Wall clock time and date at job start Tue Mar 31 2020 18:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00444 * 2 1 4 4 C 1.50699 * 109.47047 * 66.03700 * 3 2 1 5 5 C 1.38669 * 120.42345 * 269.72296 * 4 3 2 6 6 C 1.38629 * 118.42149 * 179.78058 * 5 4 3 7 7 C 1.38221 * 119.16148 * 0.48263 * 6 5 4 8 8 N 1.31860 * 120.76319 * 359.75955 * 7 6 5 9 9 C 1.31889 * 121.72444 * 0.02562 * 8 7 6 10 10 C 1.46897 * 111.00151 * 236.04045 * 2 1 3 11 11 H 1.08996 * 110.88780 * 64.17107 * 10 2 1 12 12 C 1.55163 * 111.03638 * 188.07452 * 10 2 1 13 13 C 1.54332 * 102.93945 * 153.59258 * 12 10 2 14 14 N 1.47017 * 107.26979 * 337.80663 * 13 12 10 15 15 C 1.34784 * 125.64825 * 178.90812 * 14 13 12 16 16 O 1.21275 * 120.00081 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99755 * 0.04022 * 15 14 13 18 18 S 1.80996 * 109.47182 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00210 * 180.02562 * 18 17 15 20 20 H 1.08008 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00306 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00177 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47142 * 59.99339 * 23 21 19 25 25 H 1.48501 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 299.99851 * 23 21 19 27 27 C 1.47420 * 108.70779 * 358.93927 * 14 13 12 28 28 H 1.08999 * 109.47009 * 177.73708 * 1 2 3 29 29 H 1.08996 * 109.46902 * 297.74223 * 1 2 3 30 30 H 1.09001 * 109.46393 * 57.73829 * 1 2 3 31 31 H 1.08993 * 109.47567 * 186.04510 * 3 2 1 32 32 H 1.09004 * 109.46707 * 306.04651 * 3 2 1 33 33 H 1.08003 * 120.78678 * 0.03200 * 5 4 3 34 34 H 1.08009 * 120.41977 * 180.21947 * 6 5 4 35 35 H 1.08002 * 119.62427 * 179.74511 * 7 6 5 36 36 H 1.08001 * 119.61229 * 179.97438 * 9 8 7 37 37 H 1.08998 * 110.72269 * 271.95235 * 12 10 2 38 38 H 1.09000 * 110.72055 * 35.23297 * 12 10 2 39 39 H 1.09003 * 109.87654 * 218.39110 * 13 12 10 40 40 H 1.09000 * 110.00955 * 97.29777 * 13 12 10 41 41 H 1.09006 * 109.47073 * 300.00471 * 17 15 14 42 42 H 1.09001 * 109.47450 * 60.00053 * 17 15 14 43 43 H 0.96992 * 120.00286 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.37348 * 265.29200 * 27 14 13 45 45 H 1.09001 * 110.36807 * 142.96289 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 6 0.4524 2.7585 1.4159 6 6 0.1617 3.3599 2.6307 7 6 1.0605 3.2398 3.6739 8 7 2.1801 2.5595 3.5245 9 6 2.4873 1.9710 2.3848 10 6 1.9955 -0.7661 -1.1375 11 1 1.7206 -0.2973 -2.0823 12 6 3.5337 -0.9382 -1.0289 13 6 3.7922 -2.2399 -1.8166 14 7 2.5302 -2.9937 -1.8402 15 6 2.3348 -4.1796 -2.4504 16 8 1.2465 -4.7128 -2.4051 17 6 3.4689 -4.8429 -3.1886 18 16 2.8957 -6.4081 -3.8941 19 6 4.3782 -6.9527 -4.6752 20 1 5.2721 -6.3492 -4.6178 21 6 4.3972 -8.1570 -5.3652 22 7 3.3078 -8.8923 -5.4356 23 14 5.9691 -8.7347 -6.1926 24 1 7.0376 -8.8886 -5.1728 25 1 5.7277 -10.0407 -6.8569 26 1 6.3919 -7.7343 -7.2053 27 6 1.5136 -2.2375 -1.0867 28 1 -0.3633 -1.0269 -0.0406 29 1 -0.3633 0.4784 0.9095 30 1 -0.3632 0.5486 -0.8691 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 -0.2294 2.8387 0.5821 34 1 -0.7536 3.9187 2.7591 35 1 0.8435 3.7088 4.6222 36 1 3.4139 1.4227 2.3001 37 1 4.0496 -0.0977 -1.4931 38 1 3.8366 -1.0507 0.0121 39 1 4.5651 -2.8264 -1.3198 40 1 4.1026 -2.0045 -2.8346 41 1 3.8134 -4.1884 -3.9892 42 1 4.2896 -5.0345 -2.4974 43 1 3.3211 -9.7340 -5.9174 44 1 1.4684 -2.5864 -0.0551 45 1 0.5382 -2.3338 -1.5638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188957913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:28 Heat of formation + Delta-G solvation = 14.933042 kcal Electronic energy + Delta-G solvation = -25433.979394 eV Core-core repulsion = 21770.926076 eV Total energy + Delta-G solvation = -3663.053318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73243 -39.93714 -38.17199 -36.13119 -33.08311 -32.42934 -32.14474 -31.05202 -29.76909 -28.00358 -27.61638 -25.51317 -24.77915 -23.91381 -22.87035 -22.09692 -20.49057 -19.33081 -17.74917 -17.48691 -17.08851 -16.65967 -16.61061 -15.93474 -15.34119 -15.25889 -14.81988 -14.77119 -14.43718 -14.20101 -14.00915 -13.76325 -13.53237 -13.48036 -13.37325 -12.99603 -12.62734 -12.55477 -12.49464 -12.36181 -11.82787 -11.77928 -11.42466 -11.21161 -11.16241 -11.03748 -11.03718 -10.77080 -10.22198 -9.84821 -9.82487 -9.45388 -9.41684 -9.05828 -8.80431 -8.51260 -8.23916 -6.50387 -6.21336 -3.92212 0.67850 0.86113 2.82172 3.05112 3.22161 3.23500 3.28357 3.32649 3.57291 3.75965 4.02916 4.12223 4.20820 4.32484 4.35865 4.43258 4.53099 4.58550 4.75563 4.84584 4.91103 5.02941 5.06432 5.10983 5.13662 5.14610 5.20208 5.33421 5.37641 5.46462 5.52097 5.59445 5.62119 5.67541 5.70927 5.76039 5.80663 5.83110 5.94376 6.13772 6.28072 6.36500 6.53059 6.64162 7.59181 7.59209 7.65445 8.35110 8.54480 9.23657 10.86064 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.036136 B = 0.001836 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.654191 B =15247.154921 C =15681.349714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.525 5.525 3 C 0.096 3.904 4 C -0.127 4.127 5 C -0.070 4.070 6 C -0.174 4.174 7 C 0.096 3.904 8 N -0.486 5.486 9 C 0.120 3.880 10 C 0.068 3.932 11 H 0.061 0.939 12 C -0.123 4.123 13 C 0.103 3.897 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.516 6.516 17 C -0.146 4.146 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.119 3.881 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 27.651 13.870 31.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.249 5.249 3 C -0.032 4.032 4 C -0.130 4.130 5 C -0.096 4.096 6 C -0.194 4.194 7 C -0.061 4.061 8 N -0.194 5.194 9 C -0.037 4.037 10 C -0.041 4.041 11 H 0.079 0.921 12 C -0.161 4.161 13 C -0.020 4.020 14 N -0.364 5.364 15 C 0.338 3.662 16 O -0.390 6.390 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.005 4.005 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.173 0.827 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.894 26.287 14.948 30.489 hybrid contribution 1.335 0.782 -2.025 2.549 sum -2.558 27.069 12.923 30.104 Atomic orbital electron populations 1.22522 0.86849 1.02888 1.00854 1.61987 1.08329 1.12336 1.42255 1.20988 1.01220 0.87978 0.92969 1.20727 0.95910 0.98958 0.97386 1.21533 0.95738 0.94626 0.97750 1.22134 1.01338 1.01665 0.94267 1.22795 0.89517 0.94978 0.98804 1.67741 1.18721 1.07964 1.25002 1.22685 0.98985 0.94709 0.87362 1.22820 0.95443 0.93849 0.92018 0.92130 1.22725 0.94564 0.96935 1.01911 1.21983 0.87267 0.92127 1.00657 1.48423 1.12109 1.21039 1.54847 1.20031 0.89744 0.78672 0.77758 1.90708 1.26263 1.62324 1.59666 1.23503 0.99416 1.04576 1.02186 1.85399 1.17638 1.14083 1.66280 1.22820 0.97415 1.09079 1.39087 0.90969 1.24990 0.97325 0.95482 0.95755 1.70004 1.27258 1.12963 1.40043 0.86224 0.81950 0.77971 0.79351 1.19922 1.20800 1.19950 1.22066 0.92579 0.88686 0.97138 0.90594 0.91125 0.95279 0.89087 0.93492 0.85151 0.84830 0.82868 0.82674 0.90153 0.89254 0.90955 0.91229 0.89309 0.89229 0.92121 0.90624 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 8.96 60.07 0.54 0.66 16 2 N -0.52 -4.03 4.65 -233.75 -1.09 -5.11 16 3 C 0.10 0.59 5.03 -4.98 -0.03 0.56 16 4 C -0.13 -0.87 4.88 -104.48 -0.51 -1.38 16 5 C -0.07 -0.42 8.23 -39.28 -0.32 -0.75 16 6 C -0.17 -1.00 10.11 -39.44 -0.40 -1.40 16 7 C 0.10 0.68 11.18 -17.55 -0.20 0.48 16 8 N -0.49 -4.46 10.36 -13.25 -0.14 -4.60 16 9 C 0.12 0.96 10.86 -17.55 -0.19 0.77 16 10 C 0.07 0.58 2.71 -65.56 -0.18 0.41 16 11 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 12 C -0.12 -0.93 5.44 -24.89 -0.14 -1.06 16 13 C 0.10 1.08 6.49 -3.06 -0.02 1.06 16 14 N -0.63 -9.06 3.33 -170.52 -0.57 -9.62 16 15 C 0.55 10.71 7.87 -10.98 -0.09 10.63 16 16 O -0.52 -12.10 16.12 5.56 0.09 -12.01 16 17 C -0.15 -3.02 5.35 36.01 0.19 -2.83 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 23 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.12 1.44 5.23 -2.53 -0.01 1.42 16 28 H 0.08 0.62 6.77 -51.93 -0.35 0.27 16 29 H 0.07 0.50 6.33 -51.93 -0.33 0.17 16 30 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 31 H 0.09 0.47 6.80 -51.93 -0.35 0.12 16 32 H 0.05 0.27 8.06 -51.93 -0.42 -0.15 16 33 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.13 0.45 8.06 -52.48 -0.42 0.03 16 35 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 36 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.08 0.45 7.89 -51.93 -0.41 0.04 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.08 1.00 7.76 -51.93 -0.40 0.59 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -35.58 383.53 -10.45 -46.03 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -6.88 Total: -3.06 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -1.15 Total: -4.42 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -1.06 Total: -44.81 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.58 -10.45 -46.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188957913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.962 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds