Wall clock time and date at job start Tue Mar 31 2020 18:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00030 * 2 1 4 4 C 1.52994 * 109.47405 * 276.70881 * 3 2 1 5 5 H 1.08998 * 112.96622 * 71.78399 * 4 3 2 6 6 C 1.53950 * 113.76923 * 300.10656 * 4 3 2 7 7 C 1.53943 * 86.28966 * 222.09174 * 6 4 3 8 8 N 1.47577 * 86.23901 * 23.55204 * 7 6 4 9 9 C 1.36937 * 134.49014 * 155.42880 * 8 7 6 10 10 H 1.08000 * 119.99862 * 187.98575 * 9 8 7 11 11 C 1.38819 * 120.00298 * 7.99158 * 9 8 7 12 12 N 1.31613 * 119.99816 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00084 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47443 * 89.99559 * 13 11 9 15 15 H 1.48507 * 109.46973 * 209.99660 * 13 11 9 16 16 H 1.48499 * 109.47075 * 329.99136 * 13 11 9 17 17 C 1.34774 * 119.99956 * 180.02562 * 2 1 3 18 18 O 1.21685 * 119.99830 * 185.12729 * 17 2 1 19 19 C 1.46688 * 120.00138 * 5.12131 * 17 2 1 20 20 C 1.35666 * 126.12952 * 186.34326 * 19 17 2 21 21 N 1.30938 * 114.18884 * 180.02562 * 20 19 17 22 22 C 1.29430 * 117.36802 * 359.97438 * 21 20 19 23 23 C 1.50699 * 124.80909 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.46695 * 89.97955 * 23 22 21 25 25 C 1.53003 * 117.49708 * 243.62397 * 24 23 22 26 26 C 1.53001 * 117.49867 * 175.00266 * 24 23 22 27 27 S 1.70961 * 110.38792 * 359.73061 * 22 21 20 28 28 H 1.08992 * 109.47709 * 96.04991 * 1 2 3 29 29 H 1.08999 * 109.46978 * 216.04972 * 1 2 3 30 30 H 1.08997 * 109.47280 * 336.04713 * 1 2 3 31 31 H 1.08999 * 109.46653 * 156.70465 * 3 2 1 32 32 H 1.09007 * 109.46638 * 36.70846 * 3 2 1 33 33 H 1.09005 * 113.74034 * 107.74312 * 6 4 3 34 34 H 1.08999 * 113.83540 * 336.45012 * 6 4 3 35 35 H 1.09005 * 113.76740 * 137.90910 * 7 6 4 36 36 H 1.09003 * 113.76903 * 269.19120 * 7 6 4 37 37 H 0.96997 * 120.00426 * 180.02562 * 12 11 9 38 38 H 1.07998 * 122.90243 * 359.97438 * 20 19 17 39 39 H 1.09000 * 109.47595 * 209.98014 * 23 22 21 40 40 H 1.09002 * 109.47117 * 329.98545 * 23 22 21 41 41 H 1.08997 * 115.55517 * 29.33165 * 24 23 22 42 42 H 1.08999 * 117.50206 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.50063 * 145.02410 * 25 24 23 44 44 H 1.08998 * 117.50458 * 214.98202 * 26 24 23 45 45 H 1.08998 * 117.49731 * 359.97396 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3066 1.7947 -1.4325 5 1 1.3585 2.1643 -1.8233 6 6 3.0422 0.8395 -2.3899 7 6 3.7378 2.0945 -2.9475 8 7 3.4396 2.7199 -1.6445 9 6 3.9917 3.7446 -0.9230 10 1 3.6599 3.9338 0.0871 11 6 4.9778 4.5402 -1.4902 12 7 5.3824 4.3094 -2.7211 13 14 5.7314 5.9375 -0.5058 14 1 6.9133 5.4362 0.2404 15 1 6.1521 7.0224 -1.4285 16 1 4.7277 6.4649 0.4532 17 6 2.1389 -1.1672 -0.0005 18 8 3.3520 -1.1693 0.0937 19 6 1.4098 -2.4350 -0.1145 20 6 1.9442 -3.6774 -0.0077 21 7 1.0772 -4.6483 -0.1495 22 6 -0.1550 -4.3184 -0.3686 23 6 -1.2869 -5.2955 -0.5561 24 6 -1.9180 -5.6114 0.8014 25 6 -1.8268 -7.0534 1.3044 26 6 -3.1647 -6.4983 0.8116 27 16 -0.3183 -2.6170 -0.4069 28 1 -0.3634 -0.1083 -1.0218 29 1 -0.3633 -0.8309 0.6048 30 1 -0.3634 0.9391 0.4172 31 1 3.1966 1.1113 0.4064 32 1 1.6656 1.9953 0.6143 33 1 2.3863 0.3460 -3.1072 34 1 3.7197 0.1485 -1.8883 35 1 4.8027 1.9592 -3.1364 36 1 3.2120 2.5526 -3.7853 37 1 6.0717 4.8651 -3.1173 38 1 2.9940 -3.8505 0.1774 39 1 -2.0387 -4.8589 -1.2136 40 1 -0.9040 -6.2139 -1.0013 41 1 -1.8611 -4.8147 1.5431 42 1 -1.3168 -7.7770 0.6686 43 1 -1.7097 -7.2058 2.3774 44 1 -3.9278 -6.2854 1.5602 45 1 -3.5354 -6.8565 -0.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085738216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:20 Heat of formation + Delta-G solvation = 99.456075 kcal Electronic energy + Delta-G solvation = -26112.580042 eV Core-core repulsion = 22453.191918 eV Total energy + Delta-G solvation = -3659.388124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.31128 -39.47915 -37.89636 -37.54197 -35.35643 -32.29860 -32.01980 -29.61756 -28.19460 -27.79043 -26.59407 -24.67901 -23.27271 -22.88313 -22.78002 -21.25350 -20.92856 -19.03825 -18.90865 -18.45086 -16.87000 -16.47086 -16.32868 -15.96048 -15.63710 -15.23318 -14.97913 -14.65418 -14.19377 -13.89118 -13.80356 -13.68789 -13.43513 -13.16141 -13.15231 -12.74412 -12.37661 -12.07757 -11.99881 -11.92894 -11.62689 -11.37234 -11.02291 -10.89349 -10.85279 -10.69690 -10.43756 -10.41490 -10.02542 -9.87660 -9.71540 -9.66272 -9.54666 -9.43984 -9.08291 -8.75856 -8.40016 -6.81839 -5.72822 -3.04731 0.10997 1.01214 1.43292 2.37072 2.98342 3.22122 3.33633 3.42146 3.46371 3.48366 3.75310 4.31218 4.44694 4.46492 4.50200 4.56293 4.72998 4.84973 5.02878 5.16277 5.18910 5.22346 5.23137 5.23716 5.26697 5.45565 5.47646 5.49457 5.56498 5.69622 5.76503 5.86019 5.91668 5.96313 6.09570 6.36270 6.50600 6.64407 6.76154 6.79669 7.29926 7.34846 7.49932 7.54230 7.63976 8.02621 8.19313 9.08636 9.75204 10.66388 11.45107 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.002289 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.732320 B =12231.844546 C =12314.152530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.116 3.884 4 C 0.127 3.873 5 H 0.043 0.957 6 C -0.161 4.161 7 C 0.167 3.833 8 N -0.599 5.599 9 C -0.223 4.223 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.919 5.919 13 Si 0.910 3.090 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.591 3.409 18 O -0.514 6.514 19 C -0.286 4.286 20 C 0.116 3.884 21 N -0.477 5.477 22 C 0.031 3.969 23 C -0.015 4.015 24 C -0.151 4.151 25 C -0.173 4.173 26 C -0.176 4.176 27 S 0.190 5.810 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.253 0.747 38 H 0.187 0.813 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.863 -20.150 5.521 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.335 5.335 3 C -0.007 4.007 4 C 0.019 3.981 5 H 0.060 0.940 6 C -0.199 4.199 7 C 0.042 3.958 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.566 5.566 13 Si 0.740 3.260 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.377 3.623 18 O -0.391 6.391 19 C -0.410 4.410 20 C -0.041 4.041 21 N -0.191 5.191 22 C -0.243 4.243 23 C -0.056 4.056 24 C -0.170 4.170 25 C -0.210 4.210 26 C -0.213 4.213 27 S 0.448 5.552 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.203 0.797 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.732 -19.738 5.477 28.442 hybrid contribution 1.191 0.801 0.560 1.541 sum -18.541 -18.937 6.037 27.181 Atomic orbital electron populations 1.21986 0.80524 1.03148 1.02409 1.47600 1.06385 1.06478 1.73008 1.21944 0.98098 0.81648 0.99032 1.22566 0.92497 0.90464 0.92580 0.93961 1.23810 0.99635 0.97886 0.98586 1.22058 0.99055 0.86541 0.88133 1.45999 1.29993 1.37526 1.19049 1.18967 1.15904 1.05121 0.95071 0.90386 1.24829 1.00104 0.99175 0.96271 1.69836 1.32349 1.41001 1.13369 0.86160 0.79222 0.81864 0.78743 1.21521 1.21700 1.20706 1.16728 0.86626 0.81696 0.77233 1.90880 1.12531 1.86264 1.49404 1.25884 0.96777 0.99683 1.18684 1.22161 1.00927 0.85240 0.95767 1.66261 1.00689 1.36184 1.15921 1.27735 0.96093 0.99433 1.01026 1.19867 0.91924 0.97318 0.96457 1.22179 1.01842 0.95112 0.97897 1.23052 1.00241 0.95956 1.01757 1.23015 0.91252 1.03767 1.03298 1.84322 1.05062 1.01553 1.64296 0.91581 0.91253 0.88943 0.88291 0.91143 0.93874 0.89913 0.91862 0.95466 0.93667 0.79652 0.89031 0.88627 0.87623 0.88408 0.88751 0.88542 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.65 8.90 59.85 0.53 1.18 16 2 N -0.60 -8.85 2.72 -183.13 -0.50 -9.35 16 3 C 0.12 2.07 5.53 -4.04 -0.02 2.05 16 4 C 0.13 2.61 4.61 -66.74 -0.31 2.30 16 5 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.16 -3.34 7.20 -25.79 -0.19 -3.53 16 7 C 0.17 4.17 7.33 -2.98 -0.02 4.15 16 8 N -0.60 -15.64 3.58 -169.76 -0.61 -16.24 16 9 C -0.22 -6.29 10.52 -15.06 -0.16 -6.45 16 10 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.97 11.62 55.49 0.64 -27.32 16 13 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.59 9.55 7.01 -12.85 -0.09 9.46 16 18 O -0.51 -10.30 15.12 5.20 0.08 -10.22 16 19 C -0.29 -3.76 6.23 -37.09 -0.23 -3.99 16 20 C 0.12 1.51 11.10 -18.85 -0.21 1.30 16 21 N -0.48 -5.80 10.51 -11.50 -0.12 -5.92 16 22 C 0.03 0.30 6.59 -13.29 -0.09 0.21 16 23 C -0.02 -0.10 6.07 -27.88 -0.17 -0.27 16 24 C -0.15 -0.95 5.72 -90.62 -0.52 -1.47 16 25 C -0.17 -1.04 10.18 -26.73 -0.27 -1.31 16 26 C -0.18 -0.86 10.25 -26.73 -0.27 -1.14 16 27 S 0.19 1.73 18.08 -107.50 -1.94 -0.21 16 28 H 0.07 0.60 7.59 -51.93 -0.39 0.21 16 29 H 0.07 0.60 5.03 -27.05 -0.14 0.46 16 30 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 31 H 0.10 2.10 7.18 -51.93 -0.37 1.72 16 32 H 0.07 1.14 7.97 -51.93 -0.41 0.73 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.85 6.69 -51.93 -0.35 1.50 16 35 H 0.06 1.73 7.54 -51.93 -0.39 1.34 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.19 2.34 8.06 -52.49 -0.42 1.91 16 39 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.10 0.64 7.88 -51.93 -0.41 0.23 16 41 H 0.11 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.10 0.57 8.03 -51.93 -0.42 0.16 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -34.37 380.30 -10.49 -44.86 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.64 Total: -0.99 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.11 Total: 2.19 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.58 Total: -58.84 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.94 Total: -0.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.37 -10.49 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085738216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.318 kcal (2) G-P(sol) polarization free energy of solvation -34.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds