Wall clock time and date at job start Tue Mar 31 2020 18:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21275 * 119.99981 * 2 1 4 4 N 1.34774 * 119.99534 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99510 * 175.03729 * 4 2 1 6 6 C 1.50703 * 109.47143 * 89.99816 * 5 4 2 7 7 N 1.29028 * 124.91696 * 90.03826 * 6 5 4 8 8 C 1.31782 * 117.12914 * 179.67622 * 7 6 5 9 9 C 1.33643 * 114.49478 * 0.52840 * 8 7 6 10 10 S 1.70973 * 124.91967 * 270.00080 * 6 5 4 11 11 C 1.46501 * 120.00690 * 355.03250 * 4 2 1 12 12 H 1.08998 * 115.54785 * 80.82174 * 11 4 2 13 13 C 1.53024 * 117.50721 * 226.50635 * 11 4 2 14 14 C 1.52811 * 117.50244 * 295.13943 * 11 4 2 15 15 C 1.53181 * 117.71240 * 144.89526 * 14 11 4 16 16 C 1.53353 * 108.77043 * 158.89024 * 15 14 11 17 17 N 1.46832 * 108.81814 * 51.30499 * 16 15 14 18 18 C 1.36937 * 120.38600 * 123.07997 * 17 16 15 19 19 H 1.07994 * 120.00394 * 206.40420 * 18 17 16 20 20 C 1.38815 * 119.99863 * 26.40214 * 18 17 16 21 21 N 1.31615 * 120.00452 * 215.48154 * 20 18 17 22 22 Si 1.86801 * 119.99758 * 35.48311 * 20 18 17 23 23 H 1.48500 * 109.47178 * 95.37696 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.37220 * 22 20 18 25 25 H 1.48499 * 109.47253 * 335.36997 * 22 20 18 26 26 C 1.46846 * 119.23507 * 303.10313 * 17 16 15 27 27 C 1.53182 * 117.71709 * 0.13591 * 14 11 4 28 28 H 1.08996 * 109.47109 * 182.72240 * 1 2 3 29 29 H 1.09004 * 109.46960 * 302.72171 * 1 2 3 30 30 H 1.09003 * 109.46916 * 62.72450 * 1 2 3 31 31 H 1.09001 * 109.47203 * 330.00193 * 5 4 2 32 32 H 1.08995 * 109.47121 * 209.99737 * 5 4 2 33 33 H 1.08002 * 122.75331 * 180.33334 * 8 7 6 34 34 H 1.07997 * 126.03721 * 179.78604 * 9 8 7 35 35 H 1.08995 * 117.50641 * 214.95920 * 13 11 4 36 36 H 1.09003 * 117.50000 * 0.02562 * 13 11 4 37 37 H 1.09004 * 109.59034 * 278.67033 * 15 14 11 38 38 H 1.08999 * 109.58950 * 39.10061 * 15 14 11 39 39 H 1.09006 * 109.57898 * 291.50711 * 16 15 14 40 40 H 1.09004 * 109.69369 * 171.17524 * 16 15 14 41 41 H 0.96998 * 120.00750 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.58247 * 297.10783 * 26 17 16 43 43 H 1.09004 * 109.69727 * 176.76771 * 26 17 16 44 44 H 1.08997 * 109.58687 * 320.90684 * 27 14 11 45 45 H 1.09005 * 109.58597 * 81.33097 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6418 -1.1696 -0.1103 6 6 4.2492 -1.1095 1.2676 7 7 4.5492 -2.1371 1.9879 8 6 5.0811 -1.9068 3.1714 9 6 5.2282 -0.6125 3.4704 10 16 4.6413 0.3301 2.1024 11 6 1.4525 -2.4337 0.1088 12 1 1.0104 -2.8030 -0.8165 13 6 1.9825 -3.4703 1.1018 14 6 0.6960 -2.7027 1.4089 15 6 -0.6277 -3.4682 1.3175 16 6 -0.9393 -4.0803 2.6886 17 7 -0.8418 -3.0296 3.7096 18 6 -1.9081 -2.7532 4.5231 19 1 -2.0190 -1.7684 4.9522 20 6 -2.8467 -3.7388 4.7961 21 7 -4.1165 -3.4196 4.9302 22 14 -2.3074 -5.5185 4.9733 23 1 -2.0956 -5.8309 6.4096 24 1 -3.3584 -6.4114 4.4224 25 1 -1.0397 -5.7281 4.2288 26 6 0.4122 -2.2782 3.8480 27 6 0.7512 -1.6294 2.5005 28 1 -0.3633 -1.0265 0.0488 29 1 -0.3633 0.5555 0.8646 30 1 -0.3633 0.4710 -0.9134 31 1 3.9642 -0.3029 -0.6875 32 1 3.9670 -2.0813 -0.6113 33 1 5.3712 -2.6989 3.8458 34 1 5.6387 -0.2148 4.3867 35 1 1.8887 -4.5217 0.8300 36 1 2.8729 -3.2099 1.6741 37 1 -1.4268 -2.7838 1.0328 38 1 -0.5408 -4.2610 0.5746 39 1 -0.2210 -4.8704 2.9078 40 1 -1.9478 -4.4942 2.6855 41 1 -4.7723 -4.1082 5.1214 42 1 1.2143 -2.9565 4.1388 43 1 0.2951 -1.5045 4.6068 44 1 1.7530 -1.2020 2.5423 45 1 0.0263 -0.8459 2.2795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072138549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:01 Heat of formation + Delta-G solvation = 82.830491 kcal Electronic energy + Delta-G solvation = -28373.032068 eV Core-core repulsion = 24712.923004 eV Total energy + Delta-G solvation = -3660.109063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69713 -39.45745 -38.41724 -36.02498 -34.04026 -31.87342 -31.44327 -30.43572 -29.74936 -28.67140 -27.00393 -24.22862 -23.95886 -22.90677 -22.53988 -21.27575 -20.27302 -19.07733 -18.39710 -18.01254 -16.83782 -16.63378 -16.22336 -15.96593 -15.29513 -14.92637 -14.55235 -14.40045 -14.00673 -13.95975 -13.76694 -13.59444 -13.53321 -12.97617 -12.81646 -12.41499 -12.36430 -12.12331 -11.99704 -11.94934 -11.70644 -11.66511 -11.43725 -10.75583 -10.67366 -10.63428 -10.19565 -10.04662 -9.95916 -9.87329 -9.71779 -9.49139 -9.37213 -9.33422 -8.97386 -8.72447 -8.40075 -6.97684 -6.03459 -3.22725 0.55903 1.30060 1.71965 2.49903 2.63395 3.07559 3.38944 3.51413 3.56651 3.77498 3.99497 4.51268 4.57287 4.84656 4.89273 4.93226 5.02563 5.05673 5.12896 5.16867 5.30298 5.33857 5.40667 5.43329 5.46022 5.54557 5.78453 5.88160 5.95081 5.98555 6.01478 6.10595 6.23409 6.26290 6.36634 6.40429 6.44862 6.54734 6.66318 6.73231 6.78544 7.01202 7.28961 7.61102 7.96677 8.10157 8.30605 8.97197 9.74309 10.15048 11.11351 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.004215 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.000170 B = 6641.119056 C = 7269.488647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.524 3.476 3 O -0.547 6.547 4 N -0.579 5.579 5 C 0.194 3.806 6 C 0.024 3.976 7 N -0.461 5.461 8 C 0.037 3.963 9 C -0.267 4.267 10 S 0.161 5.839 11 C 0.049 3.951 12 H 0.116 0.884 13 C -0.175 4.175 14 C -0.092 4.092 15 C -0.103 4.103 16 C 0.151 3.849 17 N -0.598 5.598 18 C -0.270 4.270 19 H 0.080 0.920 20 C 0.038 3.962 21 N -0.885 5.885 22 Si 0.834 3.166 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.254 1.254 26 C 0.154 3.846 27 C -0.098 4.098 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.174 0.826 34 H 0.175 0.825 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.262 0.738 42 H 0.019 0.981 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.252 3.843 -10.968 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.315 3.685 3 O -0.425 6.425 4 N -0.312 5.312 5 C 0.068 3.932 6 C -0.254 4.254 7 N -0.177 5.177 8 C -0.114 4.114 9 C -0.407 4.407 10 S 0.414 5.586 11 C -0.055 4.055 12 H 0.134 0.866 13 C -0.213 4.213 14 C -0.093 4.093 15 C -0.142 4.142 16 C 0.025 3.975 17 N -0.320 5.320 18 C -0.398 4.398 19 H 0.097 0.903 20 C -0.163 4.163 21 N -0.525 5.525 22 Si 0.661 3.339 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.179 1.179 26 C 0.028 3.972 27 C -0.137 4.137 28 H 0.109 0.891 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.191 0.809 34 H 0.192 0.808 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.185 4.930 -11.385 21.195 hybrid contribution 0.440 -1.956 1.056 2.266 sum 17.625 2.974 -10.328 20.643 Atomic orbital electron populations 1.22053 0.91086 1.05734 1.04740 1.20930 0.91026 0.82445 0.74136 1.90683 1.70842 1.30858 1.50084 1.47446 1.04796 1.06012 1.72902 1.19862 0.80003 1.04894 0.88467 1.27540 1.03640 0.91624 1.02628 1.66141 1.13329 1.32615 1.05584 1.21786 1.00297 0.95775 0.93542 1.27234 1.11004 0.97387 1.05082 1.84401 1.54107 1.11816 1.08232 1.22026 1.02178 0.86229 0.95099 0.86613 1.23833 0.99960 0.96180 1.01297 1.21843 0.93628 0.99740 0.94127 1.21805 0.94140 0.98506 0.99774 1.21275 0.99435 0.90436 0.86367 1.44252 1.10667 1.40770 1.36345 1.18789 0.98968 0.96459 1.25548 0.90265 1.25191 0.94831 0.97326 0.98972 1.70089 1.00110 1.33946 1.48379 0.87642 0.79655 0.88015 0.78561 1.22258 1.22201 1.17859 1.20822 0.88141 0.94528 0.93706 1.21691 0.99840 0.96298 0.95842 0.89105 0.88536 0.89187 0.87937 0.87516 0.80871 0.80754 0.88587 0.85354 0.91164 0.92594 0.95420 0.91563 0.92860 0.96295 0.92243 0.93393 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.41 36.01 0.30 -1.84 16 2 C 0.52 7.10 6.78 -10.98 -0.07 7.02 16 3 O -0.55 -8.68 16.73 5.56 0.09 -8.59 16 4 N -0.58 -6.99 2.17 -167.56 -0.36 -7.35 16 5 C 0.19 2.12 5.66 -5.19 -0.03 2.09 16 6 C 0.02 0.29 6.12 -13.45 -0.08 0.21 16 7 N -0.46 -5.79 7.86 -11.86 -0.09 -5.89 16 8 C 0.04 0.42 11.35 -19.18 -0.22 0.20 16 9 C -0.27 -2.76 11.37 29.12 0.33 -2.43 16 10 S 0.16 1.86 23.18 -107.50 -2.49 -0.63 16 11 C 0.05 0.58 4.61 -68.02 -0.31 0.27 16 12 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.18 -2.33 9.39 -26.75 -0.25 -2.58 16 14 C -0.09 -1.35 0.80 -154.45 -0.12 -1.48 16 15 C -0.10 -1.67 5.69 -26.46 -0.15 -1.82 16 16 C 0.15 3.14 4.36 -3.68 -0.02 3.13 16 17 N -0.60 -13.76 2.69 -172.26 -0.46 -14.23 16 18 C -0.27 -7.36 9.84 -15.06 -0.15 -7.51 16 19 H 0.08 2.32 8.05 -52.49 -0.42 1.90 16 20 C 0.04 1.06 4.86 -17.43 -0.08 0.97 16 21 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 22 Si 0.83 20.91 26.35 -169.99 -4.48 16.43 16 23 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 24 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 25 H -0.25 -6.01 4.84 56.52 0.27 -5.74 16 26 C 0.15 3.07 6.51 -3.67 -0.02 3.04 16 27 C -0.10 -1.62 4.29 -26.46 -0.11 -1.74 16 28 H 0.09 1.10 4.89 -51.93 -0.25 0.85 16 29 H 0.10 1.24 7.39 -51.93 -0.38 0.86 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.06 7.50 -51.93 -0.39 0.68 16 32 H 0.11 1.00 8.07 -51.93 -0.42 0.58 16 33 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 35 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.13 1.83 4.65 -51.93 -0.24 1.59 16 37 H 0.07 1.19 7.78 -51.93 -0.40 0.78 16 38 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.03 0.59 6.80 -51.93 -0.35 0.23 16 40 H 0.07 1.51 5.34 -51.93 -0.28 1.23 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.21 7.92 -51.93 -0.41 0.80 16 44 H 0.05 0.79 7.20 -51.93 -0.37 0.42 16 45 H 0.07 1.18 5.97 -51.93 -0.31 0.87 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -31.59 358.69 -9.07 -40.67 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.46 Total: 2.29 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.00 Total: -2.47 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.14 Total: -53.10 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.48 Total: 16.43 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.49 Total: -0.63 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.59 -9.07 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072138549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.497 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds