Wall clock time and date at job start Tue Mar 31 2020 18:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35962 * 117.00128 * 2 1 4 4 C 1.39420 * 119.82020 * 359.97438 * 3 2 1 5 5 C 1.38094 * 120.57030 * 180.02562 * 4 3 2 6 6 C 1.38714 * 120.20320 * 359.97438 * 5 4 3 7 7 N 1.38854 * 120.18344 * 180.02562 * 6 5 4 8 8 C 1.46501 * 119.99946 * 0.02562 * 7 6 5 9 9 H 1.09000 * 109.58427 * 35.17553 * 8 7 6 10 10 C 1.53124 * 109.52926 * 275.00346 * 8 7 6 11 11 O 1.42911 * 109.39147 * 297.41827 * 10 8 7 12 12 C 1.42902 * 114.15336 * 298.65173 * 11 10 8 13 13 C 1.53125 * 109.40320 * 61.34257 * 12 11 10 14 14 C 1.53067 * 109.12761 * 302.69706 * 13 12 11 15 15 O 1.43636 * 109.47663 * 296.53501 * 14 13 12 16 16 C 1.44813 * 104.77418 * 215.75183 * 15 14 13 17 17 C 1.54923 * 101.73291 * 35.99818 * 16 15 14 18 18 O 1.43234 * 109.73431 * 177.02460 * 14 13 12 19 19 C 1.41545 * 119.63907 * 0.27688 * 6 5 4 20 20 C 1.41020 * 120.27714 * 179.74732 * 19 6 5 21 21 H 1.07999 * 120.00507 * 25.46685 * 20 19 6 22 22 C 1.39909 * 119.99744 * 205.46823 * 20 19 6 23 23 N 1.30895 * 119.99909 * 15.18102 * 22 20 19 24 24 Si 1.86796 * 119.99757 * 195.18261 * 22 20 19 25 25 H 1.48498 * 109.47184 * 60.00198 * 24 22 20 26 26 H 1.48506 * 109.47131 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47385 * 299.99835 * 24 22 20 28 28 C 1.37838 * 119.82465 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47480 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46954 * 300.00132 * 1 2 3 31 31 H 1.09003 * 109.47302 * 60.00186 * 1 2 3 32 32 H 1.08000 * 119.71282 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.89608 * 180.02562 * 5 4 3 34 34 H 0.96997 * 120.00647 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.48905 * 177.44311 * 10 8 7 36 36 H 1.09004 * 109.48682 * 57.39162 * 10 8 7 37 37 H 1.09005 * 109.47730 * 181.31780 * 12 11 10 38 38 H 1.09000 * 109.48140 * 301.35620 * 12 11 10 39 39 H 1.08998 * 109.52835 * 62.59278 * 13 12 11 40 40 H 1.08994 * 109.52655 * 182.79965 * 13 12 11 41 41 H 1.09001 * 110.97535 * 277.89034 * 16 15 14 42 42 H 1.09004 * 110.97275 * 154.10903 * 16 15 14 43 43 H 1.08995 * 110.69338 * 206.10822 * 17 16 15 44 44 H 1.08998 * 110.83928 * 82.98247 * 17 16 15 45 45 H 0.97003 * 119.99159 * 180.02562 * 23 22 20 46 46 H 1.08003 * 120.10719 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 -0.0005 5 6 1.8940 3.6168 -0.0011 6 6 3.2779 3.7124 -0.0006 7 7 3.8916 4.9580 -0.0006 8 6 3.0773 6.1758 -0.0006 9 1 2.1764 6.0130 0.5911 10 6 2.6881 6.5314 -1.4382 11 8 3.8686 6.8078 -2.1948 12 6 4.6307 7.9135 -1.7063 13 6 5.1014 7.6163 -0.2798 14 6 3.8828 7.3301 0.6011 15 8 3.0575 8.5035 0.6728 16 6 2.5327 8.5039 2.0225 17 6 3.7324 7.9444 2.8272 18 8 4.3122 6.9823 1.9226 19 6 4.0610 2.5334 -0.0054 20 6 5.4688 2.6149 -0.0103 21 1 5.9606 3.4884 0.3916 22 6 6.2285 1.5642 -0.5359 23 7 5.6573 0.6532 -1.2824 24 14 8.0578 1.4614 -0.1722 25 1 8.2658 1.3558 1.2943 26 1 8.6290 0.2648 -0.8411 27 1 8.7332 2.6820 -0.6815 28 6 3.4229 1.2793 -0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2052 2.3130 -0.0014 33 1 1.2924 4.5138 -0.0011 34 1 4.8595 5.0218 -0.0006 35 1 2.0448 7.4113 -1.4338 36 1 2.1555 5.6937 -1.8885 37 1 5.4966 8.0706 -2.3495 38 1 4.0108 8.8101 -1.7053 39 1 5.7584 6.7466 -0.2867 40 1 5.6405 8.4783 0.1130 41 1 1.6671 7.8465 2.1048 42 1 2.2846 9.5154 2.3443 43 1 3.3902 7.4571 3.7402 44 1 4.4466 8.7346 3.0585 45 1 6.1841 -0.0755 -1.6464 46 1 4.0100 0.3728 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168352361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:49 Heat of formation + Delta-G solvation = -152.926716 kcal Electronic energy + Delta-G solvation = -30800.527163 eV Core-core repulsion = 26655.149278 eV Total energy + Delta-G solvation = -4145.377885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14628 -40.40774 -39.47054 -38.38165 -36.13776 -35.82006 -34.90549 -33.20653 -31.80442 -31.04019 -29.86937 -28.96868 -27.23928 -26.84739 -25.22561 -24.79494 -24.01311 -22.94935 -21.94341 -20.55405 -19.47512 -18.59669 -18.13482 -17.83634 -17.47742 -17.30921 -16.92259 -16.61190 -16.43630 -16.24040 -16.16253 -16.00946 -15.40847 -15.04424 -14.80530 -14.46773 -14.36085 -14.19376 -13.88504 -13.70449 -13.52736 -13.42244 -13.24389 -12.99648 -12.92845 -12.74675 -12.58710 -12.57689 -12.52626 -12.20198 -11.98844 -11.80688 -11.55000 -11.18607 -11.15161 -10.95822 -10.78123 -10.57312 -9.90481 -9.28868 -8.55162 -7.73114 -6.07822 1.01662 1.34938 1.38641 1.49659 1.55189 2.24446 2.27103 2.63918 2.80494 2.92873 2.96337 3.14129 3.46288 3.65754 3.69381 3.79154 3.92745 4.03562 4.15672 4.22753 4.27900 4.38462 4.44489 4.48369 4.51559 4.56013 4.58909 4.60786 4.66254 4.73488 4.75766 4.77323 4.93470 4.95235 5.04068 5.09813 5.16522 5.32304 5.61070 5.74587 5.83540 6.02083 6.06382 6.22617 6.25147 6.41349 6.82372 6.99138 7.06212 7.22680 7.34392 8.45564 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009669 B = 0.004895 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2895.096903 B = 5718.733190 C = 7309.141626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.078 3.922 4 C -0.268 4.268 5 C -0.158 4.158 6 C 0.101 3.899 7 N -0.720 5.720 8 C 0.114 3.886 9 H 0.080 0.920 10 C 0.055 3.945 11 O -0.394 6.394 12 C 0.064 3.936 13 C -0.156 4.156 14 C 0.260 3.740 15 O -0.371 6.371 16 C 0.012 3.988 17 C 0.010 3.990 18 O -0.391 6.391 19 C 0.066 3.934 20 C -0.482 4.482 21 H 0.074 0.926 22 C 0.032 3.968 23 N -0.830 5.830 24 Si 0.976 3.024 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.258 1.258 28 C -0.202 4.202 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.391 0.609 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.282 0.718 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.428 16.024 5.008 17.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.034 3.966 4 C -0.289 4.289 5 C -0.182 4.182 6 C 0.001 3.999 7 N -0.355 5.355 8 C 0.006 3.994 9 H 0.098 0.902 10 C -0.023 4.023 11 O -0.313 6.313 12 C -0.012 4.012 13 C -0.194 4.194 14 C 0.182 3.818 15 O -0.291 6.291 16 C -0.064 4.064 17 C -0.065 4.065 18 O -0.312 6.312 19 C 0.061 3.939 20 C -0.513 4.513 21 H 0.092 0.908 22 C -0.181 4.181 23 N -0.457 5.457 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.183 1.183 28 C -0.224 4.224 29 H 0.130 0.870 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.227 0.773 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.162 0.838 43 H 0.128 0.872 44 H 0.110 0.890 45 H 0.093 0.907 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.293 15.636 4.589 17.133 hybrid contribution 0.711 -0.366 0.370 0.881 sum -4.582 15.270 4.958 16.696 Atomic orbital electron populations 1.23060 0.78137 1.04142 1.01170 1.85949 1.22316 1.28552 1.90352 1.18880 0.92070 0.83793 1.01891 1.20488 0.98301 0.91452 1.18624 1.20042 0.91900 0.96631 1.09645 1.17955 0.91602 0.85465 1.04892 1.43618 1.07071 1.00454 1.84310 1.21854 0.95203 0.85483 0.96818 0.90224 1.23066 0.87321 1.00817 0.91144 1.87970 1.37923 1.51757 1.53666 1.22699 0.96443 0.88978 0.93131 1.22529 0.96558 1.03913 0.96409 1.23202 0.89404 0.84081 0.85075 1.89206 1.64533 1.42998 1.32397 1.24682 0.96547 1.05436 0.79702 1.24493 0.95057 0.92609 0.94376 1.89009 1.72895 1.52969 1.16337 1.17261 0.93560 0.89431 0.93600 1.19304 0.91316 1.03824 1.36828 0.90774 1.26644 1.05208 0.94090 0.92170 1.69955 1.39905 1.11664 1.24140 0.85355 0.76782 0.78779 0.79383 1.18794 1.19679 1.18254 1.20281 0.90523 0.98060 1.13493 0.86966 0.92710 0.93117 0.85960 0.86569 0.77340 0.90503 0.89922 0.86996 0.91100 0.90893 0.87882 0.90303 0.83804 0.87162 0.89003 0.90746 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 16 2 O -0.36 -16.62 10.49 -93.12 -0.98 -17.60 16 3 C 0.08 4.03 6.67 22.46 0.15 4.18 16 4 C -0.27 -12.17 9.03 22.52 0.20 -11.97 16 5 C -0.16 -7.08 8.82 22.35 0.20 -6.88 16 6 C 0.10 4.95 6.67 38.96 0.26 5.21 16 7 N -0.72 -30.35 4.82 -317.22 -1.53 -31.88 16 8 C 0.11 3.80 1.90 45.06 0.09 3.88 16 9 H 0.08 2.63 6.49 -2.39 -0.02 2.61 16 10 C 0.06 1.75 6.24 72.02 0.45 2.20 16 11 O -0.39 -13.33 10.67 -148.98 -1.59 -14.92 16 12 C 0.06 1.63 6.70 72.02 0.48 2.12 16 13 C -0.16 -4.18 5.35 30.66 0.16 -4.01 16 14 C 0.26 7.32 0.75 30.64 0.02 7.35 16 15 O -0.37 -8.55 9.99 -126.22 -1.26 -9.81 16 16 C 0.01 0.20 7.92 72.64 0.58 0.77 16 17 C 0.01 0.20 8.08 72.64 0.59 0.78 16 18 O -0.39 -11.65 10.69 -126.22 -1.35 -13.00 16 19 C 0.07 3.70 5.58 -21.18 -0.12 3.58 16 20 C -0.48 -26.65 8.51 23.36 0.20 -26.45 16 21 H 0.07 3.92 6.67 -2.91 -0.02 3.90 16 22 C 0.03 1.72 5.19 85.24 0.44 2.17 16 23 N -0.83 -46.66 10.88 21.82 0.24 -46.43 16 24 Si 0.98 40.58 29.59 68.60 2.03 42.61 16 25 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 28 C -0.20 -11.64 8.60 22.78 0.20 -11.45 16 29 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.05 1.62 7.65 -2.38 -0.02 1.60 16 31 H 0.05 1.55 7.65 -2.39 -0.02 1.53 16 32 H 0.12 4.68 6.26 -2.91 -0.02 4.66 16 33 H 0.12 4.43 6.14 -2.91 -0.02 4.41 16 34 H 0.39 17.35 5.35 -92.71 -0.50 16.85 16 35 H 0.08 2.03 7.83 -2.38 -0.02 2.02 16 36 H 0.08 2.92 7.75 -2.38 -0.02 2.90 16 37 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 38 H 0.07 1.57 7.83 -2.39 -0.02 1.55 16 39 H 0.07 2.28 6.80 -2.39 -0.02 2.26 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.28 14.59 8.30 -92.71 -0.77 13.82 16 46 H 0.10 6.14 6.14 -2.91 -0.02 6.13 16 Total: -1.00 -70.87 362.07 1.09 -69.78 By element: Atomic # 1 Polarization: 47.16 SS G_CDS: 0.52 Total: 47.68 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 5.01 Total: -26.45 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.29 Total: -78.30 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -5.18 Total: -55.33 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -70.87 1.09 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168352361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.147 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds