Wall clock time and date at job start Tue Mar 31 2020 18:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21275 * 119.99981 * 2 1 4 4 N 1.34774 * 119.99534 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99510 * 175.03729 * 4 2 1 6 6 C 1.50703 * 109.47143 * 89.99816 * 5 4 2 7 7 N 1.29028 * 124.91696 * 90.03826 * 6 5 4 8 8 C 1.31782 * 117.12914 * 179.67622 * 7 6 5 9 9 C 1.33643 * 114.49478 * 0.52840 * 8 7 6 10 10 S 1.70973 * 124.91967 * 270.00080 * 6 5 4 11 11 C 1.46501 * 120.00690 * 355.03250 * 4 2 1 12 12 H 1.08998 * 115.54785 * 80.82174 * 11 4 2 13 13 C 1.53024 * 117.50721 * 226.50635 * 11 4 2 14 14 C 1.52811 * 117.50244 * 295.13943 * 11 4 2 15 15 C 1.53181 * 117.71240 * 144.89526 * 14 11 4 16 16 C 1.53353 * 108.77043 * 158.89024 * 15 14 11 17 17 N 1.46832 * 108.81814 * 51.30499 * 16 15 14 18 18 C 1.36937 * 120.38600 * 123.07997 * 17 16 15 19 19 H 1.07994 * 120.00394 * 206.40420 * 18 17 16 20 20 C 1.38815 * 119.99863 * 26.40214 * 18 17 16 21 21 N 1.31615 * 120.00452 * 215.48154 * 20 18 17 22 22 Si 1.86801 * 119.99758 * 35.48311 * 20 18 17 23 23 H 1.48500 * 109.47178 * 95.37696 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.37220 * 22 20 18 25 25 H 1.48499 * 109.47253 * 335.36997 * 22 20 18 26 26 C 1.46846 * 119.23507 * 303.10313 * 17 16 15 27 27 C 1.53182 * 117.71709 * 0.13591 * 14 11 4 28 28 H 1.08996 * 109.47109 * 182.72240 * 1 2 3 29 29 H 1.09004 * 109.46960 * 302.72171 * 1 2 3 30 30 H 1.09003 * 109.46916 * 62.72450 * 1 2 3 31 31 H 1.09001 * 109.47203 * 330.00193 * 5 4 2 32 32 H 1.08995 * 109.47121 * 209.99737 * 5 4 2 33 33 H 1.08002 * 122.75331 * 180.33334 * 8 7 6 34 34 H 1.07997 * 126.03721 * 179.78604 * 9 8 7 35 35 H 1.08995 * 117.50641 * 214.95920 * 13 11 4 36 36 H 1.09003 * 117.50000 * 0.02562 * 13 11 4 37 37 H 1.09004 * 109.59034 * 278.67033 * 15 14 11 38 38 H 1.08999 * 109.58950 * 39.10061 * 15 14 11 39 39 H 1.09006 * 109.57898 * 291.50711 * 16 15 14 40 40 H 1.09004 * 109.69369 * 171.17524 * 16 15 14 41 41 H 0.96998 * 120.00750 * 180.02562 * 21 20 18 42 42 H 1.08995 * 109.58247 * 297.10783 * 26 17 16 43 43 H 1.09004 * 109.69727 * 176.76771 * 26 17 16 44 44 H 1.08997 * 109.58687 * 320.90684 * 27 14 11 45 45 H 1.09005 * 109.58597 * 81.33097 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6418 -1.1696 -0.1103 6 6 4.2492 -1.1095 1.2676 7 7 4.5492 -2.1371 1.9879 8 6 5.0811 -1.9068 3.1714 9 6 5.2282 -0.6125 3.4704 10 16 4.6413 0.3301 2.1024 11 6 1.4525 -2.4337 0.1088 12 1 1.0104 -2.8030 -0.8165 13 6 1.9825 -3.4703 1.1018 14 6 0.6960 -2.7027 1.4089 15 6 -0.6277 -3.4682 1.3175 16 6 -0.9393 -4.0803 2.6886 17 7 -0.8418 -3.0296 3.7096 18 6 -1.9081 -2.7532 4.5231 19 1 -2.0190 -1.7684 4.9522 20 6 -2.8467 -3.7388 4.7961 21 7 -4.1165 -3.4196 4.9302 22 14 -2.3074 -5.5185 4.9733 23 1 -2.0956 -5.8309 6.4096 24 1 -3.3584 -6.4114 4.4224 25 1 -1.0397 -5.7281 4.2288 26 6 0.4122 -2.2782 3.8480 27 6 0.7512 -1.6294 2.5005 28 1 -0.3633 -1.0265 0.0488 29 1 -0.3633 0.5555 0.8646 30 1 -0.3633 0.4710 -0.9134 31 1 3.9642 -0.3029 -0.6875 32 1 3.9670 -2.0813 -0.6113 33 1 5.3712 -2.6989 3.8458 34 1 5.6387 -0.2148 4.3867 35 1 1.8887 -4.5217 0.8300 36 1 2.8729 -3.2099 1.6741 37 1 -1.4268 -2.7838 1.0328 38 1 -0.5408 -4.2610 0.5746 39 1 -0.2210 -4.8704 2.9078 40 1 -1.9478 -4.4942 2.6855 41 1 -4.7723 -4.1082 5.1214 42 1 1.2143 -2.9565 4.1388 43 1 0.2951 -1.5045 4.6068 44 1 1.7530 -1.2020 2.5423 45 1 0.0263 -0.8459 2.2795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072138549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:00 Heat of formation + Delta-G solvation = 64.242925 kcal Electronic energy + Delta-G solvation = -28373.838085 eV Core-core repulsion = 24712.923004 eV Total energy + Delta-G solvation = -3660.915081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73505 -40.36454 -39.67018 -37.47269 -35.29531 -33.77151 -32.45195 -31.91601 -30.81422 -30.08353 -27.93095 -26.02325 -24.85311 -24.40338 -23.56282 -22.87350 -21.24693 -20.15796 -19.62617 -19.05583 -18.37064 -17.85379 -17.29450 -17.08549 -16.71724 -16.16326 -16.05182 -15.50679 -15.36280 -15.15920 -15.01751 -14.83703 -14.46969 -14.41025 -14.20149 -14.06037 -13.82122 -13.33175 -13.29303 -13.04681 -12.96399 -12.68645 -12.59239 -12.33006 -12.27415 -12.10903 -12.02131 -11.45176 -11.28051 -11.17417 -11.08782 -10.68053 -10.65120 -10.47445 -10.26745 -9.86501 -9.72127 -8.89136 -8.19866 -5.35504 -0.29837 0.45233 0.87112 1.36697 1.47576 1.50421 1.54774 1.70267 2.15238 2.47406 2.69669 2.97775 3.16028 3.43418 3.54752 3.83043 3.86856 4.00178 4.04985 4.08399 4.27414 4.38338 4.40981 4.48649 4.52654 4.57364 4.59313 4.63257 4.69480 4.73171 4.89776 4.97183 4.98170 5.01069 5.06656 5.13354 5.18859 5.24845 5.28103 5.35658 5.52115 5.57474 5.90350 6.13429 6.29298 6.73887 6.97463 7.08021 7.69809 8.11273 8.98658 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.004215 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.000170 B = 6641.119056 C = 7269.488647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.522 3.478 3 O -0.574 6.574 4 N -0.576 5.576 5 C 0.192 3.808 6 C 0.016 3.984 7 N -0.471 5.471 8 C 0.021 3.979 9 C -0.258 4.258 10 S 0.136 5.864 11 C 0.076 3.924 12 H 0.148 0.852 13 C -0.168 4.168 14 C -0.113 4.113 15 C -0.090 4.090 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.043 0.957 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.899 3.101 23 H -0.307 1.307 24 H -0.296 1.296 25 H -0.229 1.229 26 C 0.154 3.846 27 C -0.080 4.080 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.128 0.872 33 H 0.192 0.808 34 H 0.198 0.802 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.060 0.940 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.261 0.739 42 H 0.024 0.976 43 H 0.042 0.958 44 H 0.049 0.951 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.294 2.276 -12.959 23.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.312 3.688 3 O -0.454 6.454 4 N -0.308 5.308 5 C 0.066 3.934 6 C -0.262 4.262 7 N -0.187 5.187 8 C -0.130 4.130 9 C -0.398 4.398 10 S 0.389 5.611 11 C -0.027 4.027 12 H 0.165 0.835 13 C -0.206 4.206 14 C -0.114 4.114 15 C -0.129 4.129 16 C 0.019 3.981 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.060 0.940 20 C -0.211 4.211 21 N -0.577 5.577 22 Si 0.726 3.274 23 H -0.235 1.235 24 H -0.223 1.223 25 H -0.153 1.153 26 C 0.028 3.972 27 C -0.119 4.119 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.209 0.791 34 H 0.215 0.785 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.281 3.335 -13.400 23.715 hybrid contribution -0.132 -1.363 1.732 2.208 sum 19.149 1.972 -11.668 22.510 Atomic orbital electron populations 1.22048 0.90294 1.05855 1.05180 1.21135 0.91458 0.82452 0.73706 1.90676 1.71395 1.31871 1.51422 1.47475 1.05437 1.05708 1.72177 1.20039 0.79036 1.06146 0.88160 1.27699 1.04025 0.91414 1.03049 1.66149 1.13597 1.32838 1.06099 1.22152 1.00555 0.96636 0.93640 1.27514 1.10050 0.96932 1.05280 1.84519 1.54599 1.12610 1.09322 1.22142 1.00141 0.85533 0.94901 0.83524 1.23874 0.98219 0.97295 1.01185 1.21615 0.93918 1.00209 0.95692 1.21612 0.94606 0.99251 0.97477 1.21336 0.98302 0.90148 0.88280 1.44335 1.10644 1.41656 1.36558 1.18697 0.99924 0.94970 1.25393 0.93962 1.25687 0.94610 1.01055 0.99706 1.70174 1.01232 1.35180 1.51130 0.86626 0.80125 0.82921 0.77733 1.23542 1.22261 1.15253 1.20880 0.86879 0.93970 0.95431 1.21409 0.99318 0.96448 0.94736 0.88873 0.89836 0.87261 0.87611 0.85429 0.79125 0.78464 0.86844 0.86161 0.92120 0.88991 0.94853 0.93844 0.92975 0.95816 0.93946 0.93211 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.41 71.24 0.60 -3.34 16 2 C 0.52 13.15 6.78 87.66 0.59 13.74 16 3 O -0.57 -17.61 16.73 -3.01 -0.05 -17.66 16 4 N -0.58 -12.24 2.17 -802.44 -1.74 -13.99 16 5 C 0.19 3.69 5.66 85.63 0.48 4.17 16 6 C 0.02 0.36 6.12 88.52 0.54 0.90 16 7 N -0.47 -10.75 7.86 -191.44 -1.51 -12.26 16 8 C 0.02 0.42 11.35 83.66 0.95 1.37 16 9 C -0.26 -4.89 11.37 66.78 0.76 -4.13 16 10 S 0.14 3.01 23.18 -56.49 -1.31 1.70 16 11 C 0.08 1.51 4.61 44.94 0.21 1.72 16 12 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.17 -3.76 9.39 30.58 0.29 -3.48 16 14 C -0.11 -2.98 0.80 -52.15 -0.04 -3.02 16 15 C -0.09 -2.66 5.69 30.77 0.18 -2.49 16 16 C 0.14 5.72 4.36 86.43 0.38 6.10 16 17 N -0.61 -27.86 2.69 -698.91 -1.88 -29.74 16 18 C -0.26 -14.58 9.84 84.03 0.83 -13.76 16 19 H 0.04 2.62 8.05 -2.91 -0.02 2.60 16 20 C -0.01 -0.76 4.86 84.86 0.41 -0.35 16 21 N -0.93 -57.43 13.97 21.65 0.30 -57.13 16 22 Si 0.90 43.74 26.35 68.60 1.81 45.55 16 23 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 24 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 25 H -0.23 -10.10 4.84 99.48 0.48 -9.62 16 26 C 0.15 6.06 6.51 86.43 0.56 6.62 16 27 C -0.08 -2.57 4.29 30.77 0.13 -2.44 16 28 H 0.09 2.04 4.89 -2.39 -0.01 2.03 16 29 H 0.08 2.12 7.39 -2.38 -0.02 2.10 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 1.98 7.50 -2.39 -0.02 1.96 16 32 H 0.13 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.20 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.12 3.00 4.65 -2.39 -0.01 2.99 16 37 H 0.06 1.91 7.78 -2.38 -0.02 1.89 16 38 H 0.09 2.08 8.10 -2.39 -0.02 2.06 16 39 H 0.03 1.30 6.80 -2.38 -0.02 1.28 16 40 H 0.04 1.92 5.34 -2.39 -0.01 1.90 16 41 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.04 1.77 7.92 -2.39 -0.02 1.75 16 44 H 0.05 1.58 7.20 -2.39 -0.02 1.56 16 45 H 0.06 1.92 5.97 -2.38 -0.01 1.91 16 Total: -1.00 -69.84 358.69 3.27 -66.57 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.78 Total: 15.33 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 6.87 Total: 1.63 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.82 Total: -113.11 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.05 Total: -17.66 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.81 Total: 45.55 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.31 Total: 1.70 kcal Total: -69.84 3.27 -66.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072138549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.813 kcal (2) G-P(sol) polarization free energy of solvation -69.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds