 * 109.47107 * 63.92416 * 1 2 3 31 31 H 1.09000 * 109.47276 * 151.66133 * 5 4 2 32 32 H 1.09006 * 109.47200 * 31.66503 * 5 4 2 33 33 H 1.07997 * 122.75383 * 179.97438 * 8 7 6 34 34 H 1.08003 * 126.04244 * 179.97438 * 9 8 7 35 35 H 1.08993 * 117.50479 * 359.97438 * 13 11 4 36 36 H 1.08993 * 117.50395 * 145.04472 * 13 11 4 37 37 H 1.09003 * 109.58321 * 278.67748 * 15 14 11 38 38 H 1.09003 * 109.58681 * 39.10095 * 15 14 11 39 39 H 1.09004 * 109.58076 * 291.50360 * 16 15 14 40 40 H 1.09000 * 109.58051 * 171.10523 * 16 15 14 41 41 H 0.97000 * 119.99925 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58009 * 297.10157 * 26 17 16 43 43 H 1.08998 * 109.58182 * 176.70275 * 26 17 16 44 44 H 1.09006 * 109.58529 * 320.90124 * 27 14 11 45 45 H 1.08996 * 109.58718 * 81.18733 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4529 -2.4334 -0.1125 6 6 1.0575 -2.9098 1.2614 7 7 -0.0476 -2.6116 1.8569 8 6 -0.2361 -3.1138 3.0606 9 6 0.7656 -3.8786 3.5051 10 16 2.0088 -3.9231 2.2572 11 6 3.6415 -1.1696 0.1140 12 1 4.0763 -2.0601 0.5678 13 6 4.3317 0.1695 0.3832 14 6 4.4366 -0.4823 -0.9953 15 6 3.6506 0.1554 -2.1451 16 6 4.5378 1.2034 -2.8278 17 7 5.8290 0.5877 -3.1590 18 6 6.2829 0.5828 -4.4510 19 1 5.5794 0.5783 -5.2705 20 6 7.6471 0.5838 -4.7073 21 7 8.0897 0.3092 -5.9161 22 14 8.8548 0.9746 -3.3369 23 1 9.2446 -0.2816 -2.6475 24 1 10.0629 1.6198 -3.9108 25 1 8.2168 1.8963 -2.3628 26 6 6.6282 -0.0224 -2.0887 27 6 5.7835 -1.0955 -1.3912 28 1 -0.3633 -1.0252 0.0704 29 1 -0.3634 0.5736 0.8527 30 1 -0.3633 0.4517 -0.9230 31 1 2.0919 -3.1789 -0.5857 32 1 0.5581 -2.2853 -0.7172 33 1 -1.1270 -2.9229 3.6404 34 1 0.8065 -4.3800 4.4608 35 1 3.6990 1.0522 0.4755 36 1 5.2207 0.1597 1.0136 37 1 3.3709 -0.6124 -2.8664 38 1 2.7539 0.6352 -1.7528 39 1 4.6965 2.0438 -2.1519 40 1 4.0546 1.5523 -3.7404 41 1 9.0430 0.3102 -6.0953 42 1 6.9163 0.7419 -1.3670 43 1 7.5209 -0.4801 -2.5150 44 1 6.3020 -1.4457 -0.4986 45 1 5.6186 -1.9321 -2.0700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072138548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:57 Heat of formation + Delta-G solvation = 101.406747 kcal Electronic energy + Delta-G solvation = -27571.377765 eV Core-core repulsion = 23912.074228 eV Total energy + Delta-G solvation = -3659.303537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.91588 -39.88959 -37.89514 -35.98464 -34.79971 -31.80911 -30.99509 -30.42532 -29.74250 -28.51890 -27.46572 -24.31594 -24.05263 -22.94690 -22.64660 -21.09150 -20.51952 -19.38227 -18.54306 -17.98240 -17.02896 -16.61317 -16.16909 -16.11008 -15.46868 -15.10050 -14.69664 -14.31030 -14.20073 -13.97472 -13.83382 -13.57337 -13.51273 -12.95228 -12.79638 -12.71158 -12.42491 -12.34349 -12.07050 -12.00951 -11.87217 -11.74378 -11.42471 -10.92755 -10.69411 -10.30594 -10.18040 -10.08047 -9.83002 -9.80536 -9.68080 -9.45050 -9.35831 -9.30159 -9.01152 -8.65932 -8.26502 -6.80074 -5.85058 -3.23981 0.25320 0.96266 1.36420 2.32793 2.48783 2.90628 3.35052 3.53215 3.56811 3.69280 4.08579 4.42136 4.59194 4.62302 4.72103 4.80761 4.98529 5.05514 5.08304 5.09858 5.16209 5.25951 5.34005 5.39565 5.44933 5.57591 5.63027 5.69231 5.85327 6.01523 6.12000 6.20433 6.24973 6.37189 6.50626 6.58097 6.60228 6.76462 6.82587 6.87432 6.91729 7.12227 7.23052 7.31042 8.09398 8.18419 8.42863 9.05468 9.81703 10.21779 11.31559 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.003140 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.819970 B = 8915.633560 C = 9508.105632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.519 3.481 3 O -0.518 6.518 4 N -0.575 5.575 5 C 0.188 3.812 6 C 0.024 3.976 7 N -0.463 5.463 8 C 0.038 3.962 9 C -0.260 4.260 10 S 0.142 5.858 11 C 0.052 3.948 12 H 0.117 0.883 13 C -0.191 4.191 14 C -0.096 4.096 15 C -0.105 4.105 16 C 0.157 3.843 17 N -0.607 5.607 18 C -0.253 4.253 19 H 0.084 0.916 20 C 0.017 3.983 21 N -0.919 5.919 22 Si 0.894 3.106 23 H -0.290 1.290 24 H -0.307 1.307 25 H -0.269 1.269 26 C 0.128 3.872 27 C -0.098 4.098 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.153 0.847 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.024 0.976 40 H 0.059 0.941 41 H 0.261 0.739 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.051 0.949 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 -10.493 19.618 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.310 3.690 3 O -0.396 6.396 4 N -0.307 5.307 5 C 0.061 3.939 6 C -0.255 4.255 7 N -0.178 5.178 8 C -0.114 4.114 9 C -0.399 4.399 10 S 0.395 5.605 11 C -0.051 4.051 12 H 0.134 0.866 13 C -0.228 4.228 14 C -0.097 4.097 15 C -0.143 4.143 16 C 0.031 3.969 17 N -0.331 5.331 18 C -0.382 4.382 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.563 5.563 22 Si 0.727 3.273 23 H -0.219 1.219 24 H -0.236 1.236 25 H -0.194 1.194 26 C 0.003 3.997 27 C -0.138 4.138 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.193 0.807 34 H 0.194 0.806 35 H 0.170 0.830 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.687 -10.053 19.093 27.278 hybrid contribution 0.052 -0.058 1.527 1.529 sum -16.635 -10.111 20.620 28.358 Atomic orbital electron populations 1.22072 0.91578 1.05524 1.04791 1.20896 0.90557 0.82814 0.74750 1.90430 1.68883 1.31618 1.48674 1.47252 1.05822 1.05072 1.72507 1.20106 0.98799 0.86747 0.88280 1.27734 0.93852 1.00982 1.02954 1.66244 1.19623 1.22957 1.09021 1.21819 1.00543 0.97092 0.91933 1.27174 0.98163 1.09083 1.05510 1.84196 1.22119 1.45275 1.08862 1.21992 0.77953 0.98589 1.06584 0.86570 1.24398 1.01692 0.97989 0.98727 1.21797 0.96613 1.00952 0.90382 1.21831 0.98309 0.98923 0.95281 1.20826 0.86047 0.92772 0.97237 1.44304 1.19512 1.64582 1.04706 1.18985 0.91521 1.45377 0.82318 0.89790 1.25326 0.97045 0.99767 0.95910 1.69772 1.13901 1.52296 1.20299 0.86839 0.80446 0.77987 0.82076 1.21861 1.23588 1.19421 1.21349 0.94274 0.93415 0.90702 1.21685 0.93539 0.99250 0.99279 0.89084 0.89001 0.88949 0.87427 0.86770 0.80677 0.80570 0.82968 0.90012 0.92717 0.90736 0.95805 0.92257 0.92898 0.95468 0.91185 0.93070 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 9.90 36.01 0.36 -1.35 16 2 C 0.52 6.68 6.44 -10.99 -0.07 6.61 16 3 O -0.52 -8.48 11.19 5.56 0.06 -8.42 16 4 N -0.58 -6.66 2.50 -167.57 -0.42 -7.08 16 5 C 0.19 1.59 5.61 -5.19 -0.03 1.56 16 6 C 0.02 0.21 6.86 -13.46 -0.09 0.11 16 7 N -0.46 -4.22 9.39 -11.87 -0.11 -4.33 16 8 C 0.04 0.28 11.35 -19.19 -0.22 0.06 16 9 C -0.26 -1.71 11.37 29.12 0.33 -1.38 16 10 S 0.14 1.07 23.18 -107.50 -2.49 -1.42 16 11 C 0.05 0.70 6.28 -68.01 -0.43 0.27 16 12 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.19 -3.03 9.16 -26.79 -0.25 -3.27 16 14 C -0.10 -1.60 1.94 -154.49 -0.30 -1.90 16 15 C -0.10 -1.92 5.39 -26.46 -0.14 -2.06 16 16 C 0.16 3.42 6.51 -3.68 -0.02 3.39 16 17 N -0.61 -15.19 2.73 -172.27 -0.47 -15.66 16 18 C -0.25 -7.34 10.06 -15.06 -0.15 -7.49 16 19 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.02 0.52 5.35 -17.43 -0.09 0.43 16 21 N -0.92 -28.93 13.97 55.49 0.78 -28.15 16 22 Si 0.89 23.37 24.26 -169.99 -4.12 19.24 16 23 H -0.29 -7.25 6.56 56.52 0.37 -6.88 16 24 H -0.31 -8.15 7.11 56.52 0.40 -7.74 16 25 H -0.27 -6.95 6.31 56.52 0.36 -6.60 16 26 C 0.13 2.92 4.15 -3.68 -0.02 2.91 16 27 C -0.10 -1.80 5.83 -26.45 -0.15 -1.95 16 28 H 0.09 0.76 4.43 -51.93 -0.23 0.53 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.11 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.11 0.80 6.37 -51.93 -0.33 0.47 16 33 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.15 2.69 4.64 -55.23 -0.26 2.44 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.32 4.20 -51.93 -0.22 1.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 43 H 0.07 1.73 3.85 -51.93 -0.20 1.53 16 44 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 357.48 15.07 5.39 5.39 Total: -1.00 -34.36 357.48 -8.96 -43.31 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.29 Total: 1.18 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.28 Total: -4.06 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.23 Total: -55.22 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.06 Total: -8.42 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.12 Total: 19.24 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.42 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.36 -8.96 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072138548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.722 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds