Wall clock time and date at job start Tue Mar 31 2020 19:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99737 * 2 1 4 4 O 1.20825 * 119.99899 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99784 * 180.02562 * 3 2 1 6 6 O 1.42903 * 109.47185 * 179.97438 * 5 3 2 7 7 C 1.42900 * 114.00022 * 179.97438 * 6 5 3 8 8 H 1.09001 * 110.27261 * 332.08796 * 7 6 5 9 9 C 1.54591 * 110.39327 * 94.23130 * 7 6 5 10 10 C 1.54940 * 102.92271 * 140.91362 * 9 7 6 11 11 N 1.48530 * 103.22463 * 322.59067 * 10 9 7 12 12 C 1.46903 * 110.99866 * 159.71693 * 11 10 9 13 13 C 1.50696 * 109.47151 * 52.60251 * 12 11 10 14 14 C 1.38302 * 119.93469 * 89.99796 * 13 12 11 15 15 C 1.38094 * 120.07461 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.27306 * 15 14 13 17 17 O 1.35748 * 120.07147 * 179.72501 * 16 15 14 18 18 C 1.34830 * 117.00101 * 354.46447 * 17 16 15 19 19 H 1.07999 * 119.99626 * 5.05831 * 18 17 16 20 20 C 1.38650 * 120.00326 * 185.05731 * 18 17 16 21 21 N 1.31558 * 120.00083 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47371 * 60.00005 * 22 20 18 24 24 H 1.48501 * 109.47086 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47391 * 299.99818 * 22 20 18 26 26 C 1.38878 * 119.86109 * 359.47415 * 16 15 14 27 27 C 1.38104 * 119.93072 * 0.53047 * 26 16 15 28 28 C 1.47897 * 105.82533 * 39.20450 * 11 10 9 29 29 H 1.09000 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47715 * 300.00692 * 1 2 3 31 31 H 1.09008 * 109.47245 * 60.00393 * 1 2 3 32 32 H 1.08999 * 109.47244 * 59.99304 * 5 3 2 33 33 H 1.09008 * 109.46556 * 299.99257 * 5 3 2 34 34 H 1.09001 * 110.72798 * 259.27711 * 9 7 6 35 35 H 1.09003 * 110.72401 * 22.55948 * 9 7 6 36 36 H 1.08997 * 110.66807 * 204.15188 * 10 9 7 37 37 H 1.08994 * 110.66131 * 81.01948 * 10 9 7 38 38 H 1.08993 * 109.47415 * 292.59895 * 12 11 10 39 39 H 1.09004 * 109.46775 * 172.59989 * 12 11 10 40 40 H 1.08002 * 119.96329 * 0.02562 * 14 13 12 41 41 H 1.08000 * 120.04048 * 180.02562 * 15 14 13 42 42 H 0.97006 * 120.00005 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.03575 * 180.25499 * 26 16 15 44 44 H 1.07996 * 119.96455 * 179.74788 * 27 26 16 45 45 H 1.08998 * 109.92358 * 94.01958 * 28 11 10 46 46 H 1.09004 * 109.92128 * 215.12347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 8 3.9715 2.6453 -0.0011 7 6 5.3882 2.8325 -0.0011 8 1 5.8809 1.9864 0.4779 9 6 5.9083 3.0086 -1.4462 10 6 6.9936 4.1037 -1.2928 11 7 6.4142 5.0160 -0.2740 12 6 7.4595 5.8341 0.3553 13 6 8.2695 6.5227 -0.7127 14 6 7.8898 7.7719 -1.1691 15 6 8.6296 8.4053 -2.1480 16 6 9.7528 7.7842 -2.6785 17 8 10.4790 8.4018 -3.6449 18 6 9.9934 9.5635 -4.1272 19 1 9.1104 10.0035 -3.6879 20 6 10.6277 10.1933 -5.1871 21 7 11.7037 9.6577 -5.7219 22 14 9.9554 11.8032 -5.8547 23 1 9.9569 12.8251 -4.7772 24 1 10.8081 12.2679 -6.9781 25 1 8.5669 11.5968 -6.3391 26 6 10.1345 6.5321 -2.2145 27 6 9.3904 5.9038 -1.2353 28 6 5.7541 4.1428 0.7205 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3634 0.5138 -0.8901 32 1 3.9557 0.7809 -0.8907 33 1 3.9563 0.7807 0.8893 34 1 6.3459 2.0807 -1.8144 35 1 5.1089 3.3475 -2.1052 36 1 7.1471 4.6279 -2.2360 37 1 7.9281 3.6715 -0.9351 38 1 8.1117 5.1953 0.9507 39 1 6.9969 6.5821 0.9994 40 1 7.0137 8.2525 -0.7593 41 1 8.3329 9.3809 -2.5037 42 1 12.1477 10.0985 -6.4632 43 1 11.0099 6.0483 -2.6221 44 1 9.6845 4.9284 -0.8770 45 1 6.4375 3.9348 1.5439 46 1 4.8532 4.6258 1.0990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137123988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:39 Heat of formation + Delta-G solvation = -137.192493 kcal Electronic energy + Delta-G solvation = -27710.944682 eV Core-core repulsion = 23566.249084 eV Total energy + Delta-G solvation = -4144.695598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54905 -40.97358 -40.22833 -38.71175 -37.74119 -37.18757 -34.37166 -33.14217 -31.80138 -30.61599 -30.45768 -28.96033 -27.58969 -27.34981 -25.72585 -23.68559 -22.65412 -22.27799 -21.84479 -21.47098 -19.84509 -18.83722 -18.78192 -18.27797 -17.79421 -17.48235 -16.91181 -16.48655 -16.34474 -16.25266 -15.87092 -15.50032 -15.30426 -15.20165 -15.01510 -14.78944 -14.39953 -14.24752 -14.14174 -13.77821 -13.60076 -13.39207 -13.25591 -12.96935 -12.91369 -12.68511 -12.55772 -12.44407 -12.36688 -12.18235 -12.05472 -11.93979 -11.85875 -11.63180 -11.47566 -11.16796 -10.78865 -10.66210 -9.75821 -9.32221 -8.86892 -8.47192 -6.15118 0.61210 0.68033 1.08224 1.34419 1.34612 1.44870 1.50311 2.17692 2.75397 2.90128 3.07553 3.32825 3.52796 3.62215 3.69985 3.78514 4.04635 4.06348 4.14329 4.20085 4.20428 4.24259 4.29808 4.32413 4.34255 4.46965 4.55972 4.59882 4.67828 4.70126 4.75946 4.83767 4.87921 4.92932 5.07281 5.10015 5.15528 5.20530 5.27851 5.31351 5.56269 5.72603 5.81542 5.97419 6.03068 6.09746 6.15943 6.25311 6.68423 6.97624 7.78263 8.75613 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.020778 B = 0.001822 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.238194 B =15361.082789 C =15918.170482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.458 3.542 4 O -0.533 6.533 5 C 0.068 3.932 6 O -0.385 6.385 7 C 0.087 3.913 8 H 0.111 0.889 9 C -0.145 4.145 10 C 0.040 3.960 11 N -0.530 5.530 12 C 0.108 3.892 13 C -0.158 4.158 14 C -0.053 4.053 15 C -0.246 4.246 16 C 0.114 3.886 17 O -0.232 6.232 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.022 4.022 21 N -0.919 5.919 22 Si 1.017 2.983 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.260 1.260 26 C -0.203 4.203 27 C -0.054 4.054 28 C 0.036 3.964 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.129 0.871 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.273 0.727 43 H 0.115 0.885 44 H 0.148 0.852 45 H 0.079 0.921 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.781 -22.086 15.362 31.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.302 3.698 4 O -0.422 6.422 5 C -0.009 4.009 6 O -0.305 6.305 7 C 0.029 3.971 8 H 0.129 0.871 9 C -0.183 4.183 10 C -0.087 4.087 11 N -0.256 5.256 12 C -0.019 4.019 13 C -0.159 4.159 14 C -0.072 4.072 15 C -0.265 4.265 16 C 0.064 3.936 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.116 0.884 20 C -0.219 4.219 21 N -0.557 5.557 22 Si 0.836 3.164 23 H -0.182 1.182 24 H -0.194 1.194 25 H -0.184 1.184 26 C -0.222 4.222 27 C -0.073 4.073 28 C -0.091 4.091 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.147 0.853 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.166 0.834 45 H 0.097 0.903 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.165 -21.302 14.885 31.144 hybrid contribution 0.416 0.629 -0.496 0.903 sum -16.749 -20.672 14.388 30.247 Atomic orbital electron populations 1.23569 0.74471 1.05918 1.02437 1.86456 1.25105 1.31972 1.83919 1.23939 0.92634 0.81371 0.71868 1.90711 1.67941 1.37808 1.45731 1.22007 0.86422 0.85551 1.06913 1.88045 1.23562 1.23546 1.95325 1.23161 0.79659 0.98574 0.95681 0.87105 1.23060 0.98405 0.99539 0.97277 1.23124 0.96609 0.92805 0.96212 1.64825 1.27263 1.21084 1.12403 1.21019 0.91303 0.96537 0.93077 1.19571 0.98025 0.95829 1.02452 1.20894 0.97468 0.94704 0.94136 1.21236 0.99199 1.02458 1.03586 1.19955 0.91299 0.92957 0.89422 1.83932 1.45973 1.36015 1.47960 1.21751 1.13378 0.97568 1.16345 0.88376 1.26552 0.96133 1.03620 0.95612 1.70173 1.19742 1.41232 1.24586 0.84678 0.78342 0.75174 0.78218 1.18190 1.19437 1.18402 1.20438 1.04024 0.94115 1.03607 1.20876 0.93466 0.99030 0.93908 1.22966 0.99875 0.92130 0.94153 0.84509 0.92028 0.92315 0.86293 0.85334 0.88072 0.91822 0.92311 0.91832 0.92033 0.89676 0.85092 0.86762 0.91838 0.86738 0.83420 0.90342 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -4.95 10.57 -51.43 -0.54 -5.49 16 3 C 0.46 8.24 8.03 71.24 0.57 8.81 16 4 O -0.53 -14.58 16.25 28.40 0.46 -14.12 16 5 C 0.07 0.77 6.37 71.24 0.45 1.23 16 6 O -0.39 -7.32 9.48 -129.90 -1.23 -8.55 16 7 C 0.09 1.26 3.47 31.47 0.11 1.36 16 8 H 0.11 0.77 7.81 -2.39 -0.02 0.75 16 9 C -0.14 -2.47 6.80 31.80 0.22 -2.26 16 10 C 0.04 0.87 4.97 86.65 0.43 1.30 16 11 N -0.53 -12.32 5.39 -887.60 -4.78 -17.10 16 12 C 0.11 2.47 5.18 85.56 0.44 2.91 16 13 C -0.16 -4.88 4.60 -19.84 -0.09 -4.97 16 14 C -0.05 -1.93 9.69 22.25 0.22 -1.72 16 15 C -0.25 -11.06 9.17 22.39 0.21 -10.85 16 16 C 0.11 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -14.19 9.76 -22.72 -0.22 -14.41 16 18 C -0.41 -24.62 9.49 67.92 0.64 -23.97 16 19 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 20 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 21 N -0.92 -56.93 13.67 21.61 0.30 -56.64 16 22 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.20 -8.51 9.99 22.39 0.22 -8.28 16 27 C -0.05 -1.74 8.33 22.25 0.19 -1.56 16 28 C 0.04 0.64 6.51 86.45 0.56 1.20 16 29 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.13 -2.38 -0.02 0.63 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.13 0.56 8.10 -2.38 -0.02 0.54 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.40 8.09 -2.39 -0.02 1.38 16 36 H 0.06 1.66 7.73 -2.39 -0.02 1.64 16 37 H 0.06 1.16 7.08 -2.39 -0.02 1.14 16 38 H 0.06 1.13 7.75 -2.39 -0.02 1.12 16 39 H 0.08 1.86 8.08 -2.38 -0.02 1.84 16 40 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 41 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 42 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.15 3.54 7.38 -2.91 -0.02 3.52 16 45 H 0.08 1.00 7.57 -2.39 -0.02 0.99 16 46 H 0.08 1.61 7.97 -2.38 -0.02 1.60 16 Total: -1.00 -81.52 384.81 2.97 -78.55 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.99 Total: 22.22 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.98 Total: -30.19 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -4.49 Total: -73.74 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -1.53 Total: -42.57 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -81.52 2.97 -78.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137123988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.645 kcal (2) G-P(sol) polarization free energy of solvation -81.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds