Wall clock time and date at job start Tue Mar 31 2020 19:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00350 * 2 1 4 4 O 1.20831 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00516 * 179.97438 * 3 2 1 6 6 C 1.52995 * 109.47673 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.47656 * 179.97438 * 6 5 3 8 8 C 1.52996 * 109.47283 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47144 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99561 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99933 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47005 * 179.97438 * 12 11 9 14 14 C 1.38328 * 119.96230 * 269.97666 * 13 12 11 15 15 C 1.38280 * 120.13484 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.07150 * 359.67534 * 15 14 13 17 17 C 1.38861 * 119.92830 * 0.59673 * 16 15 14 18 18 O 1.35751 * 120.06597 * 179.69892 * 17 16 15 19 19 C 1.34829 * 117.00376 * 354.17384 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38657 * 120.00083 * 185.03464 * 19 18 17 22 22 N 1.31555 * 119.99797 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99748 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47410 * 90.00109 * 23 21 19 25 25 H 1.48504 * 109.46801 * 209.99865 * 23 21 19 26 26 H 1.48497 * 109.47495 * 329.99577 * 23 21 19 27 27 C 1.38073 * 119.96947 * 89.99513 * 13 12 11 28 28 H 1.08998 * 109.47054 * 59.99882 * 1 2 3 29 29 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46986 * 300.00258 * 1 2 3 31 31 H 1.09007 * 109.46934 * 59.99626 * 5 3 2 32 32 H 1.09003 * 109.47088 * 299.99909 * 5 3 2 33 33 H 1.09007 * 109.46985 * 59.99977 * 6 5 3 34 34 H 1.09003 * 109.47051 * 300.00251 * 6 5 3 35 35 H 1.09007 * 109.46913 * 59.99969 * 7 6 5 36 36 H 1.09003 * 109.47125 * 300.00242 * 7 6 5 37 37 H 1.09007 * 109.47155 * 60.00137 * 8 7 6 38 38 H 1.09003 * 109.47254 * 300.00184 * 8 7 6 39 39 H 0.97001 * 119.99467 * 359.97438 * 11 9 8 40 40 H 1.08993 * 109.47130 * 59.99768 * 12 11 9 41 41 H 1.09003 * 109.47080 * 299.99631 * 12 11 9 42 42 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 43 43 H 1.08007 * 119.96121 * 179.97438 * 15 14 13 44 44 H 1.08001 * 120.03709 * 180.32387 * 16 15 14 45 45 H 0.96998 * 119.99749 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.03594 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7420 -0.0002 7 6 5.5281 2.8221 0.0011 8 6 5.9619 4.2893 -0.0004 9 6 7.4669 4.3682 0.0002 10 8 8.1274 3.3510 0.0012 11 7 8.0788 5.5690 -0.0003 12 6 9.5418 5.6456 -0.0003 13 6 9.9691 7.0908 -0.0016 14 6 10.1655 7.7521 -1.2006 15 6 10.5581 9.0779 -1.2059 16 6 10.7488 9.7480 -0.0133 17 6 10.5580 9.0854 1.1920 18 8 10.7506 9.7396 2.3657 19 6 11.2425 10.9929 2.2945 20 1 11.3880 11.4620 1.3327 21 6 11.5617 11.6795 3.4561 22 7 12.0421 12.9022 3.3865 23 14 11.3107 10.8677 5.1197 24 1 12.5456 10.1393 5.5064 25 1 11.0098 11.9068 6.1370 26 1 10.1772 9.9119 5.0382 27 6 10.1645 7.7533 1.1940 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7810 0.8909 33 1 3.6101 3.2367 0.8894 34 1 3.6109 3.2356 -0.8907 35 1 5.9186 2.3273 -0.8883 36 1 5.9171 2.3287 0.8917 37 1 5.5714 4.7845 0.8887 38 1 5.5730 4.7824 -0.8913 39 1 7.5504 6.3825 -0.0014 40 1 9.9315 5.1511 -0.8900 41 1 9.9315 5.1519 0.8900 42 1 10.0119 7.2317 -2.1344 43 1 10.7110 9.5914 -2.1437 44 1 11.0504 10.7851 -0.0181 45 1 12.2650 13.3826 4.1991 46 1 10.0117 7.2363 2.1298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116942585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:03 Heat of formation + Delta-G solvation = -166.162227 kcal Electronic energy + Delta-G solvation = -26600.424578 eV Core-core repulsion = 22454.472758 eV Total energy + Delta-G solvation = -4145.951820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48388 -41.10660 -40.54991 -38.60076 -37.72736 -36.22916 -35.65567 -34.45862 -32.64476 -31.78836 -30.95664 -28.90846 -27.62328 -27.07899 -25.70111 -23.35028 -22.78284 -22.21527 -21.46083 -21.22611 -19.70763 -19.04768 -18.57609 -17.78936 -17.73719 -17.48200 -16.99014 -16.93829 -16.72906 -16.56520 -15.91645 -15.69049 -15.58317 -15.09787 -14.71515 -14.62340 -14.58459 -14.35150 -14.18710 -13.86055 -13.68249 -13.54360 -13.20446 -13.11938 -12.90007 -12.68567 -12.54562 -12.47164 -12.37061 -12.24373 -12.07687 -11.94757 -11.81740 -11.53637 -11.48185 -11.33057 -10.96630 -10.88218 -10.06489 -9.78308 -9.12852 -8.50758 -6.23625 0.35273 0.64219 1.18014 1.31302 1.34615 1.50851 1.71394 1.78928 2.26854 2.33124 2.80008 2.98171 3.16097 3.71254 3.75597 3.86137 3.92634 4.03147 4.06054 4.26827 4.29000 4.30937 4.38106 4.42503 4.48991 4.50302 4.51999 4.65687 4.70684 4.73187 4.79727 4.84685 4.87944 4.92956 5.08134 5.18612 5.32789 5.36032 5.38671 5.43268 5.51903 5.62549 5.68601 5.74481 5.88623 6.18838 6.60430 6.72322 6.83761 7.29389 7.57501 8.60630 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.016325 B = 0.001607 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.727981 B =17416.765402 C =18384.151030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.458 3.542 4 O -0.543 6.543 5 C -0.111 4.111 6 C -0.103 4.103 7 C -0.097 4.097 8 C -0.137 4.137 9 C 0.510 3.490 10 O -0.585 6.585 11 N -0.719 5.719 12 C 0.173 3.827 13 C -0.061 4.061 14 C -0.159 4.159 15 C -0.074 4.074 16 C -0.229 4.229 17 C 0.119 3.881 18 O -0.245 6.245 19 C -0.399 4.399 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.922 5.922 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.263 1.263 27 C -0.170 4.170 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.116 0.884 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.149 0.851 43 H 0.144 0.856 44 H 0.110 0.890 45 H 0.284 0.716 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.108 -24.651 -9.547 32.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.304 3.696 4 O -0.433 6.433 5 C -0.149 4.149 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.176 4.176 9 C 0.298 3.702 10 O -0.465 6.465 11 N -0.371 5.371 12 C 0.050 3.950 13 C -0.062 4.062 14 C -0.178 4.178 15 C -0.092 4.092 16 C -0.248 4.248 17 C 0.070 3.930 18 O -0.153 6.153 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.187 4.187 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.187 1.187 27 C -0.190 4.190 28 H 0.079 0.921 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.249 0.751 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.127 0.873 45 H 0.094 0.906 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.831 -24.977 -9.209 32.608 hybrid contribution -0.084 1.175 0.745 1.393 sum -18.915 -23.803 -8.465 31.559 Atomic orbital electron populations 1.23505 0.75160 1.05543 1.02367 1.86515 1.24782 1.33388 1.83769 1.24462 0.93350 0.80872 0.70954 1.90671 1.68295 1.37402 1.46962 1.21528 0.85203 1.00290 1.07839 1.21370 0.94926 0.94159 1.03604 1.21245 0.94069 0.94714 1.03469 1.21727 0.89257 1.00149 1.06512 1.21326 0.91899 0.82415 0.74519 1.90684 1.68331 1.35885 1.51644 1.46117 1.06912 1.09197 1.74840 1.20015 0.80941 0.91193 1.02890 1.19503 0.99579 0.94990 0.92083 1.21038 1.04497 0.94452 0.97810 1.21146 0.96276 0.94877 0.96871 1.21401 1.09142 1.01154 0.93139 1.19584 0.95356 0.92397 0.85656 1.83517 1.75319 1.28173 1.28307 1.20703 1.42587 0.87900 0.96336 0.89928 1.25239 0.95263 0.95618 1.02544 1.69723 1.43460 1.11736 1.31312 0.85254 0.79586 0.78453 0.77658 1.19272 1.19262 1.18689 1.20274 1.08210 0.91286 0.99207 0.92080 0.85294 0.92199 0.85600 0.85842 0.91406 0.91042 0.91150 0.91588 0.87211 0.86589 0.75093 0.89772 0.91564 0.83296 0.83848 0.87255 0.90586 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.37 -5.02 10.57 -51.41 -0.54 -5.56 16 3 C 0.46 6.95 7.96 71.23 0.57 7.51 16 4 O -0.54 -11.74 15.73 21.95 0.35 -11.39 16 5 C -0.11 -1.02 5.81 29.84 0.17 -0.84 16 6 C -0.10 -1.11 4.50 30.59 0.14 -0.97 16 7 C -0.10 -1.19 4.50 30.59 0.14 -1.05 16 8 C -0.14 -1.72 5.70 29.85 0.17 -1.55 16 9 C 0.51 10.41 7.83 87.66 0.69 11.10 16 10 O -0.58 -16.51 15.98 -3.04 -0.05 -16.56 16 11 N -0.72 -14.19 5.55 -466.79 -2.59 -16.78 16 12 C 0.17 4.05 5.80 85.63 0.50 4.55 16 13 C -0.06 -1.71 5.25 -19.88 -0.10 -1.81 16 14 C -0.16 -4.17 9.70 22.30 0.22 -3.96 16 15 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16 16 C -0.23 -9.42 9.17 22.39 0.21 -9.21 16 17 C 0.12 5.29 6.65 22.58 0.15 5.44 16 18 O -0.25 -12.97 8.59 -22.74 -0.20 -13.17 16 19 C -0.40 -23.00 9.95 67.92 0.68 -22.32 16 20 H 0.08 4.97 5.44 -2.91 -0.02 4.95 16 21 C 0.01 0.68 5.49 84.83 0.47 1.15 16 22 N -0.92 -54.31 13.96 21.61 0.30 -54.01 16 23 Si 0.97 44.87 28.62 68.60 1.96 46.83 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.17 -6.09 9.65 22.39 0.22 -5.88 16 28 H 0.06 0.58 8.13 -2.39 -0.02 0.56 16 29 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.13 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.83 8.10 -2.38 -0.02 0.81 16 34 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16 35 H 0.07 0.93 8.10 -2.38 -0.02 0.91 16 36 H 0.07 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 39 H 0.41 6.80 8.46 -92.71 -0.78 6.01 16 40 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 41 H 0.07 1.69 8.09 -2.39 -0.02 1.67 16 42 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 44 H 0.11 5.01 5.64 -2.91 -0.02 4.99 16 45 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.12 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -74.64 396.43 5.06 -69.58 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.21 Total: 19.51 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 5.61 Total: -18.46 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: -2.29 Total: -70.78 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.44 Total: -46.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.96 Total: 46.83 kcal Total: -74.64 5.06 -69.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116942585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.583 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds