Wall clock time and date at job start Tue Mar 31 2020 18:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34709 * 117.00100 * 2 1 4 4 O 1.21473 * 120.00325 * 0.02562 * 3 2 1 5 5 C 1.47755 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.39594 * 120.09388 * 6.01264 * 5 3 2 7 7 C 1.38479 * 119.89474 * 180.26727 * 6 5 3 8 8 O 1.35916 * 119.94414 * 179.72548 * 7 6 5 9 9 C 1.42901 * 116.99288 * 179.72689 * 8 7 6 10 10 C 1.38751 * 120.10326 * 359.45814 * 7 6 5 11 11 C 1.38723 * 120.19609 * 0.27012 * 10 7 6 12 12 O 1.35910 * 119.94665 * 179.97438 * 11 10 7 13 13 C 1.42896 * 117.00589 * 359.97438 * 12 11 10 14 14 C 1.38515 * 120.09979 * 0.02562 * 11 10 7 15 15 C 1.50694 * 120.05369 * 179.97438 * 14 11 10 16 16 N 1.46906 * 109.47336 * 97.71281 * 15 14 11 17 17 C 1.47473 * 111.00031 * 265.97673 * 16 15 14 18 18 C 1.53516 * 87.93229 * 221.29142 * 17 16 15 19 19 C 1.50698 * 114.34263 * 139.68145 * 18 17 16 20 20 H 1.07999 * 120.00541 * 266.07755 * 19 18 17 21 21 C 1.37881 * 119.99772 * 86.07981 * 19 18 17 22 22 N 1.31515 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47293 * 90.00388 * 23 21 19 25 25 H 1.48511 * 109.47131 * 210.00175 * 23 21 19 26 26 H 1.48504 * 109.47318 * 329.99692 * 23 21 19 27 27 C 1.47476 * 110.99990 * 170.00373 * 16 15 14 28 28 H 1.08992 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46611 * 299.99605 * 1 2 3 30 30 H 1.08993 * 109.47073 * 59.99218 * 1 2 3 31 31 H 1.07992 * 120.05086 * 359.97438 * 6 5 3 32 32 H 1.08999 * 109.47623 * 300.00189 * 9 8 7 33 33 H 1.09007 * 109.47218 * 60.00747 * 9 8 7 34 34 H 1.09004 * 109.46761 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.90761 * 180.29458 * 10 7 6 36 36 H 1.09001 * 109.47026 * 300.00831 * 13 12 11 37 37 H 1.08996 * 109.46473 * 60.00068 * 13 12 11 38 38 H 1.08994 * 109.47337 * 179.97438 * 13 12 11 39 39 H 1.08995 * 109.47675 * 217.71843 * 15 14 11 40 40 H 1.08999 * 109.46892 * 337.71924 * 15 14 11 41 41 H 1.08996 * 113.47899 * 336.06106 * 17 16 15 42 42 H 1.09005 * 113.47863 * 106.52687 * 17 16 15 43 43 H 1.08996 * 114.17015 * 272.38326 * 18 17 16 44 44 H 0.96998 * 119.99642 * 179.97438 * 22 21 19 45 45 H 1.09005 * 113.47364 * 253.47388 * 27 16 15 46 46 H 1.08995 * 113.48142 * 23.94135 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3009 0.1148 -0.1276 7 6 5.6836 0.1915 -0.1221 8 8 6.4264 -0.9406 -0.2401 9 6 7.8472 -0.7879 -0.2329 10 6 6.3118 1.4228 -0.0018 11 6 5.5587 2.5815 0.1190 12 8 6.1793 3.7849 0.2370 13 6 7.6082 3.7815 0.2297 14 6 4.1752 2.5138 0.1206 15 6 3.3581 3.7731 0.2525 16 7 2.9280 4.2196 -1.0794 17 6 3.8701 5.2088 -1.6349 18 6 2.6553 5.9977 -2.1433 19 6 2.7776 7.4921 -1.9923 20 1 2.3745 7.9814 -1.1180 21 6 3.4042 8.2348 -2.9705 22 7 3.8946 7.6391 -4.0355 23 14 3.5552 10.0873 -2.7837 24 1 4.8197 10.4121 -2.0762 25 1 3.5625 10.7213 -4.1267 26 1 2.4032 10.6014 -2.0001 27 6 1.9351 5.3052 -0.9778 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.8128 -0.8435 -0.2253 32 1 8.1485 -0.1517 -1.0651 33 1 8.1586 -0.3298 0.7059 34 1 8.3182 -1.7656 -0.3343 35 1 7.3903 1.4794 -0.0026 36 1 7.9744 3.1801 1.0618 37 1 7.9656 3.3585 -0.7091 38 1 7.9745 4.8031 0.3302 39 1 2.4819 3.5748 0.8697 40 1 3.9624 4.5511 0.7188 41 1 4.4436 5.7375 -0.8735 42 1 4.4955 4.8117 -2.4345 43 1 2.3053 5.6919 -3.1291 44 1 4.3350 8.1617 -4.7238 45 1 0.9203 4.9896 -1.2204 46 1 1.9921 5.8596 -0.0411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141697816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:10 Heat of formation + Delta-G solvation = -78.147745 kcal Electronic energy + Delta-G solvation = -29931.463427 eV Core-core repulsion = 25789.328201 eV Total energy + Delta-G solvation = -4142.135226 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98480 -39.93837 -39.05297 -38.45261 -36.82084 -36.02018 -32.76216 -31.58146 -30.89217 -28.77794 -28.11512 -27.52806 -26.71481 -25.21295 -24.50121 -23.69976 -22.64246 -21.29893 -20.48266 -18.92285 -18.39874 -17.39650 -16.91742 -16.57653 -16.31820 -16.24679 -16.00900 -15.81586 -15.58629 -15.32520 -14.82079 -14.64693 -14.17251 -14.00333 -13.67715 -13.46659 -13.17230 -12.94724 -12.60775 -12.56758 -12.15805 -12.00105 -11.87391 -11.66249 -11.59315 -11.46921 -11.27903 -11.02075 -10.84943 -10.68737 -10.67259 -10.55564 -10.31088 -9.62608 -9.57018 -9.13343 -8.80924 -8.74951 -8.33096 -7.89981 -7.69462 -5.95440 -3.98703 0.67897 1.40116 2.62112 2.66574 3.06613 3.33569 3.35314 3.40185 3.44103 3.71731 4.47965 4.58906 4.68572 4.81841 4.88670 4.96185 4.97915 5.07504 5.12097 5.13790 5.15010 5.19860 5.22661 5.34498 5.39857 5.45099 5.51115 5.58386 5.87384 5.99324 6.07020 6.22146 6.28449 6.32110 6.49894 6.55211 6.65362 6.77971 6.93420 6.97030 7.03777 7.33392 7.37544 7.49593 7.85623 7.94868 8.05142 8.32885 8.51973 9.04320 9.64970 11.14231 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003841 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.945912 B = 7287.897534 C = 9229.564339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.360 6.360 3 C 0.504 3.496 4 O -0.462 6.462 5 C -0.038 4.038 6 C -0.137 4.137 7 C 0.144 3.856 8 O -0.313 6.313 9 C 0.026 3.974 10 C -0.266 4.266 11 C 0.164 3.836 12 O -0.296 6.296 13 C 0.027 3.973 14 C -0.061 4.061 15 C 0.061 3.939 16 N -0.464 5.464 17 C 0.010 3.990 18 C 0.037 3.963 19 C -0.511 4.511 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.888 5.888 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.007 3.993 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 -18.384 10.398 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.347 3.653 4 O -0.348 6.348 5 C -0.039 4.039 6 C -0.156 4.156 7 C 0.099 3.901 8 O -0.226 6.226 9 C -0.069 4.069 10 C -0.286 4.286 11 C 0.117 3.883 12 O -0.209 6.209 13 C -0.068 4.068 14 C -0.063 4.063 15 C -0.067 4.067 16 N -0.186 5.186 17 C -0.119 4.119 18 C 0.018 3.982 19 C -0.549 4.549 20 H 0.075 0.925 21 C -0.136 4.136 22 N -0.525 5.525 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.122 4.122 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.119 0.881 35 H 0.155 0.845 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.717 -18.672 9.892 21.890 hybrid contribution 0.941 1.675 0.519 1.990 sum 6.657 -16.997 10.411 21.014 Atomic orbital electron populations 1.23228 0.76167 1.03334 1.02776 1.86522 1.23355 1.32934 1.84927 1.20881 0.88652 0.81559 0.74179 1.90908 1.66209 1.34950 1.42684 1.18292 0.89225 0.92494 1.03933 1.20439 0.90291 0.98915 1.05930 1.18436 0.90804 0.84694 0.96215 1.86084 1.18931 1.29393 1.88216 1.23065 0.78577 1.03859 1.01364 1.21418 1.00655 0.92086 1.14421 1.18308 0.91129 0.84211 0.94627 1.86231 1.21070 1.26329 1.87233 1.23093 0.78481 1.04316 1.00929 1.19176 0.90343 0.95117 1.01651 1.21599 0.97724 0.92254 0.95118 1.68834 1.08241 1.25857 1.15662 1.24063 0.97398 0.92131 0.98281 1.20120 0.90718 0.93695 0.93629 1.21064 1.36974 0.91602 1.05284 0.92533 1.25006 0.95383 0.98190 0.95039 1.69985 1.38004 1.35466 1.09084 0.86652 0.78426 0.85927 0.77314 1.20769 1.21251 1.19859 1.23854 0.96537 0.91635 1.00148 0.88337 0.91988 0.91620 0.83761 0.92576 0.92734 0.88117 0.84463 0.92985 0.92624 0.87798 0.89077 0.93305 0.92790 0.92639 0.92125 0.93070 0.92187 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.36 -4.84 9.83 -40.52 -0.40 -5.23 16 3 C 0.50 8.18 7.83 34.62 0.27 8.45 16 4 O -0.46 -8.63 12.58 -19.25 -0.24 -8.88 16 5 C -0.04 -0.60 5.87 -105.01 -0.62 -1.22 16 6 C -0.14 -1.89 9.55 -38.99 -0.37 -2.26 16 7 C 0.14 1.87 6.68 -39.30 -0.26 1.61 16 8 O -0.31 -3.53 10.49 -19.48 -0.20 -3.74 16 9 C 0.03 0.19 9.81 101.05 0.99 1.18 16 10 C -0.27 -3.42 8.02 -39.21 -0.31 -3.73 16 11 C 0.16 2.57 6.65 -39.30 -0.26 2.31 16 12 O -0.30 -4.64 9.41 -19.46 -0.18 -4.83 16 13 C 0.03 0.29 9.81 101.05 0.99 1.28 16 14 C -0.06 -1.07 5.51 -104.04 -0.57 -1.64 16 15 C 0.06 1.19 3.80 -4.98 -0.02 1.18 16 16 N -0.46 -10.43 5.60 -246.12 -1.38 -11.81 16 17 C 0.01 0.25 7.28 -7.56 -0.06 0.20 16 18 C 0.04 1.00 3.76 -91.24 -0.34 0.66 16 19 C -0.51 -14.50 8.83 -34.44 -0.30 -14.81 16 20 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 22 N -0.89 -26.37 13.26 55.43 0.74 -25.63 16 23 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.01 0.16 7.25 -7.55 -0.05 0.11 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.14 1.77 7.62 -52.49 -0.40 1.37 16 32 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 33 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.14 1.35 4.49 -52.49 -0.24 1.12 16 36 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 37 H 0.06 0.54 7.65 -51.93 -0.40 0.14 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.78 5.86 -51.93 -0.30 1.48 16 40 H 0.05 0.98 6.46 -51.93 -0.34 0.64 16 41 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 42 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.05 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -33.56 380.22 -7.50 -41.05 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.58 Total: 0.21 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 0.05 Total: -3.45 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.64 Total: -37.44 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -1.03 Total: -22.67 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.56 -7.50 -41.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141697816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.095 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds