Wall clock time and date at job start Tue Mar 31 2020 18:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46902 * 111.00444 * 2 1 4 4 C 1.50699 * 109.47047 * 66.03700 * 3 2 1 5 5 C 1.38669 * 120.42345 * 269.72296 * 4 3 2 6 6 C 1.38629 * 118.42149 * 179.78058 * 5 4 3 7 7 C 1.38221 * 119.16148 * 0.48263 * 6 5 4 8 8 N 1.31860 * 120.76319 * 359.75955 * 7 6 5 9 9 C 1.31889 * 121.72444 * 0.02562 * 8 7 6 10 10 C 1.46897 * 111.00151 * 236.04045 * 2 1 3 11 11 H 1.08996 * 110.88780 * 64.17107 * 10 2 1 12 12 C 1.55163 * 111.03638 * 188.07452 * 10 2 1 13 13 C 1.54332 * 102.93945 * 153.59258 * 12 10 2 14 14 N 1.47017 * 107.26979 * 337.80663 * 13 12 10 15 15 C 1.34784 * 125.64825 * 178.90812 * 14 13 12 16 16 O 1.21275 * 120.00081 * 180.02562 * 15 14 13 17 17 C 1.50699 * 119.99755 * 0.04022 * 15 14 13 18 18 S 1.80996 * 109.47182 * 180.02562 * 17 15 14 19 19 C 1.76196 * 100.00210 * 180.02562 * 18 17 15 20 20 H 1.08008 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38803 * 120.00306 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99850 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00177 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47142 * 59.99339 * 23 21 19 25 25 H 1.48501 * 109.47331 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46897 * 299.99851 * 23 21 19 27 27 C 1.47420 * 108.70779 * 358.93927 * 14 13 12 28 28 H 1.08999 * 109.47009 * 177.73708 * 1 2 3 29 29 H 1.08996 * 109.46902 * 297.74223 * 1 2 3 30 30 H 1.09001 * 109.46393 * 57.73829 * 1 2 3 31 31 H 1.08993 * 109.47567 * 186.04510 * 3 2 1 32 32 H 1.09004 * 109.46707 * 306.04651 * 3 2 1 33 33 H 1.08003 * 120.78678 * 0.03200 * 5 4 3 34 34 H 1.08009 * 120.41977 * 180.21947 * 6 5 4 35 35 H 1.08002 * 119.62427 * 179.74511 * 7 6 5 36 36 H 1.08001 * 119.61229 * 179.97438 * 9 8 7 37 37 H 1.08998 * 110.72269 * 271.95235 * 12 10 2 38 38 H 1.09000 * 110.72055 * 35.23297 * 12 10 2 39 39 H 1.09003 * 109.87654 * 218.39110 * 13 12 10 40 40 H 1.09000 * 110.00955 * 97.29777 * 13 12 10 41 41 H 1.09006 * 109.47073 * 300.00471 * 17 15 14 42 42 H 1.09001 * 109.47450 * 60.00053 * 17 15 14 43 43 H 0.96992 * 120.00286 * 180.02562 * 22 21 19 44 44 H 1.08996 * 110.37348 * 265.29200 * 27 14 13 45 45 H 1.09001 * 110.36807 * 142.96289 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 6 0.4524 2.7585 1.4159 6 6 0.1617 3.3599 2.6307 7 6 1.0605 3.2398 3.6739 8 7 2.1801 2.5595 3.5245 9 6 2.4873 1.9710 2.3848 10 6 1.9955 -0.7661 -1.1375 11 1 1.7206 -0.2973 -2.0823 12 6 3.5337 -0.9382 -1.0289 13 6 3.7922 -2.2399 -1.8166 14 7 2.5302 -2.9937 -1.8402 15 6 2.3348 -4.1796 -2.4504 16 8 1.2465 -4.7128 -2.4051 17 6 3.4689 -4.8429 -3.1886 18 16 2.8957 -6.4081 -3.8941 19 6 4.3782 -6.9527 -4.6752 20 1 5.2721 -6.3492 -4.6178 21 6 4.3972 -8.1570 -5.3652 22 7 3.3078 -8.8923 -5.4356 23 14 5.9691 -8.7347 -6.1926 24 1 7.0376 -8.8886 -5.1728 25 1 5.7277 -10.0407 -6.8569 26 1 6.3919 -7.7343 -7.2053 27 6 1.5136 -2.2375 -1.0867 28 1 -0.3633 -1.0269 -0.0406 29 1 -0.3633 0.4784 0.9095 30 1 -0.3632 0.5486 -0.8691 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8310 33 1 -0.2294 2.8387 0.5821 34 1 -0.7536 3.9187 2.7591 35 1 0.8435 3.7088 4.6222 36 1 3.4139 1.4227 2.3001 37 1 4.0496 -0.0977 -1.4931 38 1 3.8366 -1.0507 0.0121 39 1 4.5651 -2.8264 -1.3198 40 1 4.1026 -2.0045 -2.8346 41 1 3.8134 -4.1884 -3.9892 42 1 4.2896 -5.0345 -2.4974 43 1 3.3211 -9.7340 -5.9174 44 1 1.4684 -2.5864 -0.0551 45 1 0.5382 -2.3338 -1.5638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188957913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:27 Heat of formation + Delta-G solvation = -9.486607 kcal Electronic energy + Delta-G solvation = -25435.038309 eV Core-core repulsion = 21770.926076 eV Total energy + Delta-G solvation = -3664.112233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35771 -40.94123 -39.23829 -37.07653 -34.58928 -33.71771 -32.69678 -32.05557 -30.94958 -29.07157 -28.20616 -27.65741 -25.54945 -24.40863 -23.78484 -22.64533 -21.19143 -20.69731 -19.59087 -18.16216 -17.96727 -17.77596 -17.24296 -16.88418 -16.75497 -16.36671 -16.27431 -15.79817 -15.58612 -15.09564 -15.06821 -14.58183 -14.44028 -14.31668 -14.04399 -13.94757 -13.85996 -13.77329 -13.40622 -13.16123 -13.11123 -12.96481 -12.86319 -12.63250 -12.36212 -12.05724 -11.95259 -11.82360 -11.74701 -11.12896 -11.01118 -10.71339 -10.35772 -10.29478 -9.92974 -9.73267 -9.36534 -8.68886 -8.34568 -6.13714 0.19679 0.39051 1.22660 1.44230 1.44503 1.53349 1.54892 2.02500 2.27272 2.73832 2.99449 3.12137 3.21032 3.39727 3.60605 3.64606 3.83933 3.90062 3.93407 4.05740 4.12869 4.13862 4.20224 4.28000 4.33928 4.43116 4.44149 4.46551 4.58609 4.65224 4.67082 4.80029 4.86825 4.88229 4.93484 4.97664 5.01314 5.19250 5.23577 5.30396 5.35239 5.41232 5.82537 5.97007 6.00515 6.19404 6.36014 7.06184 7.08007 7.09602 8.74510 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.036136 B = 0.001836 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.654191 B =15247.154921 C =15681.349714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.531 5.531 3 C 0.100 3.900 4 C -0.130 4.130 5 C -0.075 4.075 6 C -0.173 4.173 7 C 0.081 3.919 8 N -0.519 5.519 9 C 0.103 3.897 10 C 0.081 3.919 11 H 0.066 0.934 12 C -0.110 4.110 13 C 0.091 3.909 14 N -0.617 5.617 15 C 0.546 3.454 16 O -0.569 6.569 17 C -0.119 4.119 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.261 1.261 27 C 0.115 3.885 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.070 0.930 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 30.237 13.765 33.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.027 4.027 4 C -0.133 4.133 5 C -0.101 4.101 6 C -0.192 4.192 7 C -0.076 4.076 8 N -0.228 5.228 9 C -0.054 4.054 10 C -0.028 4.028 11 H 0.084 0.916 12 C -0.148 4.148 13 C -0.031 4.031 14 N -0.352 5.352 15 C 0.334 3.666 16 O -0.447 6.447 17 C -0.270 4.270 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.185 1.185 27 C -0.008 4.008 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.166 0.834 34 H 0.176 0.824 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.943 28.942 14.872 32.597 hybrid contribution 0.675 0.126 -1.872 1.994 sum -1.268 29.068 13.001 31.868 Atomic orbital electron populations 1.22490 0.86909 1.02149 1.01434 1.61955 1.08409 1.13488 1.41702 1.21025 1.02032 0.86799 0.92885 1.20795 0.96045 0.99109 0.97315 1.21826 0.95723 0.94140 0.98430 1.22421 1.01823 1.01224 0.93739 1.23183 0.89355 0.94942 1.00087 1.67714 1.20029 1.09152 1.25932 1.22880 0.99727 0.95174 0.87603 1.22653 0.96129 0.91301 0.92708 0.91576 1.22732 0.93644 0.96269 1.02134 1.22382 0.85389 0.93115 1.02221 1.48360 1.14475 1.19533 1.52846 1.19801 0.88579 0.79988 0.78191 1.90685 1.27870 1.64235 1.61955 1.23292 1.00006 1.00839 1.02826 1.85602 1.19917 1.19440 1.67568 1.23163 0.97456 1.09661 1.39160 0.89802 1.26149 1.01264 0.95461 0.96274 1.70177 1.29974 1.13504 1.41111 0.84991 0.76962 0.77557 0.78401 1.18625 1.20407 1.18537 1.22191 0.91519 0.91035 0.96047 0.92092 0.90828 0.94317 0.87736 0.92423 0.83447 0.82413 0.81241 0.82082 0.86916 0.88680 0.90194 0.89948 0.87342 0.87502 0.91974 0.91199 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.96 127.69 1.14 1.39 16 2 N -0.53 -6.94 4.65 -893.43 -4.16 -11.10 16 3 C 0.10 0.92 5.03 85.56 0.43 1.35 16 4 C -0.13 -1.51 4.88 -19.78 -0.10 -1.60 16 5 C -0.07 -0.73 8.23 22.47 0.18 -0.55 16 6 C -0.17 -1.63 10.11 22.36 0.23 -1.41 16 7 C 0.08 1.04 11.18 84.68 0.95 1.99 16 8 N -0.52 -9.17 10.36 -195.84 -2.03 -11.19 16 9 C 0.10 1.52 10.86 84.67 0.92 2.44 16 10 C 0.08 1.20 2.71 46.31 0.13 1.33 16 11 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 12 C -0.11 -1.25 5.44 31.79 0.17 -1.08 16 13 C 0.09 1.63 6.49 86.73 0.56 2.20 16 14 N -0.62 -17.24 3.33 -811.79 -2.70 -19.94 16 15 C 0.55 21.48 7.87 87.66 0.69 22.17 16 16 O -0.57 -27.83 16.12 -3.01 -0.05 -27.88 16 17 C -0.12 -4.86 5.35 71.24 0.38 -4.47 16 18 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 19 C -0.55 -31.36 9.50 67.96 0.65 -30.71 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.76 5.49 84.86 0.47 1.23 16 22 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 23 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 27 C 0.12 2.72 5.23 86.86 0.45 3.18 16 28 H 0.06 0.99 6.77 -2.39 -0.02 0.97 16 29 H 0.07 0.94 6.33 -2.39 -0.02 0.92 16 30 H 0.04 0.44 8.12 -2.39 -0.02 0.42 16 31 H 0.10 0.69 6.80 -2.39 -0.02 0.67 16 32 H 0.06 0.44 8.06 -2.39 -0.02 0.42 16 33 H 0.15 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.11 0.66 7.89 -2.39 -0.02 0.64 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.59 7.76 -2.39 -0.02 1.57 16 Total: -1.00 -80.77 383.53 0.44 -80.33 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 0.97 Total: 12.59 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 7.25 Total: -2.57 kcal Atomic # 7 Polarization: -89.63 SS G_CDS: -8.60 Total: -98.23 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -80.77 0.44 -80.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188957913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.841 kcal (2) G-P(sol) polarization free energy of solvation -80.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds