Wall clock time and date at job start Tue Mar 31 2020 18:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35962 * 117.00128 * 2 1 4 4 C 1.39420 * 119.82020 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.57030 * 180.02562 * 4 3 2 6 6 C 1.38714 * 120.20320 * 359.97438 * 5 4 3 7 7 N 1.38854 * 120.18344 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99946 * 0.02562 * 7 6 5 9 9 H 1.09000 * 109.58427 * 35.17553 * 8 7 6 10 10 C 1.53124 * 109.52926 * 275.00346 * 8 7 6 11 11 O 1.42911 * 109.39147 * 297.41827 * 10 8 7 12 12 C 1.42902 * 114.15336 * 298.65173 * 11 10 8 13 13 C 1.53125 * 109.40320 * 61.34257 * 12 11 10 14 14 C 1.53067 * 109.12761 * 302.69706 * 13 12 11 15 15 O 1.43636 * 109.47663 * 296.53501 * 14 13 12 16 16 C 1.44813 * 104.77418 * 215.75183 * 15 14 13 17 17 C 1.54923 * 101.73291 * 35.99818 * 16 15 14 18 18 O 1.43234 * 109.73431 * 177.02460 * 14 13 12 19 19 C 1.41545 * 119.63907 * 0.27688 * 6 5 4 20 20 C 1.41020 * 120.27714 * 179.74732 * 19 6 5 21 21 H 1.07999 * 120.00507 * 25.46685 * 20 19 6 22 22 C 1.39909 * 119.99744 * 205.46823 * 20 19 6 23 23 N 1.30895 * 119.99909 * 15.18102 * 22 20 19 24 24 Si 1.86796 * 119.99757 * 195.18261 * 22 20 19 25 25 H 1.48498 * 109.47184 * 60.00198 * 24 22 20 26 26 H 1.48506 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47385 * 299.99835 * 24 22 20 28 28 C 1.37838 * 119.82465 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47480 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46954 * 300.00132 * 1 2 3 31 31 H 1.09003 * 109.47302 * 60.00186 * 1 2 3 32 32 H 1.08000 * 119.71282 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.89608 * 180.02562 * 5 4 3 34 34 H 0.96997 * 120.00647 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.48905 * 177.44311 * 10 8 7 36 36 H 1.09004 * 109.48682 * 57.39162 * 10 8 7 37 37 H 1.09005 * 109.47730 * 181.31780 * 12 11 10 38 38 H 1.09000 * 109.48140 * 301.35620 * 12 11 10 39 39 H 1.08998 * 109.52835 * 62.59278 * 13 12 11 40 40 H 1.08994 * 109.52655 * 182.79965 * 13 12 11 41 41 H 1.09001 * 110.97535 * 277.89034 * 16 15 14 42 42 H 1.09004 * 110.97275 * 154.10903 * 16 15 14 43 43 H 1.08995 * 110.69338 * 206.10822 * 17 16 15 44 44 H 1.08998 * 110.83928 * 82.98247 * 17 16 15 45 45 H 0.97003 * 119.99159 * 180.02562 * 23 22 20 46 46 H 1.08003 * 120.10719 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 -0.0005 5 6 1.8940 3.6168 -0.0011 6 6 3.2779 3.7124 -0.0006 7 7 3.8916 4.9580 -0.0006 8 6 3.0773 6.1758 -0.0006 9 1 2.1764 6.0130 0.5911 10 6 2.6881 6.5314 -1.4382 11 8 3.8686 6.8078 -2.1948 12 6 4.6307 7.9135 -1.7063 13 6 5.1014 7.6163 -0.2798 14 6 3.8828 7.3301 0.6011 15 8 3.0575 8.5035 0.6728 16 6 2.5327 8.5039 2.0225 17 6 3.7324 7.9444 2.8272 18 8 4.3122 6.9823 1.9226 19 6 4.0610 2.5334 -0.0054 20 6 5.4688 2.6149 -0.0103 21 1 5.9606 3.4884 0.3916 22 6 6.2285 1.5642 -0.5359 23 7 5.6573 0.6532 -1.2824 24 14 8.0578 1.4614 -0.1722 25 1 8.2658 1.3558 1.2943 26 1 8.6290 0.2648 -0.8411 27 1 8.7332 2.6820 -0.6815 28 6 3.4229 1.2793 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2052 2.3130 -0.0014 33 1 1.2924 4.5138 -0.0011 34 1 4.8595 5.0218 -0.0006 35 1 2.0448 7.4113 -1.4338 36 1 2.1555 5.6937 -1.8885 37 1 5.4966 8.0706 -2.3495 38 1 4.0108 8.8101 -1.7053 39 1 5.7584 6.7466 -0.2867 40 1 5.6405 8.4783 0.1130 41 1 1.6671 7.8465 2.1048 42 1 2.2846 9.5154 2.3443 43 1 3.3902 7.4571 3.7402 44 1 4.4466 8.7346 3.0585 45 1 6.1841 -0.0755 -1.6464 46 1 4.0100 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168352361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:50 Heat of formation + Delta-G solvation = -131.601671 kcal Electronic energy + Delta-G solvation = -30799.602440 eV Core-core repulsion = 26655.149278 eV Total energy + Delta-G solvation = -4144.453162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05868 -38.70134 -38.18789 -36.70046 -35.08046 -34.17029 -33.15768 -32.04775 -30.15885 -29.43933 -28.73874 -27.42880 -25.66107 -24.97753 -24.09274 -23.57762 -23.08620 -21.19547 -20.24709 -19.17612 -17.67964 -17.30236 -17.05692 -16.37656 -15.99479 -15.85645 -15.81337 -15.17815 -14.94978 -14.72632 -14.64557 -14.54745 -14.19156 -13.83128 -13.39207 -13.13239 -13.03986 -12.79534 -12.66394 -12.16925 -12.04977 -11.88984 -11.82930 -11.63646 -11.51066 -11.32166 -11.19417 -11.04395 -10.95939 -10.58434 -10.48240 -10.31456 -10.16821 -9.93909 -9.53185 -9.44770 -9.28787 -9.03272 -8.26141 -7.33267 -6.63703 -5.91613 -4.11312 2.86925 3.14224 3.16467 3.21393 3.26732 3.32029 3.74242 4.03061 4.12271 4.38092 4.48962 4.58433 4.66187 4.75949 4.77089 4.81038 5.01938 5.05844 5.23218 5.37956 5.42154 5.52369 5.59120 5.67658 5.70998 5.78278 5.79393 5.85005 5.86335 5.95024 6.00820 6.14486 6.18345 6.22845 6.42932 6.92408 7.01427 7.06636 7.25049 7.41514 7.52674 7.61407 7.69354 7.98256 8.12743 8.33292 8.66489 8.86708 8.93312 9.04254 9.19277 10.34675 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.004895 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.096903 B = 5718.733190 C = 7309.141626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C 0.092 3.908 4 C -0.277 4.277 5 C -0.155 4.155 6 C 0.102 3.898 7 N -0.722 5.722 8 C 0.118 3.882 9 H 0.081 0.919 10 C 0.050 3.950 11 O -0.367 6.367 12 C 0.066 3.934 13 C -0.157 4.157 14 C 0.253 3.747 15 O -0.369 6.369 16 C 0.014 3.986 17 C 0.019 3.981 18 O -0.359 6.359 19 C 0.100 3.900 20 C -0.457 4.457 21 H 0.073 0.927 22 C 0.076 3.924 23 N -0.792 5.792 24 Si 0.905 3.095 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.267 1.267 28 C -0.171 4.171 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.397 0.603 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.279 0.721 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.541 13.555 4.297 14.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.246 6.246 3 C 0.048 3.952 4 C -0.297 4.297 5 C -0.178 4.178 6 C 0.004 3.996 7 N -0.358 5.358 8 C 0.009 3.991 9 H 0.099 0.901 10 C -0.028 4.028 11 O -0.285 6.285 12 C -0.011 4.011 13 C -0.195 4.195 14 C 0.176 3.824 15 O -0.289 6.289 16 C -0.062 4.062 17 C -0.058 4.058 18 O -0.279 6.279 19 C 0.095 3.905 20 C -0.487 4.487 21 H 0.091 0.909 22 C -0.141 4.141 23 N -0.418 5.418 24 Si 0.729 3.271 25 H -0.190 1.190 26 H -0.205 1.205 27 H -0.192 1.192 28 C -0.192 4.192 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.234 0.766 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.117 0.883 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.375 13.127 3.868 14.368 hybrid contribution 0.616 0.334 0.534 0.882 sum -3.759 13.462 4.403 14.654 Atomic orbital electron populations 1.22686 0.81332 1.01478 1.00199 1.85996 1.18976 1.29238 1.90428 1.18802 0.92406 0.82307 1.01690 1.20136 0.96811 0.92148 1.20655 1.19718 0.92170 0.95528 1.10396 1.17801 0.90958 0.84886 1.05973 1.43553 1.07057 1.00172 1.85014 1.21649 0.95334 0.86026 0.96061 0.90140 1.23164 0.87122 1.00474 0.92081 1.88011 1.37369 1.50149 1.52962 1.22490 0.95942 0.89568 0.93133 1.22551 0.96892 1.04004 0.96071 1.23471 0.89383 0.84471 0.85106 1.89219 1.64686 1.44363 1.30620 1.24412 0.97159 1.03244 0.81418 1.24182 0.94284 0.92699 0.94599 1.89032 1.72267 1.51164 1.15483 1.16920 0.92736 0.88436 0.92395 1.19088 0.90840 1.03020 1.35775 0.90872 1.25791 1.00629 0.94806 0.92867 1.69853 1.38089 1.10871 1.22953 0.86434 0.82561 0.78397 0.79658 1.19036 1.20462 1.19227 1.20342 0.89234 0.98654 1.10985 0.90250 0.94064 0.93956 0.89078 0.89492 0.76571 0.93037 0.87948 0.88647 0.92839 0.88648 0.90086 0.90463 0.87409 0.88294 0.90847 0.91018 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.81 101.05 0.99 1.66 16 2 O -0.33 -7.66 10.49 -19.62 -0.21 -7.87 16 3 C 0.09 2.32 6.67 -39.29 -0.26 2.05 16 4 C -0.28 -6.38 9.03 -39.19 -0.35 -6.73 16 5 C -0.15 -3.49 8.82 -39.46 -0.35 -3.84 16 6 C 0.10 2.46 6.67 -83.25 -0.55 1.90 16 7 N -0.72 -15.00 4.82 -51.62 -0.25 -15.24 16 8 C 0.12 2.02 1.90 -67.83 -0.13 1.89 16 9 H 0.08 1.39 6.49 -51.93 -0.34 1.05 16 10 C 0.05 0.83 6.24 37.22 0.23 1.06 16 11 O -0.37 -6.34 10.67 -35.23 -0.38 -6.72 16 12 C 0.07 0.90 6.70 37.22 0.25 1.15 16 13 C -0.16 -2.21 5.35 -26.63 -0.14 -2.35 16 14 C 0.25 3.77 0.75 -26.66 -0.02 3.75 16 15 O -0.37 -4.81 9.99 -59.04 -0.59 -5.40 16 16 C 0.01 0.14 7.92 38.17 0.30 0.44 16 17 C 0.02 0.20 8.08 38.17 0.31 0.51 16 18 O -0.36 -5.57 10.69 -59.04 -0.63 -6.21 16 19 C 0.10 2.67 5.58 -106.65 -0.60 2.08 16 20 C -0.46 -12.05 8.51 -37.90 -0.32 -12.37 16 21 H 0.07 1.85 6.67 -52.49 -0.35 1.50 16 22 C 0.08 1.95 5.19 -17.33 -0.09 1.86 16 23 N -0.79 -21.17 10.88 55.55 0.60 -20.56 16 24 Si 0.90 19.20 29.59 -169.99 -5.03 14.17 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.17 -4.67 8.60 -38.80 -0.33 -5.01 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 31 H 0.04 0.69 7.65 -51.93 -0.40 0.29 16 32 H 0.09 1.86 6.26 -52.49 -0.33 1.53 16 33 H 0.09 1.73 6.14 -52.48 -0.32 1.41 16 34 H 0.40 8.54 5.35 -40.82 -0.22 8.33 16 35 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 36 H 0.10 1.83 7.75 -51.93 -0.40 1.42 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 39 H 0.10 1.49 6.80 -51.93 -0.35 1.13 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 46 H 0.13 3.68 6.14 -52.48 -0.32 3.36 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -30.97 362.07 -8.42 -39.40 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -6.33 Total: 14.92 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.07 Total: -11.94 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.36 Total: -35.81 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.80 Total: -26.19 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.97 -8.42 -39.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168352361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.205 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds