Wall clock time and date at job start Tue Mar 31 2020 19:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99737 * 2 1 4 4 O 1.20825 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99784 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.42900 * 114.00022 * 179.97438 * 6 5 3 8 8 H 1.09001 * 110.27261 * 332.08796 * 7 6 5 9 9 C 1.54591 * 110.39327 * 94.23130 * 7 6 5 10 10 C 1.54940 * 102.92271 * 140.91362 * 9 7 6 11 11 N 1.48530 * 103.22463 * 322.59067 * 10 9 7 12 12 C 1.46903 * 110.99866 * 159.71693 * 11 10 9 13 13 C 1.50696 * 109.47151 * 52.60251 * 12 11 10 14 14 C 1.38302 * 119.93469 * 89.99796 * 13 12 11 15 15 C 1.38094 * 120.07461 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.27306 * 15 14 13 17 17 O 1.35748 * 120.07147 * 179.72501 * 16 15 14 18 18 C 1.34830 * 117.00101 * 354.46447 * 17 16 15 19 19 H 1.07999 * 119.99626 * 5.05831 * 18 17 16 20 20 C 1.38650 * 120.00326 * 185.05731 * 18 17 16 21 21 N 1.31558 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47371 * 60.00005 * 22 20 18 24 24 H 1.48501 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47391 * 299.99818 * 22 20 18 26 26 C 1.38878 * 119.86109 * 359.47415 * 16 15 14 27 27 C 1.38104 * 119.93072 * 0.53047 * 26 16 15 28 28 C 1.47897 * 105.82533 * 39.20450 * 11 10 9 29 29 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47715 * 300.00692 * 1 2 3 31 31 H 1.09008 * 109.47245 * 60.00393 * 1 2 3 32 32 H 1.08999 * 109.47244 * 59.99304 * 5 3 2 33 33 H 1.09008 * 109.46556 * 299.99257 * 5 3 2 34 34 H 1.09001 * 110.72798 * 259.27711 * 9 7 6 35 35 H 1.09003 * 110.72401 * 22.55948 * 9 7 6 36 36 H 1.08997 * 110.66807 * 204.15188 * 10 9 7 37 37 H 1.08994 * 110.66131 * 81.01948 * 10 9 7 38 38 H 1.08993 * 109.47415 * 292.59895 * 12 11 10 39 39 H 1.09004 * 109.46775 * 172.59989 * 12 11 10 40 40 H 1.08002 * 119.96329 * 0.02562 * 14 13 12 41 41 H 1.08000 * 120.04048 * 180.02562 * 15 14 13 42 42 H 0.97006 * 120.00005 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03575 * 180.25499 * 26 16 15 44 44 H 1.07996 * 119.96455 * 179.74788 * 27 26 16 45 45 H 1.08998 * 109.92358 * 94.01958 * 28 11 10 46 46 H 1.09004 * 109.92128 * 215.12347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 -0.0011 7 6 5.3882 2.8325 -0.0011 8 1 5.8809 1.9864 0.4779 9 6 5.9083 3.0086 -1.4462 10 6 6.9936 4.1037 -1.2928 11 7 6.4142 5.0160 -0.2740 12 6 7.4595 5.8341 0.3553 13 6 8.2695 6.5227 -0.7127 14 6 7.8898 7.7719 -1.1691 15 6 8.6296 8.4053 -2.1480 16 6 9.7528 7.7842 -2.6785 17 8 10.4790 8.4018 -3.6449 18 6 9.9934 9.5635 -4.1272 19 1 9.1104 10.0035 -3.6879 20 6 10.6277 10.1933 -5.1871 21 7 11.7037 9.6577 -5.7219 22 14 9.9554 11.8032 -5.8547 23 1 9.9569 12.8251 -4.7772 24 1 10.8081 12.2679 -6.9781 25 1 8.5669 11.5968 -6.3391 26 6 10.1345 6.5321 -2.2145 27 6 9.3904 5.9038 -1.2353 28 6 5.7541 4.1428 0.7205 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3634 0.5138 -0.8901 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7807 0.8893 34 1 6.3459 2.0807 -1.8144 35 1 5.1089 3.3475 -2.1052 36 1 7.1471 4.6279 -2.2360 37 1 7.9281 3.6715 -0.9351 38 1 8.1117 5.1953 0.9507 39 1 6.9969 6.5821 0.9994 40 1 7.0137 8.2525 -0.7593 41 1 8.3329 9.3809 -2.5037 42 1 12.1477 10.0985 -6.4632 43 1 11.0099 6.0483 -2.6221 44 1 9.6845 4.9284 -0.8770 45 1 6.4375 3.9348 1.5439 46 1 4.8532 4.6258 1.0990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137123988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:40 Heat of formation + Delta-G solvation = -114.112125 kcal Electronic energy + Delta-G solvation = -27709.943842 eV Core-core repulsion = 23566.249084 eV Total energy + Delta-G solvation = -4143.694758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84942 -39.74957 -38.90927 -37.58260 -36.72800 -36.07073 -32.53982 -31.87257 -30.22022 -29.91776 -29.27176 -28.10689 -26.84959 -25.64647 -24.38714 -22.12486 -21.67195 -21.30825 -21.09392 -20.16222 -18.09825 -17.99052 -17.62040 -17.15133 -16.93834 -16.77916 -15.98864 -15.42216 -15.01700 -14.84139 -14.55534 -14.41564 -13.98343 -13.90782 -13.62767 -13.53376 -13.47182 -13.23048 -12.74022 -12.61534 -12.50913 -12.37337 -12.27880 -11.84620 -11.74483 -11.58185 -11.32625 -11.24469 -11.20094 -10.97108 -10.74647 -10.72949 -10.63203 -10.51306 -10.41941 -9.98846 -9.32317 -8.82696 -8.34774 -8.16283 -7.17058 -6.44523 -4.03250 1.78090 1.90521 2.21959 2.29244 3.14404 3.15519 3.18159 3.49883 3.97580 4.02168 4.28325 4.39015 4.50443 4.62692 4.66016 4.67383 4.68091 4.76944 4.80643 5.08340 5.09426 5.18546 5.18982 5.26625 5.34382 5.42802 5.48431 5.64758 5.69159 5.74938 5.81453 5.89449 5.90171 6.01052 6.11558 6.21813 6.43479 6.68372 6.70581 6.87035 6.95920 7.03788 7.11710 7.25825 7.35271 7.42155 7.45583 7.83117 8.00647 9.01227 9.70911 10.73328 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.001822 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.238194 B =15361.082789 C =15918.170482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.459 3.541 4 O -0.482 6.482 5 C 0.071 3.929 6 O -0.353 6.353 7 C 0.082 3.918 8 H 0.072 0.928 9 C -0.149 4.149 10 C 0.043 3.957 11 N -0.507 5.507 12 C 0.105 3.895 13 C -0.186 4.186 14 C -0.048 4.048 15 C -0.235 4.235 16 C 0.156 3.844 17 O -0.178 6.178 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.194 4.194 27 C -0.068 4.068 28 C 0.037 3.963 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.126 0.874 42 H 0.270 0.730 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 -19.533 12.873 28.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.278 6.278 3 C 0.300 3.700 4 O -0.367 6.367 5 C -0.007 4.007 6 O -0.272 6.272 7 C 0.024 3.976 8 H 0.090 0.910 9 C -0.187 4.187 10 C -0.085 4.085 11 N -0.232 5.232 12 C -0.022 4.022 13 C -0.187 4.187 14 C -0.067 4.067 15 C -0.255 4.255 16 C 0.102 3.898 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.213 4.213 27 C -0.086 4.086 28 C -0.091 4.091 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.144 0.856 42 H 0.080 0.920 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.071 0.929 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.762 -18.690 12.345 27.389 hybrid contribution 0.196 0.137 0.011 0.240 sum -15.566 -18.552 12.356 27.188 Atomic orbital electron populations 1.23305 0.75594 1.03873 1.02872 1.86449 1.23924 1.32924 1.84552 1.23300 0.91514 0.81718 0.73484 1.90730 1.66686 1.36189 1.43062 1.21693 0.88243 0.86642 1.04117 1.88081 1.22688 1.21283 1.95139 1.23125 0.79953 0.97997 0.96557 0.91018 1.23095 0.99741 0.99257 0.96653 1.23156 0.95009 0.92494 0.97805 1.64944 1.27313 1.19700 1.11236 1.20996 0.91004 0.95852 0.94335 1.19055 0.98929 0.97044 1.03688 1.20586 0.97238 0.93834 0.95044 1.21167 0.99174 1.02564 1.02554 1.19398 0.89972 0.91383 0.89042 1.83972 1.43759 1.34979 1.45389 1.21288 1.12822 0.97031 1.15656 0.89076 1.25285 0.95929 0.99629 0.95635 1.70031 1.17635 1.38863 1.23259 0.85786 0.78792 0.80205 0.78692 1.19499 1.20291 1.19461 1.20153 1.03446 0.94972 1.02768 1.20475 0.94459 0.97908 0.95799 1.22938 1.00223 0.91921 0.94036 0.87810 0.91711 0.91645 0.88804 0.88888 0.90809 0.89400 0.89019 0.93541 0.94750 0.90557 0.87380 0.85586 0.91987 0.86650 0.87597 0.92864 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.85 10.57 -39.26 -0.41 -3.26 16 3 C 0.46 4.48 8.03 36.01 0.29 4.77 16 4 O -0.48 -6.61 16.25 -25.48 -0.41 -7.03 16 5 C 0.07 0.52 6.37 36.01 0.23 0.75 16 6 O -0.35 -3.84 9.48 -55.18 -0.52 -4.36 16 7 C 0.08 0.76 3.47 -25.38 -0.09 0.67 16 8 H 0.07 0.48 7.81 -51.93 -0.41 0.07 16 9 C -0.15 -1.51 6.80 -24.87 -0.17 -1.68 16 10 C 0.04 0.53 4.97 -1.90 -0.01 0.52 16 11 N -0.51 -6.71 5.39 -231.90 -1.25 -7.96 16 12 C 0.11 1.42 5.18 -4.98 -0.03 1.40 16 13 C -0.19 -3.12 4.60 -104.58 -0.48 -3.60 16 14 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 15 C -0.24 -5.14 9.17 -39.40 -0.36 -5.50 16 16 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 17 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 18 C -0.39 -10.99 9.49 30.88 0.29 -10.69 16 19 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.32 13.67 55.48 0.76 -24.56 16 22 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.19 -4.04 9.99 -39.39 -0.39 -4.43 16 27 C -0.07 -1.17 8.33 -39.61 -0.33 -1.50 16 28 C 0.04 0.40 6.51 -2.76 -0.02 0.38 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.13 -51.92 -0.42 -0.04 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.43 8.10 -51.92 -0.42 0.01 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.09 1.35 7.73 -51.93 -0.40 0.95 16 37 H 0.05 0.53 7.08 -51.93 -0.37 0.17 16 38 H 0.03 0.42 7.75 -51.93 -0.40 0.02 16 39 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.12 2.32 8.06 -52.48 -0.42 1.90 16 44 H 0.11 1.52 7.38 -52.49 -0.39 1.14 16 45 H 0.05 0.49 7.57 -51.93 -0.39 0.09 16 46 H 0.09 1.08 7.97 -51.93 -0.41 0.67 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -33.93 384.81 -8.50 -42.43 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.69 Total: 2.83 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.74 Total: -14.42 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: -0.49 Total: -32.53 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.35 Total: -19.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.93 -8.50 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.681 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds