Wall clock time and date at job start Tue Mar 31 2020 18:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34709 * 117.00100 * 2 1 4 4 O 1.21473 * 120.00325 * 0.02562 * 3 2 1 5 5 C 1.47755 * 120.00267 * 180.02562 * 3 2 1 6 6 C 1.39594 * 120.09388 * 6.01264 * 5 3 2 7 7 C 1.38479 * 119.89474 * 180.26727 * 6 5 3 8 8 O 1.35916 * 119.94414 * 179.72548 * 7 6 5 9 9 C 1.42901 * 116.99288 * 179.72689 * 8 7 6 10 10 C 1.38751 * 120.10326 * 359.45814 * 7 6 5 11 11 C 1.38723 * 120.19609 * 0.27012 * 10 7 6 12 12 O 1.35910 * 119.94665 * 179.97438 * 11 10 7 13 13 C 1.42896 * 117.00589 * 359.97438 * 12 11 10 14 14 C 1.38515 * 120.09979 * 0.02562 * 11 10 7 15 15 C 1.50694 * 120.05369 * 179.97438 * 14 11 10 16 16 N 1.46906 * 109.47336 * 97.71281 * 15 14 11 17 17 C 1.47473 * 111.00031 * 265.97673 * 16 15 14 18 18 C 1.53516 * 87.93229 * 221.29142 * 17 16 15 19 19 C 1.50698 * 114.34263 * 139.68145 * 18 17 16 20 20 H 1.07999 * 120.00541 * 266.07755 * 19 18 17 21 21 C 1.37881 * 119.99772 * 86.07981 * 19 18 17 22 22 N 1.31515 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99828 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47293 * 90.00388 * 23 21 19 25 25 H 1.48511 * 109.47131 * 210.00175 * 23 21 19 26 26 H 1.48504 * 109.47318 * 329.99692 * 23 21 19 27 27 C 1.47476 * 110.99990 * 170.00373 * 16 15 14 28 28 H 1.08992 * 109.46853 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46611 * 299.99605 * 1 2 3 30 30 H 1.08993 * 109.47073 * 59.99218 * 1 2 3 31 31 H 1.07992 * 120.05086 * 359.97438 * 6 5 3 32 32 H 1.08999 * 109.47623 * 300.00189 * 9 8 7 33 33 H 1.09007 * 109.47218 * 60.00747 * 9 8 7 34 34 H 1.09004 * 109.46761 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.90761 * 180.29458 * 10 7 6 36 36 H 1.09001 * 109.47026 * 300.00831 * 13 12 11 37 37 H 1.08996 * 109.46473 * 60.00068 * 13 12 11 38 38 H 1.08994 * 109.47337 * 179.97438 * 13 12 11 39 39 H 1.08995 * 109.47675 * 217.71843 * 15 14 11 40 40 H 1.08999 * 109.46892 * 337.71924 * 15 14 11 41 41 H 1.08996 * 113.47899 * 336.06106 * 17 16 15 42 42 H 1.09005 * 113.47863 * 106.52687 * 17 16 15 43 43 H 1.08996 * 114.17015 * 272.38326 * 18 17 16 44 44 H 0.96998 * 119.99642 * 179.97438 * 22 21 19 45 45 H 1.09005 * 113.47364 * 253.47388 * 27 16 15 46 46 H 1.08995 * 113.48142 * 23.94135 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 0.0005 5 6 3.5391 1.2776 -0.0006 6 6 4.3009 0.1148 -0.1276 7 6 5.6836 0.1915 -0.1221 8 8 6.4264 -0.9406 -0.2401 9 6 7.8472 -0.7879 -0.2329 10 6 6.3118 1.4228 -0.0018 11 6 5.5587 2.5815 0.1190 12 8 6.1793 3.7849 0.2370 13 6 7.6082 3.7815 0.2297 14 6 4.1752 2.5138 0.1206 15 6 3.3581 3.7731 0.2525 16 7 2.9280 4.2196 -1.0794 17 6 3.8701 5.2088 -1.6349 18 6 2.6553 5.9977 -2.1433 19 6 2.7776 7.4921 -1.9923 20 1 2.3745 7.9814 -1.1180 21 6 3.4042 8.2348 -2.9705 22 7 3.8946 7.6391 -4.0355 23 14 3.5552 10.0873 -2.7837 24 1 4.8197 10.4121 -2.0762 25 1 3.5625 10.7213 -4.1267 26 1 2.4032 10.6014 -2.0001 27 6 1.9351 5.3052 -0.9778 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.8128 -0.8435 -0.2253 32 1 8.1485 -0.1517 -1.0651 33 1 8.1586 -0.3298 0.7059 34 1 8.3182 -1.7656 -0.3343 35 1 7.3903 1.4794 -0.0026 36 1 7.9744 3.1801 1.0618 37 1 7.9656 3.3585 -0.7091 38 1 7.9745 4.8031 0.3302 39 1 2.4819 3.5748 0.8697 40 1 3.9624 4.5511 0.7188 41 1 4.4436 5.7375 -0.8735 42 1 4.4955 4.8117 -2.4345 43 1 2.3053 5.6919 -3.1291 44 1 4.3350 8.1617 -4.7238 45 1 0.9203 4.9896 -1.2204 46 1 1.9921 5.8596 -0.0411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141697816.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:09 Heat of formation + Delta-G solvation = -101.141061 kcal Electronic energy + Delta-G solvation = -29932.460492 eV Core-core repulsion = 25789.328201 eV Total energy + Delta-G solvation = -4143.132291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.13297 -41.04373 -40.50474 -39.79776 -37.93888 -37.18262 -34.79776 -33.04812 -31.97491 -30.15350 -29.11027 -28.46311 -27.84384 -26.78900 -26.46302 -24.90144 -24.14352 -22.60303 -21.66696 -20.42364 -19.93818 -18.65344 -18.50088 -17.91334 -17.44961 -17.30553 -16.99405 -16.88672 -16.76836 -16.59431 -16.39226 -15.97647 -15.70298 -15.64204 -15.15214 -14.62188 -14.33176 -14.14996 -13.85844 -13.59818 -13.48805 -13.35500 -13.27837 -13.05829 -12.90368 -12.80996 -12.50265 -12.44609 -12.34534 -12.22734 -12.19910 -11.72365 -11.67180 -11.51821 -11.14466 -11.05665 -10.83599 -10.48459 -9.86749 -9.60300 -9.01731 -8.13415 -6.25137 -0.46270 0.28254 1.42012 1.43109 1.48555 1.54337 1.57294 2.23268 2.35862 2.43187 2.57400 3.15009 3.47659 3.58155 3.75778 3.85638 3.89900 4.05198 4.21602 4.30050 4.30943 4.34654 4.37751 4.38557 4.39483 4.40336 4.46889 4.54656 4.68093 4.72666 4.74577 4.76832 4.80382 4.90204 4.91873 4.99658 5.04052 5.18996 5.24456 5.25314 5.42280 5.63154 5.65025 5.85761 6.13166 6.32013 6.39875 6.47082 6.75823 6.83082 7.42573 8.96670 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.003841 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.945912 B = 7287.897534 C = 9229.564339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.355 6.355 3 C 0.505 3.495 4 O -0.497 6.497 5 C -0.048 4.048 6 C -0.136 4.136 7 C 0.154 3.846 8 O -0.319 6.319 9 C 0.013 3.987 10 C -0.256 4.256 11 C 0.156 3.844 12 O -0.327 6.327 13 C 0.016 3.984 14 C -0.098 4.098 15 C 0.072 3.928 16 N -0.462 5.462 17 C 0.032 3.968 18 C 0.023 3.977 19 C -0.530 4.530 20 H 0.057 0.943 21 C 0.016 3.984 22 N -0.922 5.922 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.266 1.266 27 C 0.021 3.979 28 H 0.138 0.862 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.160 0.840 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.035 0.965 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.061 0.939 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 -19.688 11.408 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.349 3.651 4 O -0.386 6.386 5 C -0.050 4.050 6 C -0.154 4.154 7 C 0.108 3.892 8 O -0.232 6.232 9 C -0.081 4.081 10 C -0.275 4.275 11 C 0.109 3.891 12 O -0.241 6.241 13 C -0.078 4.078 14 C -0.100 4.100 15 C -0.055 4.055 16 N -0.184 5.184 17 C -0.098 4.098 18 C 0.004 3.996 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.184 4.184 22 N -0.561 5.561 23 Si 0.785 3.215 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.191 1.191 27 C -0.108 4.108 28 H 0.156 0.844 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.187 0.813 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.362 -20.014 10.917 23.957 hybrid contribution 0.501 1.890 0.209 1.966 sum 7.863 -18.124 11.126 22.673 Atomic orbital electron populations 1.23556 0.74310 1.05804 1.02454 1.86514 1.25131 1.31344 1.84217 1.21069 0.88935 0.81817 0.73267 1.90880 1.66939 1.36157 1.44589 1.18359 0.89326 0.92832 1.04465 1.20588 0.90934 0.98680 1.05242 1.18505 0.90795 0.85364 0.94571 1.86099 1.21083 1.28458 1.87593 1.23459 0.76222 1.05952 1.02493 1.21652 1.02085 0.90920 1.12859 1.18410 0.90769 0.85178 0.94743 1.86186 1.23694 1.26838 1.87339 1.23411 0.76126 1.05657 1.02615 1.19077 0.91276 0.94445 1.05181 1.21407 0.97841 0.93331 0.92967 1.68774 1.06979 1.24564 1.18040 1.23696 0.96448 0.92171 0.97437 1.20048 0.92732 0.93803 0.93045 1.21345 1.37324 0.92533 1.05639 0.92434 1.25845 0.94764 1.03249 0.94507 1.70117 1.38646 1.37444 1.09887 0.85525 0.78799 0.79644 0.77495 1.19789 1.20729 1.19066 1.23656 0.96661 0.91611 0.98871 0.84428 0.91792 0.92547 0.82243 0.91896 0.91182 0.85579 0.81288 0.90145 0.91678 0.87092 0.89333 0.94235 0.93352 0.94651 0.95610 0.92850 0.92023 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.29 9.83 -56.19 -0.55 -9.84 16 3 C 0.50 16.54 7.83 70.34 0.55 17.09 16 4 O -0.50 -19.15 12.58 19.92 0.25 -18.90 16 5 C -0.05 -1.53 5.87 -20.12 -0.12 -1.65 16 6 C -0.14 -3.56 9.55 22.65 0.22 -3.35 16 7 C 0.15 3.65 6.68 22.45 0.15 3.80 16 8 O -0.32 -6.18 10.49 -92.60 -0.97 -7.15 16 9 C 0.01 0.13 9.81 113.37 1.11 1.25 16 10 C -0.26 -6.00 8.02 22.51 0.18 -5.82 16 11 C 0.16 4.80 6.65 22.45 0.15 4.95 16 12 O -0.33 -10.19 9.41 -92.54 -0.87 -11.06 16 13 C 0.02 0.31 9.81 113.37 1.11 1.42 16 14 C -0.10 -3.47 5.51 -19.48 -0.11 -3.58 16 15 C 0.07 2.93 3.80 85.55 0.33 3.26 16 16 N -0.46 -21.58 5.60 -932.58 -5.22 -26.80 16 17 C 0.03 1.64 7.28 83.57 0.61 2.25 16 18 C 0.02 1.28 3.76 -11.19 -0.04 1.23 16 19 C -0.53 -30.84 8.83 25.60 0.23 -30.61 16 20 H 0.06 3.26 7.81 -2.91 -0.02 3.23 16 21 C 0.02 0.89 5.46 84.66 0.46 1.35 16 22 N -0.92 -56.03 13.26 21.45 0.28 -55.75 16 23 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.02 1.01 7.25 83.57 0.61 1.62 16 28 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.16 3.60 7.62 -2.91 -0.02 3.58 16 32 H 0.06 0.61 7.65 -2.39 -0.02 0.59 16 33 H 0.07 0.55 7.66 -2.38 -0.02 0.53 16 34 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.17 2.72 4.49 -2.91 -0.01 2.71 16 36 H 0.08 1.08 7.66 -2.39 -0.02 1.07 16 37 H 0.06 1.13 7.65 -2.39 -0.02 1.11 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 3.60 5.86 -2.39 -0.01 3.59 16 40 H 0.04 1.65 6.46 -2.39 -0.02 1.63 16 41 H 0.05 2.52 7.38 -2.39 -0.02 2.50 16 42 H 0.03 1.92 8.14 -2.38 -0.02 1.90 16 43 H 0.03 1.60 8.11 -2.39 -0.02 1.58 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.06 2.94 8.14 -2.38 -0.02 2.92 16 46 H 0.05 2.56 7.87 -2.39 -0.02 2.54 16 Total: -1.00 -74.94 380.22 2.57 -72.37 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.00 Total: 15.50 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 6.63 Total: -4.97 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -4.94 Total: -82.55 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -2.14 Total: -46.95 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.94 2.57 -72.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141697816.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.775 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds