Wall clock time and date at job start Tue Mar 31 2020 18:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00030 * 2 1 4 4 C 1.52994 * 109.47405 * 276.70881 * 3 2 1 5 5 H 1.08998 * 112.96622 * 71.78399 * 4 3 2 6 6 C 1.53950 * 113.76923 * 300.10656 * 4 3 2 7 7 C 1.53943 * 86.28966 * 222.09174 * 6 4 3 8 8 N 1.47577 * 86.23901 * 23.55204 * 7 6 4 9 9 C 1.36937 * 134.49014 * 155.42880 * 8 7 6 10 10 H 1.08000 * 119.99862 * 187.98575 * 9 8 7 11 11 C 1.38819 * 120.00298 * 7.99158 * 9 8 7 12 12 N 1.31613 * 119.99816 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00084 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47443 * 89.99559 * 13 11 9 15 15 H 1.48507 * 109.46973 * 209.99660 * 13 11 9 16 16 H 1.48499 * 109.47075 * 329.99136 * 13 11 9 17 17 C 1.34774 * 119.99956 * 180.02562 * 2 1 3 18 18 O 1.21685 * 119.99830 * 185.12729 * 17 2 1 19 19 C 1.46688 * 120.00138 * 5.12131 * 17 2 1 20 20 C 1.35666 * 126.12952 * 186.34326 * 19 17 2 21 21 N 1.30938 * 114.18884 * 180.02562 * 20 19 17 22 22 C 1.29430 * 117.36802 * 359.97438 * 21 20 19 23 23 C 1.50699 * 124.80909 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.46695 * 89.97955 * 23 22 21 25 25 C 1.53003 * 117.49708 * 243.62397 * 24 23 22 26 26 C 1.53001 * 117.49867 * 175.00266 * 24 23 22 27 27 S 1.70961 * 110.38792 * 359.73061 * 22 21 20 28 28 H 1.08992 * 109.47709 * 96.04991 * 1 2 3 29 29 H 1.08999 * 109.46978 * 216.04972 * 1 2 3 30 30 H 1.08997 * 109.47280 * 336.04713 * 1 2 3 31 31 H 1.08999 * 109.46653 * 156.70465 * 3 2 1 32 32 H 1.09007 * 109.46638 * 36.70846 * 3 2 1 33 33 H 1.09005 * 113.74034 * 107.74312 * 6 4 3 34 34 H 1.08999 * 113.83540 * 336.45012 * 6 4 3 35 35 H 1.09005 * 113.76740 * 137.90910 * 7 6 4 36 36 H 1.09003 * 113.76903 * 269.19120 * 7 6 4 37 37 H 0.96997 * 120.00426 * 180.02562 * 12 11 9 38 38 H 1.07998 * 122.90243 * 359.97438 * 20 19 17 39 39 H 1.09000 * 109.47595 * 209.98014 * 23 22 21 40 40 H 1.09002 * 109.47117 * 329.98545 * 23 22 21 41 41 H 1.08997 * 115.55517 * 29.33165 * 24 23 22 42 42 H 1.08999 * 117.50206 * 0.02562 * 25 24 23 43 43 H 1.09003 * 117.50063 * 145.02410 * 25 24 23 44 44 H 1.08998 * 117.50458 * 214.98202 * 26 24 23 45 45 H 1.08998 * 117.49731 * 359.97396 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3066 1.7947 -1.4325 5 1 1.3585 2.1643 -1.8233 6 6 3.0422 0.8395 -2.3899 7 6 3.7378 2.0945 -2.9475 8 7 3.4396 2.7199 -1.6445 9 6 3.9917 3.7446 -0.9230 10 1 3.6599 3.9338 0.0871 11 6 4.9778 4.5402 -1.4902 12 7 5.3824 4.3094 -2.7211 13 14 5.7314 5.9375 -0.5058 14 1 6.9133 5.4362 0.2404 15 1 6.1521 7.0224 -1.4285 16 1 4.7277 6.4649 0.4532 17 6 2.1389 -1.1672 -0.0005 18 8 3.3520 -1.1693 0.0937 19 6 1.4098 -2.4350 -0.1145 20 6 1.9442 -3.6774 -0.0077 21 7 1.0772 -4.6483 -0.1495 22 6 -0.1550 -4.3184 -0.3686 23 6 -1.2869 -5.2955 -0.5561 24 6 -1.9180 -5.6114 0.8014 25 6 -1.8268 -7.0534 1.3044 26 6 -3.1647 -6.4983 0.8116 27 16 -0.3183 -2.6170 -0.4069 28 1 -0.3634 -0.1083 -1.0218 29 1 -0.3633 -0.8309 0.6048 30 1 -0.3634 0.9391 0.4172 31 1 3.1966 1.1113 0.4064 32 1 1.6656 1.9953 0.6143 33 1 2.3863 0.3460 -3.1072 34 1 3.7197 0.1485 -1.8883 35 1 4.8027 1.9592 -3.1364 36 1 3.2120 2.5526 -3.7853 37 1 6.0717 4.8651 -3.1173 38 1 2.9940 -3.8505 0.1774 39 1 -2.0387 -4.8589 -1.2136 40 1 -0.9040 -6.2139 -1.0013 41 1 -1.8611 -4.8147 1.5431 42 1 -1.3168 -7.7770 0.6686 43 1 -1.7097 -7.2058 2.3774 44 1 -3.9278 -6.2854 1.5602 45 1 -3.5354 -6.8565 -0.1488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085738216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:19 Heat of formation + Delta-G solvation = 78.064256 kcal Electronic energy + Delta-G solvation = -26113.507661 eV Core-core repulsion = 22453.191918 eV Total energy + Delta-G solvation = -3660.315743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41753 -40.56421 -39.34613 -38.29281 -36.63699 -34.25593 -32.97241 -30.73557 -29.85544 -29.24964 -27.64404 -25.64097 -25.28166 -24.30930 -23.17330 -22.23156 -21.68965 -20.84698 -19.85839 -19.46373 -18.65568 -17.59126 -17.50844 -17.15581 -16.74941 -16.41063 -15.94030 -15.93424 -15.76607 -15.31149 -14.88843 -14.57862 -14.37953 -14.25102 -14.18066 -13.99401 -13.67479 -13.41769 -13.30211 -12.95612 -12.65967 -12.56925 -12.49742 -12.47049 -12.29703 -12.26701 -11.85516 -11.61681 -11.36860 -11.28279 -11.13945 -10.86349 -10.85956 -10.55376 -10.40678 -10.04396 -9.60854 -8.89029 -7.90249 -5.23134 -0.78881 0.17108 0.58819 1.38891 1.43983 1.47184 1.54845 1.80661 2.11139 2.48866 2.89504 3.04818 3.29609 3.38803 3.52017 3.83712 3.87787 3.91788 4.05062 4.06973 4.15595 4.19625 4.23751 4.29993 4.44177 4.51251 4.55571 4.69186 4.72127 4.74905 4.77740 4.81876 4.87393 4.97118 5.04818 5.07551 5.10932 5.19408 5.30168 5.33330 5.40535 5.52293 5.69720 5.93247 6.21918 6.63987 6.91410 6.99267 7.61697 8.58441 9.28329 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.033217 B = 0.002289 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.732320 B =12231.844546 C =12314.152530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.599 5.599 3 C 0.129 3.871 4 C 0.136 3.864 5 H 0.069 0.931 6 C -0.137 4.137 7 C 0.162 3.838 8 N -0.629 5.629 9 C -0.226 4.226 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.957 5.957 13 Si 0.978 3.022 14 H -0.291 1.291 15 H -0.295 1.295 16 H -0.262 1.262 17 C 0.588 3.412 18 O -0.568 6.568 19 C -0.322 4.322 20 C 0.114 3.886 21 N -0.503 5.503 22 C 0.033 3.967 23 C -0.016 4.016 24 C -0.159 4.159 25 C -0.187 4.187 26 C -0.159 4.159 27 S 0.272 5.728 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.247 0.753 38 H 0.175 0.825 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.927 -20.701 6.219 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.330 5.330 3 C 0.005 3.995 4 C 0.029 3.971 5 H 0.086 0.914 6 C -0.175 4.175 7 C 0.037 3.963 8 N -0.356 5.356 9 C -0.354 4.354 10 H 0.106 0.894 11 C -0.266 4.266 12 N -0.607 5.607 13 Si 0.806 3.194 14 H -0.218 1.218 15 H -0.222 1.222 16 H -0.187 1.187 17 C 0.376 3.624 18 O -0.449 6.449 19 C -0.446 4.446 20 C -0.045 4.045 21 N -0.217 5.217 22 C -0.240 4.240 23 C -0.056 4.056 24 C -0.179 4.179 25 C -0.224 4.224 26 C -0.196 4.196 27 S 0.531 5.469 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.056 0.944 38 H 0.192 0.808 39 H 0.137 0.863 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.123 0.877 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -23.896 -20.308 6.197 31.966 hybrid contribution 2.321 0.830 0.349 2.489 sum -21.575 -19.478 6.546 29.795 Atomic orbital electron populations 1.22354 0.77238 1.05221 1.04100 1.47584 1.08264 1.04827 1.72352 1.21531 0.97200 0.83535 0.97254 1.22735 0.91764 0.88404 0.94160 0.91374 1.23522 0.99155 0.96123 0.98700 1.21981 0.97176 0.88937 0.88252 1.46339 1.32219 1.37739 1.19318 1.19407 1.15451 1.04835 0.95702 0.89376 1.25714 1.01282 1.02156 0.97496 1.70032 1.33239 1.42200 1.15195 0.85084 0.78383 0.78534 0.77389 1.21798 1.22183 1.18669 1.17139 0.86209 0.82871 0.76198 1.90847 1.15047 1.87175 1.51826 1.25634 0.99852 0.98063 1.21016 1.22132 1.01014 0.85783 0.95597 1.66326 1.01655 1.36163 1.17600 1.28378 0.96026 1.00963 0.98657 1.20069 0.91394 0.96909 0.97264 1.22159 1.03146 0.95083 0.97520 1.23117 1.01639 0.95953 1.01736 1.23097 0.90637 1.01903 1.03980 1.83840 1.00558 0.99998 1.62483 0.89794 0.89720 0.86601 0.92273 0.88773 0.90610 0.91876 0.95734 0.95827 0.94433 0.80805 0.86345 0.88518 0.88039 0.88562 0.89011 0.87704 0.87234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.87 8.90 127.77 1.14 2.00 16 2 N -0.60 -16.51 2.72 -851.53 -2.32 -18.83 16 3 C 0.13 4.46 5.53 86.38 0.48 4.94 16 4 C 0.14 5.40 4.61 45.05 0.21 5.61 16 5 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 6 C -0.14 -5.65 7.20 31.25 0.22 -5.43 16 7 C 0.16 8.30 7.33 86.48 0.63 8.94 16 8 N -0.63 -33.16 3.58 -691.01 -2.47 -35.64 16 9 C -0.23 -12.84 10.52 84.04 0.88 -11.95 16 10 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 11 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 12 N -0.96 -60.33 11.62 21.65 0.25 -60.08 16 13 Si 0.98 47.04 29.55 68.60 2.03 49.07 16 14 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 15 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 17 C 0.59 18.88 7.01 86.45 0.61 19.49 16 18 O -0.57 -23.86 15.12 -4.30 -0.07 -23.93 16 19 C -0.32 -8.14 6.23 23.88 0.15 -7.99 16 20 C 0.11 2.98 11.10 84.23 0.93 3.91 16 21 N -0.50 -11.79 10.51 -190.30 -2.00 -13.79 16 22 C 0.03 0.55 6.59 88.46 0.58 1.14 16 23 C -0.02 -0.17 6.07 29.85 0.18 0.02 16 24 C -0.16 -1.58 5.72 -10.79 -0.06 -1.65 16 25 C -0.19 -1.92 10.18 30.60 0.31 -1.60 16 26 C -0.16 -1.07 10.25 30.60 0.31 -0.76 16 27 S 0.27 4.05 18.08 -56.49 -1.02 3.03 16 28 H 0.08 1.11 7.59 -2.39 -0.02 1.09 16 29 H 0.09 1.10 5.03 -18.21 -0.09 1.01 16 30 H 0.12 1.40 7.90 -2.39 -0.02 1.38 16 31 H 0.06 2.56 7.18 -2.39 -0.02 2.54 16 32 H 0.09 2.81 7.97 -2.38 -0.02 2.79 16 33 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 34 H 0.06 2.90 6.69 -2.39 -0.02 2.88 16 35 H 0.02 1.41 7.54 -2.38 -0.02 1.40 16 36 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 38 H 0.17 4.73 8.06 -2.91 -0.02 4.71 16 39 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 1.04 7.88 -2.39 -0.02 1.02 16 41 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 42 H 0.10 1.00 8.03 -2.39 -0.02 0.98 16 43 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -78.88 380.30 2.36 -76.51 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.91 Total: 10.88 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 7.05 Total: 12.78 kcal Atomic # 7 Polarization: -121.80 SS G_CDS: -6.54 Total: -128.34 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.02 Total: 3.03 kcal Total: -78.88 2.36 -76.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085738216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.579 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds