Wall clock time and date at job start Tue Mar 31 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99627 * 2 1 4 4 N 1.34772 * 120.00385 * 179.97438 * 2 1 3 5 5 C 1.46502 * 119.99731 * 5.13653 * 4 2 1 6 6 C 1.50697 * 109.47146 * 271.66457 * 5 4 2 7 7 N 1.29025 * 124.92151 * 89.95928 * 6 5 4 8 8 C 1.31776 * 117.12910 * 180.02562 * 7 6 5 9 9 C 1.33637 * 114.50200 * 359.97438 * 8 7 6 10 10 S 1.70978 * 124.91510 * 270.00032 * 6 5 4 11 11 C 1.46498 * 120.00345 * 185.13024 * 4 2 1 12 12 H 1.08996 * 115.55007 * 152.25515 * 11 4 2 13 13 C 1.53033 * 117.50026 * 6.57703 * 11 4 2 14 14 C 1.52808 * 117.50279 * 297.99140 * 11 4 2 15 15 C 1.53182 * 117.71756 * 359.85725 * 14 11 4 16 16 C 1.53344 * 108.77277 * 158.89279 * 15 14 11 17 17 N 1.46840 * 108.82050 * 51.30323 * 16 15 14 18 18 C 1.36942 * 120.38148 * 123.11842 * 17 16 15 19 19 H 1.07997 * 120.00408 * 330.90006 * 18 17 16 20 20 C 1.38813 * 119.99451 * 150.89084 * 18 17 16 21 21 N 1.31619 * 119.99618 * 166.29816 * 20 18 17 22 22 Si 1.86800 * 120.00426 * 346.30695 * 20 18 17 23 23 H 1.48498 * 109.47049 * 90.35066 * 22 20 18 24 24 H 1.48495 * 109.46940 * 210.35311 * 22 20 18 25 25 H 1.48507 * 109.46827 * 330.35030 * 22 20 18 26 26 C 1.46843 * 119.23316 * 303.10545 * 17 16 15 27 27 C 1.53190 * 117.71384 * 215.09668 * 14 11 4 28 28 H 1.08996 * 109.47204 * 183.92966 * 1 2 3 29 29 H 1.09006 * 109.47366 * 303.92708 * 1 2 3 30 30 H 1.08995 * 109.47107 * 63.92416 * 1 2 3 31 31 H 1.09000 * 109.47276 * 151.66133 * 5 4 2 32 32 H 1.09006 * 109.47200 * 31.66503 * 5 4 2 33 33 H 1.07997 * 122.75383 * 179.97438 * 8 7 6 34 34 H 1.08003 * 126.04244 * 179.97438 * 9 8 7 35 35 H 1.08993 * 117.50479 * 359.97438 * 13 11 4 36 36 H 1.08993 * 117.50395 * 145.04472 * 13 11 4 37 37 H 1.09003 * 109.58321 * 278.67748 * 15 14 11 38 38 H 1.09003 * 109.58681 * 39.10095 * 15 14 11 39 39 H 1.09004 * 109.58076 * 291.50360 * 16 15 14 40 40 H 1.09000 * 109.58051 * 171.10523 * 16 15 14 41 41 H 0.97000 * 119.99925 * 179.97438 * 21 20 18 42 42 H 1.08997 * 109.58009 * 297.10157 * 26 17 16 43 43 H 1.08998 * 109.58182 * 176.70275 * 26 17 16 44 44 H 1.09006 * 109.58529 * 320.90124 * 27 14 11 45 45 H 1.08996 * 109.58718 * 81.18733 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.4529 -2.4334 -0.1125 6 6 1.0575 -2.9098 1.2614 7 7 -0.0476 -2.6116 1.8569 8 6 -0.2361 -3.1138 3.0606 9 6 0.7656 -3.8786 3.5051 10 16 2.0088 -3.9231 2.2572 11 6 3.6415 -1.1696 0.1140 12 1 4.0763 -2.0601 0.5678 13 6 4.3317 0.1695 0.3832 14 6 4.4366 -0.4823 -0.9953 15 6 3.6506 0.1554 -2.1451 16 6 4.5378 1.2034 -2.8278 17 7 5.8290 0.5877 -3.1590 18 6 6.2829 0.5828 -4.4510 19 1 5.5794 0.5783 -5.2705 20 6 7.6471 0.5838 -4.7073 21 7 8.0897 0.3092 -5.9161 22 14 8.8548 0.9746 -3.3369 23 1 9.2446 -0.2816 -2.6475 24 1 10.0629 1.6198 -3.9108 25 1 8.2168 1.8963 -2.3628 26 6 6.6282 -0.0224 -2.0887 27 6 5.7835 -1.0955 -1.3912 28 1 -0.3633 -1.0252 0.0704 29 1 -0.3634 0.5736 0.8527 30 1 -0.3633 0.4517 -0.9230 31 1 2.0919 -3.1789 -0.5857 32 1 0.5581 -2.2853 -0.7172 33 1 -1.1270 -2.9229 3.6404 34 1 0.8065 -4.3800 4.4608 35 1 3.6990 1.0522 0.4755 36 1 5.2207 0.1597 1.0136 37 1 3.3709 -0.6124 -2.8664 38 1 2.7539 0.6352 -1.7528 39 1 4.6965 2.0438 -2.1519 40 1 4.0546 1.5523 -3.7404 41 1 9.0430 0.3102 -6.0953 42 1 6.9163 0.7419 -1.3670 43 1 7.5209 -0.4801 -2.5150 44 1 6.3020 -1.4457 -0.4986 45 1 5.6186 -1.9321 -2.0700 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072138548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:56 Heat of formation + Delta-G solvation = 79.172802 kcal Electronic energy + Delta-G solvation = -27572.341901 eV Core-core repulsion = 23912.074228 eV Total energy + Delta-G solvation = -3660.267673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94670 -40.51697 -39.32162 -37.21840 -36.11027 -33.88188 -32.09513 -31.66446 -30.92534 -29.81593 -28.23473 -26.03533 -24.92755 -24.47311 -23.79827 -22.86884 -21.13737 -20.43636 -19.66588 -19.04119 -18.39561 -17.88852 -17.54192 -16.91009 -16.85883 -16.23450 -15.93888 -15.56327 -15.38335 -15.05582 -14.97507 -14.82197 -14.59839 -14.32078 -14.22010 -13.99921 -13.83442 -13.58008 -13.38757 -13.31001 -12.95788 -12.70639 -12.61578 -12.37424 -12.21772 -12.13392 -11.88439 -11.57848 -11.44374 -11.27414 -10.79350 -10.69669 -10.61887 -10.34131 -10.13386 -9.87735 -9.49700 -8.82494 -8.15631 -5.51685 -0.29317 0.43867 0.83606 1.25971 1.39887 1.49270 1.51188 1.68639 2.12853 2.39975 2.86293 3.11124 3.17121 3.32529 3.56082 3.87054 3.88904 3.98381 4.04492 4.07373 4.17984 4.38869 4.41815 4.42394 4.49713 4.57061 4.59158 4.61659 4.67448 4.69182 4.74721 4.88237 4.95403 5.01732 5.06510 5.12689 5.19675 5.24296 5.26578 5.42193 5.51077 5.77776 5.88189 6.12825 6.31193 6.76243 6.92623 7.19986 7.62250 8.04226 9.04670 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.021754 B = 0.003140 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.819970 B = 8915.633560 C = 9508.105632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.512 3.488 3 O -0.558 6.558 4 N -0.575 5.575 5 C 0.184 3.816 6 C 0.008 3.992 7 N -0.478 5.478 8 C 0.020 3.980 9 C -0.251 4.251 10 S 0.147 5.853 11 C 0.088 3.912 12 H 0.145 0.855 13 C -0.198 4.198 14 C -0.119 4.119 15 C -0.089 4.089 16 C 0.154 3.846 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.049 0.951 20 C -0.039 4.039 21 N -0.964 5.964 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.313 1.313 25 H -0.266 1.266 26 C 0.121 3.879 27 C -0.087 4.087 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.083 0.917 39 H 0.020 0.980 40 H 0.046 0.954 41 H 0.262 0.738 42 H 0.029 0.971 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.719 -12.295 22.883 32.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.304 3.696 3 O -0.439 6.439 4 N -0.305 5.305 5 C 0.058 3.942 6 C -0.270 4.270 7 N -0.194 5.194 8 C -0.131 4.131 9 C -0.391 4.391 10 S 0.400 5.600 11 C -0.017 4.017 12 H 0.162 0.838 13 C -0.235 4.235 14 C -0.121 4.121 15 C -0.128 4.128 16 C 0.029 3.971 17 N -0.344 5.344 18 C -0.376 4.376 19 H 0.067 0.933 20 C -0.233 4.233 21 N -0.611 5.611 22 Si 0.789 3.211 23 H -0.195 1.195 24 H -0.242 1.242 25 H -0.191 1.191 26 C -0.003 4.003 27 C -0.126 4.126 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.212 0.788 34 H 0.218 0.782 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.103 0.897 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.730 -11.895 22.400 30.945 hybrid contribution 0.222 0.489 0.530 0.755 sum -17.508 -11.406 22.930 31.023 Atomic orbital electron populations 1.22046 0.89078 1.06543 1.05342 1.21500 0.91830 0.82507 0.73774 1.90424 1.69856 1.33079 1.50536 1.47348 1.05228 1.06127 1.71761 1.20345 0.99421 0.85542 0.88902 1.27637 0.94305 1.01962 1.03129 1.66235 1.20004 1.23378 1.09798 1.22188 1.01654 0.97466 0.91796 1.27521 0.97265 1.08248 1.06029 1.84153 1.22151 1.44768 1.08942 1.21965 0.78886 0.98279 1.02551 0.83813 1.24330 1.02407 0.98965 0.97784 1.21628 0.96760 1.03287 0.90442 1.21607 0.97990 0.97599 0.95570 1.20914 0.85421 0.93817 0.96936 1.44412 1.20637 1.65557 1.03830 1.18901 0.91119 1.44064 0.83518 0.93346 1.25978 0.98847 1.00243 0.98267 1.69909 1.14265 1.54328 1.22567 0.85779 0.77634 0.78440 0.79216 1.19519 1.24239 1.19066 1.21410 0.94267 0.94589 0.90059 1.21516 0.93804 0.97318 0.99964 0.87733 0.88784 0.88016 0.85818 0.85410 0.78838 0.78161 0.84630 0.88983 0.93503 0.89859 0.96213 0.93563 0.92933 0.95330 0.93046 0.89734 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.90 71.24 0.71 -2.19 16 2 C 0.51 12.27 6.44 87.66 0.56 12.83 16 3 O -0.56 -17.80 11.19 -3.03 -0.03 -17.84 16 4 N -0.57 -11.81 2.50 -802.45 -2.00 -13.81 16 5 C 0.18 2.56 5.61 85.63 0.48 3.04 16 6 C 0.01 0.12 6.86 88.52 0.61 0.72 16 7 N -0.48 -7.42 9.39 -191.46 -1.80 -9.22 16 8 C 0.02 0.24 11.35 83.66 0.95 1.19 16 9 C -0.25 -2.49 11.37 66.78 0.76 -1.73 16 10 S 0.15 1.75 23.18 -56.49 -1.31 0.44 16 11 C 0.09 2.07 6.28 44.94 0.28 2.35 16 12 H 0.14 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.20 -5.83 9.16 30.55 0.28 -5.56 16 14 C -0.12 -3.77 1.94 -52.17 -0.10 -3.87 16 15 C -0.09 -3.22 5.39 30.77 0.17 -3.06 16 16 C 0.15 6.83 6.51 86.43 0.56 7.39 16 17 N -0.62 -31.33 2.73 -698.93 -1.91 -33.24 16 18 C -0.25 -14.74 10.06 84.03 0.85 -13.89 16 19 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 20 C -0.04 -2.40 5.35 84.86 0.45 -1.94 16 21 N -0.96 -62.52 13.97 21.65 0.30 -62.22 16 22 Si 0.96 48.89 24.26 68.60 1.66 50.55 16 23 H -0.27 -12.63 6.56 99.48 0.65 -11.97 16 24 H -0.31 -16.13 7.11 99.48 0.71 -15.42 16 25 H -0.27 -13.24 6.31 99.48 0.63 -12.61 16 26 C 0.12 5.39 4.15 86.43 0.36 5.75 16 27 C -0.09 -2.98 5.83 30.77 0.18 -2.80 16 28 H 0.10 1.47 4.43 -2.39 -0.01 1.46 16 29 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.33 8.06 -2.39 -0.02 1.31 16 32 H 0.13 1.42 6.37 -2.38 -0.02 1.41 16 33 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.14 4.66 4.64 -54.54 -0.25 4.41 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 2.90 4.20 -2.39 -0.01 2.89 16 39 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 41 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.03 1.27 7.04 -2.39 -0.02 1.25 16 43 H 0.05 2.47 3.85 -2.39 -0.01 2.46 16 44 H 0.08 2.34 8.10 -2.38 -0.02 2.33 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -76.54 357.48 2.64 -73.90 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.64 Total: 13.19 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 7.09 Total: -1.75 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -5.41 Total: -118.49 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.03 Total: -17.84 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.66 Total: 50.55 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.31 Total: 0.44 kcal Total: -76.54 2.64 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072138548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.069 kcal (2) G-P(sol) polarization free energy of solvation -76.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds