Wall clock time and date at job start Tue Mar 31 2020 18:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46498 * 119.99899 * 2 1 4 4 C 1.52998 * 109.47085 * 85.47700 * 3 2 1 5 5 H 1.08997 * 112.96676 * 293.44421 * 4 3 2 6 6 C 1.53946 * 113.76811 * 65.11959 * 4 3 2 7 7 C 1.53948 * 86.29015 * 137.91111 * 6 4 3 8 8 N 1.47573 * 113.77049 * 161.76226 * 4 3 2 9 9 C 1.36940 * 134.49522 * 41.06666 * 8 4 3 10 10 H 1.08007 * 119.99352 * 4.77637 * 9 8 4 11 11 C 1.38804 * 120.00629 * 184.77768 * 9 8 4 12 12 N 1.31625 * 119.99767 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00361 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47350 * 89.99860 * 13 11 9 15 15 H 1.48499 * 109.47192 * 210.00138 * 13 11 9 16 16 H 1.48497 * 109.46826 * 329.99607 * 13 11 9 17 17 C 1.34778 * 119.99519 * 180.02562 * 2 1 3 18 18 O 1.21692 * 119.99461 * 186.43378 * 17 2 1 19 19 C 1.46683 * 120.00461 * 6.43042 * 17 2 1 20 20 C 1.35661 * 126.13058 * 7.14164 * 19 17 2 21 21 N 1.30936 * 114.19308 * 180.02562 * 20 19 17 22 22 C 1.29430 * 117.36413 * 359.97438 * 21 20 19 23 23 C 1.50696 * 124.80536 * 180.02562 * 22 21 20 24 24 C 1.53008 * 109.47207 * 89.97959 * 23 22 21 25 25 C 1.53002 * 117.49891 * 243.74887 * 24 23 22 26 26 C 1.52994 * 117.49835 * 175.08820 * 24 23 22 27 27 S 1.70958 * 110.38989 * 359.72961 * 22 21 20 28 28 H 1.08998 * 109.46868 * 95.74466 * 1 2 3 29 29 H 1.09000 * 109.46863 * 215.74625 * 1 2 3 30 30 H 1.08999 * 109.46921 * 335.74735 * 1 2 3 31 31 H 1.08995 * 109.47201 * 325.47354 * 3 2 1 32 32 H 1.08996 * 109.46843 * 205.47515 * 3 2 1 33 33 H 1.09008 * 113.74481 * 252.25096 * 6 4 3 34 34 H 1.08997 * 113.74349 * 23.45506 * 6 4 3 35 35 H 1.08989 * 113.77301 * 90.69564 * 7 6 4 36 36 H 1.09000 * 113.76714 * 221.98174 * 7 6 4 37 37 H 0.97005 * 119.99893 * 180.02562 * 12 11 9 38 38 H 1.08005 * 122.90420 * 0.02562 * 20 19 17 39 39 H 1.09000 * 109.47318 * 209.97815 * 23 22 21 40 40 H 1.09005 * 109.47208 * 329.97982 * 23 22 21 41 41 H 1.08996 * 115.54762 * 29.41430 * 24 23 22 42 42 H 1.09000 * 117.49870 * 359.97438 * 25 24 23 43 43 H 1.08996 * 117.49549 * 145.01913 * 25 24 23 44 44 H 1.09008 * 117.49612 * 214.97736 * 26 24 23 45 45 H 1.09003 * 117.50089 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3540 1.7673 1.4380 5 1 1.4053 2.0440 1.8978 6 6 3.2280 0.8562 2.3189 7 6 3.8495 2.1527 2.8692 8 7 3.4136 2.7809 1.6042 9 6 3.8264 3.8658 0.8776 10 1 3.2773 4.1668 -0.0024 11 6 4.9503 4.5785 1.2721 12 7 5.6190 4.2119 2.3448 13 14 5.5128 6.0589 0.2813 14 1 4.8576 7.2838 0.8061 15 1 6.9869 6.1989 0.3943 16 1 5.1414 5.8706 -1.1441 17 6 2.1389 -1.1673 -0.0005 18 8 3.3500 -1.1706 0.1176 19 6 1.4124 -2.4335 -0.1434 20 6 0.0908 -2.5710 -0.4172 21 7 -0.3150 -3.8136 -0.4930 22 6 0.5682 -4.7405 -0.3034 23 6 0.2864 -6.2201 -0.3524 24 6 0.4841 -6.7299 -1.7814 25 6 -0.7410 -7.2888 -2.5079 26 6 0.3571 -8.2361 -2.0180 27 16 2.1014 -4.0488 0.0024 28 1 -0.3633 -0.1029 -1.0225 29 1 -0.3633 -0.8341 0.6004 30 1 -0.3633 0.9370 0.4221 31 1 1.6460 2.0067 -0.5824 32 1 3.1826 1.1195 -0.4420 33 1 2.6640 0.2907 3.0607 34 1 3.9260 0.2382 1.7542 35 1 3.3410 2.5443 3.7501 36 1 4.9318 2.1046 2.9892 37 1 6.4043 4.7102 2.6207 38 1 -0.5694 -1.7284 -0.5604 39 1 0.9694 -6.7424 0.3175 40 1 -0.7414 -6.4048 -0.0397 41 1 1.2181 -6.1870 -2.3769 42 1 -1.6877 -7.2937 -1.9677 43 1 -0.8126 -7.1140 -3.5814 44 1 1.0074 -8.6841 -2.7694 45 1 0.1331 -8.8640 -1.1555 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085738215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:17 Heat of formation + Delta-G solvation = 116.349158 kcal Electronic energy + Delta-G solvation = -26026.959112 eV Core-core repulsion = 22368.303527 eV Total energy + Delta-G solvation = -3658.655585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55109 -39.34558 -37.87825 -37.51310 -35.39149 -32.42977 -31.98195 -29.68288 -27.97485 -27.77040 -26.76833 -24.55971 -23.24193 -22.79517 -22.69451 -21.35621 -20.97175 -19.56133 -18.92135 -18.01955 -16.99302 -16.61547 -15.94276 -15.80676 -15.56628 -15.16912 -15.09650 -14.65489 -14.20381 -13.90877 -13.79737 -13.76048 -13.41803 -13.07604 -12.93879 -12.50283 -12.28592 -12.03475 -11.94446 -11.91841 -11.37757 -11.29499 -10.99069 -10.84403 -10.82783 -10.61394 -10.47282 -10.42465 -10.19127 -9.78265 -9.65648 -9.62692 -9.58549 -9.49642 -9.07890 -8.71186 -8.39495 -6.79926 -5.69090 -3.02785 0.09401 0.97601 1.51081 2.32520 3.11465 3.21291 3.34277 3.42223 3.46620 3.49141 3.72985 4.31153 4.45031 4.47130 4.50922 4.54523 4.70082 4.94902 4.97723 5.07197 5.18305 5.20437 5.20974 5.26326 5.28712 5.48517 5.49486 5.54993 5.61945 5.70310 5.77073 5.80423 5.90579 5.97622 6.14140 6.41508 6.57906 6.69415 6.78453 6.88277 7.34003 7.40245 7.43106 7.60049 7.70170 8.06381 8.24060 9.10047 9.77443 10.68320 11.46976 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.029540 B = 0.002244 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.625672 B =12474.912515 C =12597.234691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.595 5.595 3 C 0.118 3.882 4 C 0.128 3.872 5 H 0.041 0.959 6 C -0.157 4.157 7 C 0.155 3.845 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.918 5.918 13 Si 0.910 3.090 14 H -0.290 1.290 15 H -0.290 1.290 16 H -0.281 1.281 17 C 0.587 3.413 18 O -0.520 6.520 19 C -0.284 4.284 20 C 0.059 3.941 21 N -0.474 5.474 22 C 0.037 3.963 23 C -0.014 4.014 24 C -0.152 4.152 25 C -0.173 4.173 26 C -0.176 4.176 27 S 0.227 5.773 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.021 0.979 36 H 0.077 0.923 37 H 0.253 0.747 38 H 0.204 0.796 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 -23.443 -6.461 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.328 5.328 3 C -0.005 4.005 4 C 0.020 3.980 5 H 0.059 0.941 6 C -0.196 4.196 7 C 0.030 3.970 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.741 3.259 14 H -0.217 1.217 15 H -0.216 1.216 16 H -0.207 1.207 17 C 0.373 3.627 18 O -0.397 6.397 19 C -0.408 4.408 20 C -0.098 4.098 21 N -0.189 5.189 22 C -0.237 4.237 23 C -0.054 4.054 24 C -0.171 4.171 25 C -0.210 4.210 26 C -0.213 4.213 27 S 0.485 5.515 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.220 0.780 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.392 -23.745 -6.364 27.995 hybrid contribution -0.532 1.894 -0.577 2.050 sum -13.924 -21.851 -6.942 26.824 Atomic orbital electron populations 1.22400 0.80432 1.04143 1.01381 1.47543 1.06550 1.06036 1.72653 1.21941 0.97626 0.81703 0.99184 1.22519 0.93021 0.89619 0.92842 0.94149 1.23840 0.99504 0.97490 0.98735 1.22309 1.00111 0.86570 0.88011 1.45954 1.34073 1.29928 1.22675 1.18964 1.07251 1.02972 1.05786 0.90491 1.24789 0.97786 0.99752 0.98122 1.69836 1.20081 1.41274 1.25321 0.86149 0.77875 0.82555 0.79336 1.21740 1.21650 1.20652 1.16712 0.86564 0.81878 0.77565 1.90875 1.13079 1.86610 1.49150 1.25874 0.98752 0.99110 1.17112 1.23450 0.93093 0.95007 0.98230 1.66214 1.36002 0.99730 1.16913 1.27398 0.93574 1.00692 1.02054 1.19863 1.04102 0.85323 0.96158 1.22198 1.02233 0.96539 0.96174 1.23060 0.93588 1.03532 1.00786 1.23028 1.02728 0.91906 1.03651 1.84139 1.10434 0.95373 1.61544 0.91981 0.90179 0.89950 0.91047 0.88712 0.94205 0.89123 0.96127 0.90516 0.93723 0.78017 0.88966 0.88435 0.87572 0.88409 0.88745 0.88518 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 8.66 59.85 0.52 1.11 16 2 N -0.59 -8.82 2.80 -183.12 -0.51 -9.33 16 3 C 0.12 2.16 5.35 -4.04 -0.02 2.13 16 4 C 0.13 2.68 4.58 -66.87 -0.31 2.37 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.37 7.17 -25.79 -0.18 -3.56 16 7 C 0.15 3.91 7.64 -2.85 -0.02 3.89 16 8 N -0.60 -15.77 3.58 -169.75 -0.61 -16.38 16 9 C -0.22 -6.28 10.51 -15.06 -0.16 -6.44 16 10 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.03 11.32 55.49 0.63 -27.40 16 13 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.59 9.55 7.27 -12.85 -0.09 9.46 16 18 O -0.52 -10.49 14.46 5.20 0.08 -10.41 16 19 C -0.28 -3.75 6.33 -37.10 -0.23 -3.99 16 20 C 0.06 0.66 9.45 -18.86 -0.18 0.48 16 21 N -0.47 -5.34 10.51 -11.50 -0.12 -5.46 16 22 C 0.04 0.37 6.59 -13.29 -0.09 0.28 16 23 C -0.01 -0.09 6.07 -27.88 -0.17 -0.26 16 24 C -0.15 -1.01 5.72 -90.62 -0.52 -1.53 16 25 C -0.17 -1.04 10.18 -26.69 -0.27 -1.31 16 26 C -0.18 -0.91 10.25 -26.70 -0.27 -1.18 16 27 S 0.23 2.55 23.02 -107.50 -2.47 0.08 16 28 H 0.06 0.49 7.30 -51.93 -0.38 0.11 16 29 H 0.08 0.70 5.39 -51.93 -0.28 0.42 16 30 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 31 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.09 2.03 7.38 -51.93 -0.38 1.65 16 33 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.09 2.10 6.19 -51.93 -0.32 1.78 16 35 H 0.02 0.52 8.14 -51.94 -0.42 0.10 16 36 H 0.08 2.14 6.97 -51.93 -0.36 1.78 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.20 1.77 3.94 -52.48 -0.21 1.56 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.62 7.88 -51.93 -0.41 0.21 16 41 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.45 8.14 -51.92 -0.42 0.03 16 45 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -34.59 378.27 -10.95 -45.54 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.52 Total: -1.01 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.10 Total: 1.14 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.61 Total: -58.57 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.47 Total: 0.08 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.59 -10.95 -45.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085738215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.892 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds